Wall clock time and date at job start Tue Mar 31 2020 10:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 119.99934 * 2 1 4 4 C 1.50700 * 109.46912 * 270.00300 * 3 2 1 5 5 H 1.08000 * 120.00441 * 359.97438 * 4 3 2 6 6 C 1.37882 * 120.00073 * 180.02562 * 4 3 2 7 7 N 1.31508 * 120.00311 * 180.02562 * 6 4 3 8 8 Si 1.86807 * 119.99828 * 359.97438 * 6 4 3 9 9 H 1.48497 * 109.46835 * 89.99949 * 8 6 4 10 10 H 1.48496 * 109.47315 * 210.00305 * 8 6 4 11 11 H 1.48505 * 109.46996 * 330.00604 * 8 6 4 12 12 C 1.34777 * 120.00001 * 180.02562 * 2 1 3 13 13 O 1.21593 * 119.99923 * 179.97438 * 12 2 1 14 14 N 1.34777 * 120.00128 * 359.97438 * 12 2 1 15 15 C 1.40194 * 119.99945 * 180.27819 * 14 12 2 16 16 C 1.40400 * 125.97290 * 359.43673 * 15 14 12 17 17 C 1.35239 * 107.86845 * 179.86648 * 16 15 14 18 18 N 1.34968 * 107.85956 * 0.39102 * 17 16 15 19 19 C 1.46493 * 125.97621 * 179.71462 * 18 17 16 20 20 C 1.53000 * 109.46916 * 165.02302 * 19 18 17 21 21 C 1.53003 * 109.47321 * 285.01715 * 19 18 17 22 22 C 1.50699 * 109.47531 * 45.02291 * 19 18 17 23 23 O 1.20828 * 119.99920 * 359.97438 * 22 19 18 24 24 O 1.34225 * 120.00511 * 180.02562 * 22 19 18 25 25 N 1.31208 * 125.97117 * 179.74638 * 15 14 12 26 26 H 1.09001 * 109.47017 * 269.99778 * 1 2 3 27 27 H 1.08999 * 109.47701 * 29.99507 * 1 2 3 28 28 H 1.09005 * 109.47188 * 150.00374 * 1 2 3 29 29 H 1.08996 * 109.47092 * 30.00115 * 3 2 1 30 30 H 1.08998 * 109.47416 * 150.00325 * 3 2 1 31 31 H 0.97001 * 120.00438 * 179.97438 * 7 6 4 32 32 H 0.97001 * 119.99727 * 359.97438 * 14 12 2 33 33 H 1.08006 * 126.06402 * 0.02562 * 16 15 14 34 34 H 1.08007 * 126.07492 * 180.11339 * 17 16 15 35 35 H 1.08995 * 109.47657 * 59.99843 * 20 19 18 36 36 H 1.09004 * 109.47402 * 180.02562 * 20 19 18 37 37 H 1.09005 * 109.46806 * 299.99276 * 20 19 18 38 38 H 1.09003 * 109.46765 * 60.00100 * 21 19 18 39 39 H 1.08993 * 109.47041 * 179.97438 * 21 19 18 40 40 H 1.08999 * 109.46831 * 300.00482 * 21 19 18 41 41 H 0.96692 * 117.00346 * 179.97438 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4485 1.7038 -1.4208 5 1 2.0979 1.0958 -2.2417 6 6 3.1267 2.8775 -1.6728 7 7 3.3454 3.2574 -2.9127 8 14 3.7338 3.9288 -0.2530 9 1 5.1069 3.5068 0.1235 10 1 3.7496 5.3554 -0.6648 11 1 2.8273 3.7595 0.9111 12 6 2.1388 -1.1672 -0.0005 13 8 3.3548 -1.1672 -0.0010 14 7 1.4650 -2.3344 -0.0005 15 6 2.1660 -3.5485 0.0048 16 6 3.5624 -3.6946 -0.0007 17 6 3.8412 -5.0179 0.0104 18 7 2.6695 -5.6878 0.0138 19 6 2.5108 -7.1441 0.0193 20 6 1.0705 -7.4987 0.3944 21 6 2.8261 -7.6968 -1.3722 22 6 3.4554 -7.7486 1.0259 23 8 4.1866 -7.0361 1.6721 24 8 3.4853 -9.0787 1.2039 25 7 1.6317 -4.7469 0.0101 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5137 28 1 -0.3634 -0.8901 -0.5138 29 1 1.6084 2.0283 0.5138 30 1 3.1499 1.1384 0.5138 31 1 3.8222 4.0833 -3.0900 32 1 0.4950 -2.3344 0.0002 33 1 4.2855 -2.8925 -0.0094 34 1 4.8265 -5.4603 0.0115 35 1 0.3872 -7.0615 -0.3335 36 1 0.9524 -8.5823 0.3990 37 1 0.8459 -7.1050 1.3858 38 1 3.8522 -7.4441 -1.6395 39 1 2.7084 -8.7803 -1.3679 40 1 2.1428 -7.2595 -2.1001 41 1 4.1079 -9.4198 1.8604 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593729557.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:08 Heat of formation + Delta-G solvation = -7.577704 kcal Electronic energy + Delta-G solvation = -25747.485743 eV Core-core repulsion = 21859.041264 eV Total energy + Delta-G solvation = -3888.444479 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.147 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.67759 -40.51024 -39.38194 -36.69882 -36.12642 -34.99746 -34.11655 -32.42552 -30.10275 -29.29655 -28.23907 -27.82867 -26.01078 -24.96340 -23.09616 -22.07958 -21.08615 -19.95237 -19.19736 -18.38683 -17.61319 -17.44103 -16.94305 -16.41218 -16.14801 -15.90577 -15.20584 -14.73656 -14.54183 -14.21952 -13.93782 -13.69534 -13.32655 -13.21135 -12.90613 -12.78126 -12.71726 -12.59223 -12.38733 -12.28275 -12.07491 -11.98703 -11.81186 -11.46581 -11.00784 -10.90223 -10.57622 -10.51014 -10.48566 -10.12187 -9.53331 -9.28509 -8.60386 -8.56279 -8.11129 -7.64537 -6.05977 -4.04842 1.61643 1.68892 2.04609 2.65515 3.05040 3.14688 3.32556 3.38330 3.40493 3.96462 4.12660 4.22687 4.36893 4.42360 4.50816 4.87080 5.08661 5.12889 5.23369 5.26806 5.29042 5.43531 5.47845 5.61682 5.76906 5.80093 5.88518 5.92866 6.08026 6.09745 6.46536 6.63693 6.85985 7.02620 7.17837 7.25912 7.34420 7.38334 7.62412 7.90370 8.47959 8.50058 8.97451 9.13584 9.53964 11.07463 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.028724 B = 0.002858 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.565583 B = 9794.766067 C =10072.221797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.605 5.605 3 C 0.231 3.769 4 C -0.530 4.530 5 H 0.075 0.925 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.876 3.124 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.265 1.265 12 C 0.709 3.291 13 O -0.559 6.559 14 N -0.653 5.653 15 C 0.338 3.662 16 C -0.259 4.259 17 C 0.082 3.918 18 N -0.374 5.374 19 C 0.212 3.788 20 C -0.140 4.140 21 C -0.157 4.157 22 C 0.473 3.527 23 O -0.492 6.492 24 O -0.507 6.507 25 N -0.331 5.331 26 H 0.048 0.952 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.034 0.966 30 H 0.040 0.960 31 H 0.264 0.736 32 H 0.407 0.593 33 H 0.178 0.822 34 H 0.170 0.830 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.169 -24.824 7.217 26.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.340 5.340 3 C 0.110 3.890 4 C -0.568 4.568 5 H 0.093 0.907 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.703 3.297 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.190 1.190 12 C 0.410 3.590 13 O -0.434 6.434 14 N -0.307 5.307 15 C 0.080 3.920 16 C -0.289 4.289 17 C -0.061 4.061 18 N -0.161 5.161 19 C 0.125 3.875 20 C -0.198 4.198 21 C -0.216 4.216 22 C 0.312 3.688 23 O -0.378 6.378 24 O -0.318 6.318 25 N -0.161 5.161 26 H 0.066 0.934 27 H 0.101 0.899 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.243 0.757 33 H 0.195 0.805 34 H 0.187 0.813 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -5.324 -24.966 7.013 26.473 hybrid contribution 1.047 0.899 1.039 1.727 sum -4.277 -24.067 8.051 25.736 Atomic orbital electron populations 1.21659 0.80992 1.02999 1.00609 1.47094 1.05916 1.05409 1.75598 1.19645 0.92331 0.78568 0.98428 1.21358 1.37001 1.07146 0.91333 0.90707 1.24847 0.95228 0.97338 0.95576 1.69895 1.41480 1.23556 1.18683 0.86851 0.80215 0.79707 0.82893 1.19841 1.21133 1.19019 1.15652 0.85318 0.79589 0.78452 1.90822 1.11226 1.85123 1.56217 1.42014 1.09674 1.01705 1.77300 1.18901 0.91252 0.85347 0.96466 1.21989 0.95074 0.96176 1.15620 1.22461 0.91431 0.92242 0.99964 1.47653 1.03924 1.03083 1.61413 1.19788 0.96421 0.76802 0.94452 1.21924 0.91154 1.02623 1.04090 1.22303 1.03799 1.02424 0.93031 1.23384 0.82210 0.80777 0.82410 1.90821 1.39914 1.61718 1.45314 1.84463 1.62784 1.23528 1.61071 1.77249 1.09728 0.95451 1.33673 0.93385 0.89906 0.92698 0.94853 0.94219 0.92566 0.75658 0.80537 0.81300 0.89134 0.89758 0.91120 0.91195 0.89165 0.89620 0.72441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 10.20 59.84 0.61 1.85 16 2 N -0.60 -12.60 2.86 -188.74 -0.54 -13.14 16 3 C 0.23 5.63 4.23 -5.19 -0.02 5.61 16 4 C -0.53 -15.22 9.94 -34.44 -0.34 -15.56 16 5 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 6 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 7 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 8 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 9 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 12 C 0.71 15.24 8.25 -86.92 -0.72 14.52 16 13 O -0.56 -14.01 13.05 5.28 0.07 -13.94 16 14 N -0.65 -11.51 5.32 -15.51 -0.08 -11.59 16 15 C 0.34 6.07 8.11 -154.36 -1.25 4.82 16 16 C -0.26 -4.73 9.61 -39.84 -0.38 -5.12 16 17 C 0.08 1.24 9.59 -17.24 -0.17 1.07 16 18 N -0.37 -5.16 3.34 -49.75 -0.17 -5.33 16 19 C 0.21 2.05 1.18 -132.97 -0.16 1.89 16 20 C -0.14 -1.12 8.02 37.16 0.30 -0.82 16 21 C -0.16 -1.13 8.66 37.16 0.32 -0.80 16 22 C 0.47 4.45 6.86 36.01 0.25 4.70 16 23 O -0.49 -6.39 15.21 -18.75 -0.29 -6.67 16 24 O -0.51 -2.80 13.23 -39.24 -0.52 -3.32 16 25 N -0.33 -5.23 11.67 31.44 0.37 -4.86 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 28 H 0.05 0.69 6.36 -51.93 -0.33 0.36 16 29 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 30 H 0.04 1.03 6.85 -51.93 -0.36 0.67 16 31 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 32 H 0.41 5.83 6.55 -40.82 -0.27 5.56 16 33 H 0.18 3.63 5.91 -52.48 -0.31 3.32 16 34 H 0.17 2.16 7.46 -52.48 -0.39 1.77 16 35 H 0.09 0.75 8.04 -51.93 -0.42 0.33 16 36 H 0.08 0.45 8.11 -51.93 -0.42 0.02 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.09 0.43 8.11 -51.93 -0.42 0.01 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.42 0.64 9.10 45.56 0.41 1.06 16 LS Contribution 347.60 15.07 5.24 5.24 Total: -1.00 -37.77 347.60 -6.04 -43.82 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -4.57 Total: 5.77 kcal Atomic # 6 Polarization: 15.83 SS G_CDS: -1.66 Total: 14.17 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: 0.35 Total: -61.91 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.74 Total: -23.93 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -37.77 -6.04 -43.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593729557.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.239 kcal (2) G-P(sol) polarization free energy of solvation -37.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds