Wall clock time and date at job start Tue Mar 31 2020 10:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34781 * 117.00023 * 2 1 4 4 O 1.21547 * 120.00055 * 359.97438 * 3 2 1 5 5 C 1.47080 * 119.99865 * 180.02562 * 3 2 1 6 6 C 1.38197 * 126.46547 * 0.02562 * 5 3 2 7 7 N 1.34127 * 107.53313 * 179.97438 * 6 5 3 8 8 C 1.46496 * 125.66531 * 180.02562 * 7 6 5 9 9 N 1.39920 * 108.67069 * 359.75541 * 7 6 5 10 10 C 1.30911 * 108.88222 * 0.41996 * 9 7 6 11 11 N 1.39783 * 126.07722 * 179.84776 * 10 9 7 12 12 C 1.34771 * 119.99825 * 359.69525 * 11 10 9 13 13 O 1.21584 * 120.00138 * 359.97438 * 12 11 10 14 14 N 1.34783 * 119.99706 * 179.97438 * 12 11 10 15 15 C 1.46499 * 119.99903 * 359.97438 * 14 12 11 16 16 C 1.46499 * 119.99826 * 179.97438 * 14 12 11 17 17 H 1.09002 * 109.47391 * 359.97438 * 16 14 12 18 18 C 1.53000 * 109.46840 * 120.00322 * 16 14 12 19 19 C 1.50699 * 109.47060 * 240.00064 * 16 14 12 20 20 H 1.07999 * 120.00019 * 0.02562 * 19 16 14 21 21 C 1.37877 * 120.00129 * 180.02562 * 19 16 14 22 22 N 1.31519 * 119.99723 * 359.97438 * 21 19 16 23 23 Si 1.86803 * 119.99900 * 179.97438 * 21 19 16 24 24 H 1.48491 * 109.47312 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46948 * 119.99892 * 23 21 19 26 26 H 1.48500 * 109.46809 * 239.99811 * 23 21 19 27 27 H 1.09001 * 109.47005 * 300.00632 * 1 2 3 28 28 H 1.09007 * 109.47051 * 59.99446 * 1 2 3 29 29 H 1.08997 * 109.47341 * 180.02562 * 1 2 3 30 30 H 1.08005 * 126.23381 * 359.94669 * 6 5 3 31 31 H 1.08997 * 109.47161 * 90.00372 * 8 7 6 32 32 H 1.09005 * 109.46847 * 210.00483 * 8 7 6 33 33 H 1.08995 * 109.47205 * 329.99803 * 8 7 6 34 34 H 0.96997 * 119.99635 * 179.69280 * 11 10 9 35 35 H 1.08994 * 109.47057 * 269.99924 * 15 14 12 36 36 H 1.09006 * 109.46711 * 30.00085 * 15 14 12 37 37 H 1.08998 * 109.46853 * 149.99878 * 15 14 12 38 38 H 1.09004 * 109.46724 * 180.02562 * 18 16 14 39 39 H 1.09001 * 109.47194 * 299.99493 * 18 16 14 40 40 H 1.08992 * 109.47399 * 59.99666 * 18 16 14 41 41 H 0.97003 * 119.99231 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4019 2.2203 -0.0005 5 6 3.5326 1.2778 -0.0006 6 6 4.4110 0.2109 -0.0016 7 7 5.6552 0.7119 -0.0024 8 6 6.8921 -0.0732 -0.0042 9 7 5.5756 2.1088 -0.0075 10 6 4.3149 2.4614 -0.0007 11 7 3.8264 3.7711 0.0002 12 6 4.6846 4.8103 -0.0001 13 8 5.8836 4.6086 -0.0006 14 7 4.2135 6.0731 0.0003 15 6 2.7688 6.3160 0.0004 16 6 5.1463 7.2028 0.0006 17 1 6.1701 6.8287 0.0009 18 6 4.9147 8.0556 -1.2484 19 6 4.9184 8.0421 1.2313 20 1 4.1553 7.7618 1.9423 21 6 5.6840 9.1678 1.4495 22 7 6.6135 9.5088 0.5839 23 14 5.4009 10.2085 2.9748 24 1 4.3054 9.6151 3.7826 25 1 6.6458 10.2508 3.7832 26 1 5.0262 11.5874 2.5705 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 4.1442 -0.8356 -0.0014 31 1 7.1979 -0.2670 -1.0322 32 1 7.6762 0.4831 0.5095 33 1 6.7224 -1.0196 0.5091 34 1 2.8699 3.9319 0.0010 35 1 2.4105 6.3765 -1.0272 36 1 2.2630 5.4984 0.5141 37 1 2.5581 7.2538 0.5145 38 1 5.6091 8.8959 -1.2484 39 1 5.0796 7.4486 -2.1386 40 1 3.8910 8.4297 -1.2483 41 1 7.1518 10.3010 0.7373 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414525541.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:29 Heat of formation + Delta-G solvation = -38.475862 kcal Electronic energy + Delta-G solvation = -26022.518240 eV Core-core repulsion = 22132.733916 eV Total energy + Delta-G solvation = -3889.784324 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.68020 -41.10736 -40.85602 -37.55605 -37.27530 -36.09855 -34.82505 -33.35779 -31.82534 -31.05948 -28.64059 -27.86281 -27.38997 -27.27099 -24.44928 -23.67618 -22.28177 -21.50564 -20.35843 -19.25279 -18.67070 -18.39571 -18.10581 -17.51372 -17.41177 -16.91401 -16.77491 -16.37982 -16.18701 -15.81289 -15.04524 -14.67747 -14.55205 -14.31721 -14.19894 -14.15677 -13.59185 -13.55197 -13.48166 -13.16187 -12.93290 -12.86325 -12.73590 -12.64647 -12.22859 -12.11877 -11.97770 -11.91351 -11.70197 -11.60182 -11.20957 -11.00205 -10.52958 -10.12669 -9.64375 -9.24200 -8.14807 -6.31186 0.34500 0.94761 1.11656 1.41162 1.42589 1.54374 1.64291 1.95723 2.04139 2.37879 2.44724 2.95841 3.13154 3.35781 3.84652 4.14893 4.26334 4.31931 4.43343 4.45317 4.46230 4.49125 4.54504 4.62757 4.72623 4.77659 4.83831 4.88922 4.92666 5.04153 5.29236 5.42583 5.47132 5.58114 5.64406 5.84850 5.93005 6.07479 6.15278 6.54072 6.75373 6.81165 7.02782 7.34970 7.55769 8.90248 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.017100 B = 0.003615 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.993209 B = 7744.197413 C = 8673.680815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.349 6.349 3 C 0.552 3.448 4 O -0.553 6.553 5 C -0.335 4.335 6 C 0.180 3.820 7 N -0.351 5.351 8 C 0.087 3.913 9 N -0.337 5.337 10 C 0.352 3.648 11 N -0.642 5.642 12 C 0.685 3.315 13 O -0.599 6.599 14 N -0.609 5.609 15 C 0.081 3.919 16 C 0.279 3.721 17 H 0.011 0.989 18 C -0.131 4.131 19 C -0.540 4.540 20 H 0.060 0.940 21 C 0.016 3.984 22 N -0.917 5.917 23 Si 0.968 3.032 24 H -0.267 1.267 25 H -0.284 1.284 26 H -0.272 1.272 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.138 0.862 30 H 0.254 0.746 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.143 0.857 34 H 0.429 0.571 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.017 0.983 40 H 0.048 0.952 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.641 -25.022 -1.869 27.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.265 6.265 3 C 0.399 3.601 4 O -0.445 6.445 5 C -0.350 4.350 6 C 0.024 3.976 7 N -0.127 5.127 8 C -0.052 4.052 9 N -0.167 5.167 10 C 0.093 3.907 11 N -0.300 5.300 12 C 0.386 3.614 13 O -0.475 6.475 14 N -0.344 5.344 15 C -0.062 4.062 16 C 0.177 3.823 17 H 0.029 0.971 18 C -0.190 4.190 19 C -0.578 4.578 20 H 0.078 0.922 21 C -0.184 4.184 22 N -0.555 5.555 23 Si 0.793 3.207 24 H -0.191 1.191 25 H -0.211 1.211 26 H -0.197 1.197 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.156 0.844 30 H 0.270 0.730 31 H 0.116 0.884 32 H 0.099 0.901 33 H 0.161 0.839 34 H 0.272 0.728 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.037 0.963 40 H 0.067 0.933 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.535 -24.274 -1.916 25.802 hybrid contribution -1.172 1.009 0.624 1.667 sum -9.707 -23.265 -1.292 25.242 Atomic orbital electron populations 1.23566 0.74380 1.05828 1.02453 1.86496 1.24970 1.30716 1.84319 1.19836 0.87032 0.81766 0.71418 1.90758 1.66984 1.37116 1.49676 1.19077 0.91136 0.91457 1.33346 1.23943 0.82189 1.01033 0.90447 1.48761 1.08234 1.03534 1.52204 1.22503 0.81698 0.95254 1.05701 1.78118 1.16130 0.91042 1.31404 1.19202 0.90908 0.84771 0.95845 1.42343 1.10840 1.00852 1.75928 1.16228 0.84923 0.81510 0.78716 1.90912 1.14895 1.83988 1.57749 1.47486 1.08729 1.03512 1.74654 1.21790 0.78865 1.03229 1.02313 1.18527 0.87606 0.81409 0.94752 0.97082 1.21885 1.01365 1.00480 0.95258 1.21600 1.19852 1.09514 1.06861 0.92173 1.25740 0.94404 0.98486 0.99744 1.70037 1.22078 1.26463 1.36972 0.85355 0.77931 0.78468 0.78922 1.19102 1.21056 1.19689 0.92234 0.92142 0.84438 0.73007 0.88411 0.90055 0.83913 0.72809 0.91466 0.91048 0.89876 0.90933 0.96348 0.93257 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.57 113.37 1.20 1.58 16 2 O -0.35 -6.26 10.39 -56.92 -0.59 -6.86 16 3 C 0.55 14.18 7.95 70.14 0.56 14.74 16 4 O -0.55 -17.13 14.99 19.68 0.30 -16.84 16 5 C -0.33 -9.12 6.14 -20.07 -0.12 -9.24 16 6 C 0.18 3.15 11.32 84.33 0.95 4.10 16 7 N -0.35 -8.10 3.97 -367.76 -1.46 -9.56 16 8 C 0.09 1.01 11.43 127.77 1.46 2.48 16 9 N -0.34 -12.98 10.72 -53.88 -0.58 -13.55 16 10 C 0.35 13.23 7.79 133.92 1.04 14.27 16 11 N -0.64 -26.29 5.28 -320.58 -1.69 -27.98 16 12 C 0.69 34.07 8.25 179.05 1.48 35.55 16 13 O -0.60 -34.87 14.39 -3.98 -0.06 -34.93 16 14 N -0.61 -29.31 2.75 -844.85 -2.33 -31.63 16 15 C 0.08 2.99 9.20 127.77 1.18 4.16 16 16 C 0.28 15.59 2.64 44.25 0.12 15.71 16 17 H 0.01 0.74 6.90 -2.39 -0.02 0.72 16 18 C -0.13 -6.72 8.97 71.98 0.65 -6.07 16 19 C -0.54 -30.86 7.99 25.60 0.20 -30.65 16 20 H 0.06 3.36 7.33 -2.91 -0.02 3.34 16 21 C 0.02 0.90 5.30 84.65 0.45 1.35 16 22 N -0.92 -54.36 11.32 21.45 0.24 -54.11 16 23 Si 0.97 44.53 29.54 68.60 2.03 46.55 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 25 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 26 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.14 0.63 8.14 -2.39 -0.02 0.62 16 30 H 0.25 1.06 8.06 -2.91 -0.02 1.03 16 31 H 0.10 0.85 8.14 -2.39 -0.02 0.84 16 32 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.14 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.43 15.69 4.68 -92.71 -0.43 15.26 16 35 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.07 2.31 6.36 -2.38 -0.02 2.29 16 37 H 0.08 3.14 7.02 -2.39 -0.02 3.12 16 38 H 0.07 4.05 6.07 -2.39 -0.01 4.03 16 39 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.05 2.28 7.67 -2.39 -0.02 2.26 16 41 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -87.78 349.73 5.65 -82.13 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.63 Total: 18.81 kcal Atomic # 6 Polarization: 38.80 SS G_CDS: 9.16 Total: 47.96 kcal Atomic # 7 Polarization: -131.03 SS G_CDS: -5.82 Total: -136.84 kcal Atomic # 8 Polarization: -58.26 SS G_CDS: -0.35 Total: -58.62 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -87.78 5.65 -82.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414525541.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.658 kcal (2) G-P(sol) polarization free energy of solvation -87.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds