Wall clock time and date at job start Tue Mar 31 2020 10:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46871 * 2 1 4 4 H 1.08990 * 109.47355 * 304.99798 * 3 2 1 5 5 C 1.53000 * 109.46776 * 184.99808 * 3 2 1 6 6 N 1.46499 * 109.46840 * 174.99842 * 5 3 2 7 7 C 1.34779 * 119.99872 * 180.02562 * 6 5 3 8 8 O 1.21590 * 120.00297 * 0.02562 * 7 6 5 9 9 N 1.34783 * 119.99768 * 180.02562 * 7 6 5 10 10 C 1.40193 * 119.99530 * 180.02562 * 9 7 6 11 11 C 1.40400 * 125.97677 * 359.71478 * 10 9 7 12 12 C 1.35246 * 107.87061 * 179.82504 * 11 10 9 13 13 N 1.34970 * 107.85347 * 0.43596 * 12 11 10 14 14 C 1.46504 * 125.97317 * 179.70397 * 13 12 11 15 15 C 1.50700 * 109.46988 * 124.99731 * 14 13 12 16 16 H 1.08000 * 119.99940 * 0.02562 * 15 14 13 17 17 C 1.37871 * 119.99777 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00476 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99847 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46719 * 90.00125 * 19 17 15 21 21 H 1.48497 * 109.46874 * 209.99759 * 19 17 15 22 22 H 1.48498 * 109.47125 * 329.99915 * 19 17 15 23 23 N 1.31210 * 125.97259 * 180.02562 * 10 9 7 24 24 C 1.50698 * 109.47135 * 65.00181 * 3 2 1 25 25 O 1.20828 * 120.00299 * 119.99561 * 24 3 2 26 26 O 1.34236 * 120.00189 * 299.99839 * 24 3 2 27 27 H 1.09001 * 109.47215 * 59.99942 * 1 2 3 28 28 H 1.09001 * 109.47048 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47362 * 299.99912 * 1 2 3 30 30 H 1.08993 * 109.46856 * 239.99957 * 2 1 3 31 31 H 1.09001 * 109.46973 * 119.99563 * 2 1 3 32 32 H 1.09002 * 109.47398 * 295.00168 * 5 3 2 33 33 H 1.09001 * 109.47194 * 55.00349 * 5 3 2 34 34 H 0.97000 * 120.00420 * 0.02562 * 6 5 3 35 35 H 0.96992 * 119.99896 * 0.02562 * 9 7 6 36 36 H 1.08003 * 126.06455 * 0.02562 * 11 10 9 37 37 H 1.07999 * 126.07074 * 180.15275 * 12 11 10 38 38 H 1.08996 * 109.46991 * 245.00062 * 14 13 12 39 39 H 1.09005 * 109.47064 * 4.99651 * 14 13 12 40 40 H 0.96994 * 120.00112 * 179.97438 * 18 17 15 41 41 H 0.96698 * 116.99795 * 180.02562 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5648 1.4443 -0.1257 6 7 4.0432 2.8238 -0.2458 7 6 5.3623 3.0712 -0.3694 8 8 6.1552 2.1496 -0.3817 9 7 5.8024 4.3404 -0.4794 10 6 7.1745 4.5977 -0.6086 11 6 8.1956 3.6344 -0.6323 12 6 9.3743 4.2824 -0.7739 13 7 9.1150 5.6059 -0.8281 14 6 10.1090 6.6724 -0.9717 15 6 9.7589 7.5285 -2.1615 16 1 8.8832 7.3012 -2.7513 17 6 10.5564 8.6020 -2.4969 18 7 11.6225 8.8792 -1.7783 19 14 10.1228 9.6628 -3.9721 20 1 9.2373 10.7737 -3.5397 21 1 11.3656 10.2216 -4.5623 22 1 9.4209 8.8365 -4.9868 23 7 7.7293 5.7812 -0.7227 24 6 1.6413 2.1163 1.2877 25 8 2.4897 2.5531 2.0289 26 8 0.3436 2.2311 1.6114 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 4.0029 0.9836 0.7597 33 1 3.8570 0.8801 -1.0113 34 1 3.4106 3.5591 -0.2364 35 1 5.1699 5.0757 -0.4692 36 1 8.0631 2.5653 -0.5547 37 1 10.3500 3.8228 -0.8288 38 1 10.1155 7.2866 -0.0713 39 1 11.0955 6.2323 -1.1184 40 1 12.1838 9.6341 -2.0145 41 1 0.1370 2.6712 2.4472 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573803495.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:48 Heat of formation + Delta-G solvation = -42.840624 kcal Electronic energy + Delta-G solvation = -24777.550449 eV Core-core repulsion = 20887.576854 eV Total energy + Delta-G solvation = -3889.973594 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.07293 -40.55917 -39.42470 -36.84415 -36.28283 -34.62647 -34.01946 -33.24551 -30.93002 -29.49490 -29.16446 -26.62078 -25.17691 -23.64199 -22.88576 -21.53418 -21.00429 -20.27680 -19.69272 -18.57262 -17.94616 -17.48647 -16.79027 -16.53249 -16.19740 -15.60513 -15.43704 -14.75501 -14.53799 -14.41500 -14.19471 -14.03287 -13.87635 -13.65920 -13.08687 -12.75619 -12.55043 -12.26421 -12.16358 -12.15356 -11.77447 -11.69731 -11.57910 -11.32267 -11.01269 -10.86923 -10.83698 -10.37370 -10.22732 -10.03091 -9.63876 -9.45208 -9.20117 -8.60283 -8.03931 -7.35238 -6.21111 -4.25973 1.76987 2.41056 2.53233 2.73379 3.18124 3.25648 3.31219 3.36438 3.62701 3.91119 3.99719 4.20935 4.33904 4.42793 4.47014 4.79098 4.87160 4.96665 5.13827 5.21906 5.32987 5.46967 5.49065 5.60227 5.64748 5.86695 5.91754 6.07078 6.22554 6.33532 6.59863 6.62848 6.92160 7.05020 7.14971 7.46395 7.55810 7.73148 7.86538 8.02388 8.12197 8.65080 8.71926 8.84964 9.39368 10.87532 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.027144 B = 0.002294 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.292202 B =12201.080099 C =12551.950004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.113 4.113 3 C -0.094 4.094 4 H 0.117 0.883 5 C 0.154 3.846 6 N -0.740 5.740 7 C 0.717 3.283 8 O -0.568 6.568 9 N -0.643 5.643 10 C 0.277 3.723 11 C -0.286 4.286 12 C 0.050 3.950 13 N -0.321 5.321 14 C 0.259 3.741 15 C -0.527 4.527 16 H 0.069 0.931 17 C 0.061 3.939 18 N -0.896 5.896 19 Si 0.908 3.092 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.273 1.273 23 N -0.309 5.309 24 C 0.475 3.525 25 O -0.498 6.498 26 O -0.512 6.512 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.394 0.606 35 H 0.406 0.594 36 H 0.161 0.839 37 H 0.167 0.833 38 H 0.044 0.956 39 H 0.057 0.943 40 H 0.267 0.733 41 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.103 -16.734 4.287 28.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.151 4.151 3 C -0.113 4.113 4 H 0.135 0.865 5 C 0.030 3.970 6 N -0.396 5.396 7 C 0.417 3.583 8 O -0.444 6.444 9 N -0.293 5.293 10 C 0.023 3.977 11 C -0.317 4.317 12 C -0.099 4.099 13 N -0.103 5.103 14 C 0.141 3.859 15 C -0.565 4.565 16 H 0.087 0.913 17 C -0.142 4.142 18 N -0.534 5.534 19 Si 0.735 3.265 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 N -0.140 5.140 24 C 0.316 3.684 25 O -0.384 6.384 26 O -0.325 6.325 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.228 0.772 35 H 0.240 0.760 36 H 0.178 0.822 37 H 0.185 0.815 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -21.983 -16.198 4.067 27.608 hybrid contribution -0.744 0.958 -0.123 1.220 sum -22.727 -15.240 3.945 27.647 Atomic orbital electron populations 1.22000 0.94238 1.02203 1.03592 1.21455 0.97300 0.92306 1.04016 1.21513 0.96987 0.98859 0.93961 0.86493 1.21087 0.89426 0.82867 1.03613 1.44839 1.05793 1.08735 1.80226 1.15518 0.82330 0.82591 0.77910 1.90862 1.53511 1.43171 1.56808 1.41352 1.04929 1.07136 1.75882 1.18779 0.83325 0.92889 1.02741 1.21512 0.89491 1.01044 1.19687 1.22550 0.99973 0.84994 1.02430 1.49042 1.03654 1.06043 1.51573 1.19726 0.83768 0.83568 0.98831 1.21264 1.11399 1.12099 1.11751 0.91321 1.24951 0.94689 0.97157 0.97371 1.69920 1.14981 1.29159 1.39351 0.86325 0.77834 0.80266 0.82043 1.20378 1.21009 1.19743 1.77315 0.90034 1.18456 1.28171 1.23443 0.80097 0.76660 0.88155 1.90827 1.51452 1.44853 1.51303 1.84602 1.28278 1.74103 1.45473 0.92394 0.92342 0.90457 0.89610 0.90910 0.90344 0.89623 0.77235 0.75954 0.82182 0.81543 0.93783 0.92543 0.92366 0.73354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.65 9.55 37.16 0.35 -0.29 16 2 C -0.11 -0.48 5.39 -26.73 -0.14 -0.62 16 3 C -0.09 -0.52 2.37 -91.77 -0.22 -0.74 16 4 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 5 C 0.15 1.34 4.63 -4.04 -0.02 1.32 16 6 N -0.74 -7.99 4.81 -65.22 -0.31 -8.30 16 7 C 0.72 11.19 8.53 -86.91 -0.74 10.45 16 8 O -0.57 -10.64 13.47 5.29 0.07 -10.57 16 9 N -0.64 -10.66 5.46 -15.50 -0.08 -10.74 16 10 C 0.28 5.83 8.11 -154.36 -1.25 4.57 16 11 C -0.29 -5.94 9.61 -39.83 -0.38 -6.33 16 12 C 0.05 1.05 11.44 -17.24 -0.20 0.85 16 13 N -0.32 -7.70 3.67 -62.56 -0.23 -7.93 16 14 C 0.26 6.71 6.26 -5.19 -0.03 6.68 16 15 C -0.53 -14.88 9.24 -34.44 -0.32 -15.19 16 16 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.90 -25.64 13.29 55.43 0.74 -24.90 16 19 Si 0.91 21.59 29.54 -169.99 -5.02 16.57 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 N -0.31 -7.35 12.42 31.44 0.39 -6.96 16 24 C 0.48 3.40 7.27 36.00 0.26 3.66 16 25 O -0.50 -5.56 16.05 -18.75 -0.30 -5.86 16 26 O -0.51 -2.35 10.57 -39.27 -0.41 -2.77 16 27 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.08 0.35 5.46 -51.93 -0.28 0.07 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.82 7.96 -51.93 -0.41 0.41 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.39 3.37 8.17 -40.82 -0.33 3.03 16 35 H 0.41 5.54 8.84 -40.82 -0.36 5.18 16 36 H 0.16 3.26 5.91 -52.48 -0.31 2.95 16 37 H 0.17 2.82 8.06 -52.49 -0.42 2.40 16 38 H 0.04 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 40 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.41 0.56 9.10 45.56 0.41 0.98 16 LS Contribution 353.11 15.07 5.32 5.32 Total: -1.00 -36.40 353.11 -7.26 -43.66 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -4.63 Total: 6.52 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: -2.78 Total: 5.96 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: 0.50 Total: -58.83 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.64 Total: -19.20 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.40 -7.26 -43.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573803495.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.817 kcal (2) G-P(sol) polarization free energy of solvation -36.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds