Wall clock time and date at job start Tue Mar 31 2020 10:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46871 * 2 1 4 4 H 1.08990 * 109.47355 * 304.99798 * 3 2 1 5 5 C 1.53000 * 109.46776 * 184.99808 * 3 2 1 6 6 N 1.46499 * 109.46840 * 174.99842 * 5 3 2 7 7 C 1.34779 * 119.99872 * 180.02562 * 6 5 3 8 8 O 1.21590 * 120.00297 * 0.02562 * 7 6 5 9 9 N 1.34783 * 119.99768 * 180.02562 * 7 6 5 10 10 C 1.40193 * 119.99530 * 180.02562 * 9 7 6 11 11 C 1.40400 * 125.97677 * 359.71478 * 10 9 7 12 12 C 1.35246 * 107.87061 * 179.82504 * 11 10 9 13 13 N 1.34970 * 107.85347 * 0.43596 * 12 11 10 14 14 C 1.46504 * 125.97317 * 179.70397 * 13 12 11 15 15 C 1.50700 * 109.46988 * 124.99731 * 14 13 12 16 16 H 1.08000 * 119.99940 * 0.02562 * 15 14 13 17 17 C 1.37871 * 119.99777 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00476 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99847 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46719 * 90.00125 * 19 17 15 21 21 H 1.48497 * 109.46874 * 209.99759 * 19 17 15 22 22 H 1.48498 * 109.47125 * 329.99915 * 19 17 15 23 23 N 1.31210 * 125.97259 * 180.02562 * 10 9 7 24 24 C 1.50698 * 109.47135 * 65.00181 * 3 2 1 25 25 O 1.20828 * 120.00299 * 119.99561 * 24 3 2 26 26 O 1.34236 * 120.00189 * 299.99839 * 24 3 2 27 27 H 1.09001 * 109.47215 * 59.99942 * 1 2 3 28 28 H 1.09001 * 109.47048 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47362 * 299.99912 * 1 2 3 30 30 H 1.08993 * 109.46856 * 239.99957 * 2 1 3 31 31 H 1.09001 * 109.46973 * 119.99563 * 2 1 3 32 32 H 1.09002 * 109.47398 * 295.00168 * 5 3 2 33 33 H 1.09001 * 109.47194 * 55.00349 * 5 3 2 34 34 H 0.97000 * 120.00420 * 0.02562 * 6 5 3 35 35 H 0.96992 * 119.99896 * 0.02562 * 9 7 6 36 36 H 1.08003 * 126.06455 * 0.02562 * 11 10 9 37 37 H 1.07999 * 126.07074 * 180.15275 * 12 11 10 38 38 H 1.08996 * 109.46991 * 245.00062 * 14 13 12 39 39 H 1.09005 * 109.47064 * 4.99651 * 14 13 12 40 40 H 0.96994 * 120.00112 * 179.97438 * 18 17 15 41 41 H 0.96698 * 116.99795 * 180.02562 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5648 1.4443 -0.1257 6 7 4.0432 2.8238 -0.2458 7 6 5.3623 3.0712 -0.3694 8 8 6.1552 2.1496 -0.3817 9 7 5.8024 4.3404 -0.4794 10 6 7.1745 4.5977 -0.6086 11 6 8.1956 3.6344 -0.6323 12 6 9.3743 4.2824 -0.7739 13 7 9.1150 5.6059 -0.8281 14 6 10.1090 6.6724 -0.9717 15 6 9.7589 7.5285 -2.1615 16 1 8.8832 7.3012 -2.7513 17 6 10.5564 8.6020 -2.4969 18 7 11.6225 8.8792 -1.7783 19 14 10.1228 9.6628 -3.9721 20 1 9.2373 10.7737 -3.5397 21 1 11.3656 10.2216 -4.5623 22 1 9.4209 8.8365 -4.9868 23 7 7.7293 5.7812 -0.7227 24 6 1.6413 2.1163 1.2877 25 8 2.4897 2.5531 2.0289 26 8 0.3436 2.2311 1.6114 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 4.0029 0.9836 0.7597 33 1 3.8570 0.8801 -1.0113 34 1 3.4106 3.5591 -0.2364 35 1 5.1699 5.0757 -0.4692 36 1 8.0631 2.5653 -0.5547 37 1 10.3500 3.8228 -0.8288 38 1 10.1155 7.2866 -0.0713 39 1 11.0955 6.2323 -1.1184 40 1 12.1838 9.6341 -2.0145 41 1 0.1370 2.6712 2.4472 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573803495.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:48 Heat of formation + Delta-G solvation = -69.374855 kcal Electronic energy + Delta-G solvation = -24778.701059 eV Core-core repulsion = 20887.576854 eV Total energy + Delta-G solvation = -3891.124205 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.23572 -41.60595 -40.70860 -37.46708 -36.91483 -36.14643 -35.30016 -34.75099 -32.69696 -30.94825 -30.10370 -28.48612 -26.00426 -24.93528 -23.97492 -22.80820 -21.92737 -21.64476 -21.00103 -19.17645 -19.06633 -18.68556 -18.24321 -18.04405 -17.28665 -16.76709 -16.62323 -16.31017 -15.83325 -15.61934 -15.54286 -14.83781 -14.51424 -14.48680 -14.37112 -14.21268 -13.80255 -13.78227 -13.57780 -13.10309 -12.90492 -12.73244 -12.63711 -12.29329 -12.23210 -12.05796 -11.96907 -11.73618 -11.63449 -11.39043 -11.37715 -11.12742 -10.71731 -10.22340 -9.71671 -9.04533 -8.31984 -6.46275 1.07132 1.14302 1.22666 1.38495 1.39438 1.51020 1.71208 2.08655 2.12263 2.36656 2.42257 2.99268 3.12022 3.43232 3.87029 3.98689 4.03704 4.28539 4.37431 4.46540 4.59493 4.65403 4.77872 4.83535 4.91025 4.94806 4.96208 5.02946 5.13476 5.20662 5.31231 5.42638 5.57471 5.61655 5.65467 5.75611 5.87119 5.97631 6.30456 6.63924 6.73735 7.01859 7.14164 7.23503 7.41730 8.75482 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.027144 B = 0.002294 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.292202 B =12201.080099 C =12551.950004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.109 4.109 3 C -0.084 4.084 4 H 0.142 0.858 5 C 0.151 3.849 6 N -0.719 5.719 7 C 0.714 3.286 8 O -0.600 6.600 9 N -0.638 5.638 10 C 0.284 3.716 11 C -0.293 4.293 12 C 0.057 3.943 13 N -0.345 5.345 14 C 0.272 3.728 15 C -0.546 4.546 16 H 0.052 0.948 17 C 0.017 3.983 18 N -0.921 5.921 19 Si 0.973 3.027 20 H -0.273 1.273 21 H -0.272 1.272 22 H -0.272 1.272 23 N -0.349 5.349 24 C 0.481 3.519 25 O -0.545 6.545 26 O -0.502 6.502 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.408 0.592 35 H 0.419 0.581 36 H 0.167 0.833 37 H 0.202 0.798 38 H 0.020 0.980 39 H 0.059 0.941 40 H 0.272 0.728 41 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.917 -17.401 3.219 30.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.147 4.147 3 C -0.103 4.103 4 H 0.160 0.840 5 C 0.027 3.973 6 N -0.375 5.375 7 C 0.413 3.587 8 O -0.478 6.478 9 N -0.289 5.289 10 C 0.029 3.971 11 C -0.324 4.324 12 C -0.092 4.092 13 N -0.127 5.127 14 C 0.154 3.846 15 C -0.585 4.585 16 H 0.071 0.929 17 C -0.184 4.184 18 N -0.560 5.560 19 Si 0.797 3.203 20 H -0.198 1.198 21 H -0.197 1.197 22 H -0.197 1.197 23 N -0.180 5.180 24 C 0.325 3.675 25 O -0.435 6.435 26 O -0.316 6.316 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.118 0.882 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.243 0.757 35 H 0.256 0.744 36 H 0.184 0.816 37 H 0.219 0.781 38 H 0.038 0.962 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -23.891 -16.881 3.016 29.409 hybrid contribution -0.322 1.045 0.286 1.130 sum -24.213 -15.836 3.302 29.120 Atomic orbital electron populations 1.21979 0.93712 1.02575 1.03566 1.21472 0.97599 0.91184 1.04494 1.21503 0.94666 1.00083 0.94066 0.84016 1.21258 0.91512 0.81365 1.03162 1.44776 1.04154 1.10321 1.78250 1.15721 0.83563 0.81703 0.77714 1.90828 1.54805 1.43891 1.58302 1.41380 1.03524 1.08246 1.75795 1.19090 0.85205 0.92207 1.00634 1.21689 0.89555 1.01272 1.19890 1.23163 1.01673 0.83783 1.00546 1.48822 1.03622 1.06582 1.53700 1.19341 0.84477 0.83804 0.97018 1.21397 1.11196 1.13292 1.12567 0.92946 1.25765 0.94435 0.98117 1.00046 1.69998 1.15610 1.29724 1.40638 0.85325 0.78006 0.78408 0.78528 1.19816 1.19661 1.19686 1.77234 0.90266 1.20043 1.30447 1.23702 0.80241 0.75574 0.88025 1.90822 1.52735 1.47073 1.52863 1.84574 1.26733 1.73792 1.46455 0.91762 0.91842 0.91090 0.88187 0.91500 0.92342 0.88603 0.75669 0.74425 0.81560 0.78115 0.96166 0.92284 0.91849 0.71606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.87 9.55 71.98 0.69 -0.18 16 2 C -0.11 -0.68 5.39 30.60 0.16 -0.51 16 3 C -0.08 -0.75 2.37 -11.54 -0.03 -0.77 16 4 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 5 C 0.15 2.40 4.63 86.38 0.40 2.80 16 6 N -0.72 -14.60 4.81 -478.52 -2.30 -16.90 16 7 C 0.71 21.74 8.53 179.05 1.53 23.27 16 8 O -0.60 -22.22 13.47 -4.00 -0.05 -22.27 16 9 N -0.64 -20.84 5.46 -321.22 -1.75 -22.59 16 10 C 0.28 11.98 8.11 133.31 1.08 13.06 16 11 C -0.29 -12.09 9.61 22.11 0.21 -11.87 16 12 C 0.06 2.34 11.44 83.52 0.96 3.29 16 13 N -0.35 -16.78 3.67 -351.83 -1.29 -18.07 16 14 C 0.27 14.47 6.26 85.63 0.54 15.01 16 15 C -0.55 -31.34 9.24 25.60 0.24 -31.10 16 16 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 17 C 0.02 0.93 5.46 84.65 0.46 1.39 16 18 N -0.92 -52.82 13.29 21.45 0.28 -52.53 16 19 Si 0.97 44.06 29.54 68.60 2.03 46.09 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 23 N -0.35 -16.86 12.42 -54.44 -0.68 -17.53 16 24 C 0.48 6.13 7.27 71.24 0.52 6.64 16 25 O -0.54 -11.84 16.05 21.96 0.35 -11.48 16 26 O -0.50 -3.57 10.57 -51.47 -0.54 -4.12 16 27 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.07 0.48 5.46 -2.39 -0.01 0.47 16 30 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 1.21 7.96 -2.39 -0.02 1.19 16 33 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.41 6.24 8.17 -92.71 -0.76 5.48 16 35 H 0.42 11.16 8.84 -92.71 -0.82 10.35 16 36 H 0.17 6.70 5.91 -2.91 -0.02 6.68 16 37 H 0.20 6.53 8.06 -2.91 -0.02 6.50 16 38 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 3.05 8.07 -2.38 -0.02 3.03 16 40 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 41 H 0.42 0.40 9.10 -74.06 -0.67 -0.28 16 Total: -1.00 -79.03 353.11 1.65 -77.38 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: -1.15 Total: 21.01 kcal Atomic # 6 Polarization: 14.26 SS G_CDS: 6.75 Total: 21.02 kcal Atomic # 7 Polarization: -121.89 SS G_CDS: -5.74 Total: -127.63 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -0.25 Total: -37.87 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -79.03 1.65 -77.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573803495.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.009 kcal (2) G-P(sol) polarization free energy of solvation -79.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds