Wall clock time and date at job start Tue Mar 31 2020 10:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 119.99934 * 2 1 4 4 C 1.50700 * 109.46912 * 270.00300 * 3 2 1 5 5 H 1.08000 * 120.00441 * 359.97438 * 4 3 2 6 6 C 1.37882 * 120.00073 * 180.02562 * 4 3 2 7 7 N 1.31508 * 120.00311 * 180.02562 * 6 4 3 8 8 Si 1.86807 * 119.99828 * 359.97438 * 6 4 3 9 9 H 1.48497 * 109.46835 * 89.99949 * 8 6 4 10 10 H 1.48496 * 109.47315 * 210.00305 * 8 6 4 11 11 H 1.48505 * 109.46996 * 330.00604 * 8 6 4 12 12 C 1.34777 * 120.00001 * 180.02562 * 2 1 3 13 13 O 1.21593 * 119.99923 * 179.97438 * 12 2 1 14 14 N 1.34777 * 120.00128 * 359.97438 * 12 2 1 15 15 C 1.40194 * 119.99945 * 180.27819 * 14 12 2 16 16 C 1.40400 * 125.97290 * 359.43673 * 15 14 12 17 17 C 1.35239 * 107.86845 * 179.86648 * 16 15 14 18 18 N 1.34968 * 107.85956 * 0.39102 * 17 16 15 19 19 C 1.46493 * 125.97621 * 179.71462 * 18 17 16 20 20 C 1.53000 * 109.46916 * 165.02302 * 19 18 17 21 21 C 1.53003 * 109.47321 * 285.01715 * 19 18 17 22 22 C 1.50699 * 109.47531 * 45.02291 * 19 18 17 23 23 O 1.20828 * 119.99920 * 359.97438 * 22 19 18 24 24 O 1.34225 * 120.00511 * 180.02562 * 22 19 18 25 25 N 1.31208 * 125.97117 * 179.74638 * 15 14 12 26 26 H 1.09001 * 109.47017 * 269.99778 * 1 2 3 27 27 H 1.08999 * 109.47701 * 29.99507 * 1 2 3 28 28 H 1.09005 * 109.47188 * 150.00374 * 1 2 3 29 29 H 1.08996 * 109.47092 * 30.00115 * 3 2 1 30 30 H 1.08998 * 109.47416 * 150.00325 * 3 2 1 31 31 H 0.97001 * 120.00438 * 179.97438 * 7 6 4 32 32 H 0.97001 * 119.99727 * 359.97438 * 14 12 2 33 33 H 1.08006 * 126.06402 * 0.02562 * 16 15 14 34 34 H 1.08007 * 126.07492 * 180.11339 * 17 16 15 35 35 H 1.08995 * 109.47657 * 59.99843 * 20 19 18 36 36 H 1.09004 * 109.47402 * 180.02562 * 20 19 18 37 37 H 1.09005 * 109.46806 * 299.99276 * 20 19 18 38 38 H 1.09003 * 109.46765 * 60.00100 * 21 19 18 39 39 H 1.08993 * 109.47041 * 179.97438 * 21 19 18 40 40 H 1.08999 * 109.46831 * 300.00482 * 21 19 18 41 41 H 0.96692 * 117.00346 * 179.97438 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4485 1.7038 -1.4208 5 1 2.0979 1.0958 -2.2417 6 6 3.1267 2.8775 -1.6728 7 7 3.3454 3.2574 -2.9127 8 14 3.7338 3.9288 -0.2530 9 1 5.1069 3.5068 0.1235 10 1 3.7496 5.3554 -0.6648 11 1 2.8273 3.7595 0.9111 12 6 2.1388 -1.1672 -0.0005 13 8 3.3548 -1.1672 -0.0010 14 7 1.4650 -2.3344 -0.0005 15 6 2.1660 -3.5485 0.0048 16 6 3.5624 -3.6946 -0.0007 17 6 3.8412 -5.0179 0.0104 18 7 2.6695 -5.6878 0.0138 19 6 2.5108 -7.1441 0.0193 20 6 1.0705 -7.4987 0.3944 21 6 2.8261 -7.6968 -1.3722 22 6 3.4554 -7.7486 1.0259 23 8 4.1866 -7.0361 1.6721 24 8 3.4853 -9.0787 1.2039 25 7 1.6317 -4.7469 0.0101 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5137 28 1 -0.3634 -0.8901 -0.5138 29 1 1.6084 2.0283 0.5138 30 1 3.1499 1.1384 0.5138 31 1 3.8222 4.0833 -3.0900 32 1 0.4950 -2.3344 0.0002 33 1 4.2855 -2.8925 -0.0094 34 1 4.8265 -5.4603 0.0115 35 1 0.3872 -7.0615 -0.3335 36 1 0.9524 -8.5823 0.3990 37 1 0.8459 -7.1050 1.3858 38 1 3.8522 -7.4441 -1.6395 39 1 2.7084 -8.7803 -1.3679 40 1 2.1428 -7.2595 -2.1001 41 1 4.1079 -9.4198 1.8604 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593729557.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:08 Heat of formation + Delta-G solvation = -36.065183 kcal Electronic energy + Delta-G solvation = -25748.721053 eV Core-core repulsion = 21859.041264 eV Total energy + Delta-G solvation = -3889.679789 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.76485 -41.55646 -40.80418 -37.41732 -37.12845 -36.59608 -35.56232 -34.52638 -31.40910 -30.66701 -29.89844 -28.46217 -27.47569 -25.75088 -24.84704 -23.28080 -22.49752 -21.04640 -20.66110 -19.12065 -19.06872 -18.97293 -18.63817 -17.57366 -17.05777 -16.89874 -16.76698 -16.37356 -15.89726 -15.56383 -15.15566 -14.91277 -14.66298 -14.42480 -14.18676 -14.12096 -13.84650 -13.66766 -13.44127 -13.24536 -13.21100 -13.08848 -12.79273 -12.70322 -12.55789 -12.40579 -12.09180 -11.95614 -11.83145 -11.71381 -11.56599 -11.01979 -10.79410 -9.91038 -9.61544 -9.14457 -8.30467 -6.35715 0.61468 0.83897 0.91965 1.36805 1.41782 1.49422 1.56290 1.71232 1.97509 2.34796 2.38635 2.93304 3.04835 3.39991 3.54442 3.75197 3.95421 4.17299 4.26051 4.40994 4.58609 4.60057 4.62690 4.66370 4.70478 4.77861 4.80607 4.90422 4.95059 5.07514 5.14948 5.15784 5.39603 5.47270 5.54405 5.72157 5.84390 5.96509 6.28043 6.52247 6.65689 6.77618 7.00837 7.25463 7.52206 8.86725 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.028724 B = 0.002858 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.565583 B = 9794.766067 C =10072.221797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.612 5.612 3 C 0.240 3.760 4 C -0.536 4.536 5 H 0.027 0.973 6 C 0.011 3.989 7 N -0.947 5.947 8 Si 0.949 3.051 9 H -0.277 1.277 10 H -0.276 1.276 11 H -0.234 1.234 12 C 0.704 3.296 13 O -0.604 6.604 14 N -0.638 5.638 15 C 0.313 3.687 16 C -0.299 4.299 17 C 0.100 3.900 18 N -0.364 5.364 19 C 0.196 3.804 20 C -0.137 4.137 21 C -0.153 4.153 22 C 0.484 3.516 23 O -0.534 6.534 24 O -0.487 6.487 25 N -0.322 5.322 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.024 0.976 31 H 0.268 0.732 32 H 0.422 0.578 33 H 0.147 0.853 34 H 0.191 0.809 35 H 0.087 0.913 36 H 0.118 0.882 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.123 0.877 40 H 0.082 0.918 41 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.431 -27.058 8.890 29.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.347 5.347 3 C 0.118 3.882 4 C -0.575 4.575 5 H 0.045 0.955 6 C -0.187 4.187 7 N -0.587 5.587 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.202 1.202 11 H -0.157 1.157 12 C 0.404 3.596 13 O -0.482 6.482 14 N -0.292 5.292 15 C 0.057 3.943 16 C -0.329 4.329 17 C -0.045 4.045 18 N -0.149 5.149 19 C 0.111 3.889 20 C -0.194 4.194 21 C -0.211 4.211 22 C 0.325 3.675 23 O -0.423 6.423 24 O -0.301 6.301 25 N -0.152 5.152 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.262 0.738 33 H 0.164 0.836 34 H 0.208 0.792 35 H 0.106 0.894 36 H 0.137 0.863 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.141 0.859 40 H 0.100 0.900 41 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges -6.687 -27.294 8.700 29.418 hybrid contribution 1.415 1.308 0.444 1.977 sum -5.273 -25.987 9.143 28.048 Atomic orbital electron populations 1.21988 0.77498 1.04081 1.03228 1.47073 1.08088 1.04105 1.75397 1.19349 0.92753 0.80725 0.95411 1.21580 1.36806 1.06683 0.92445 0.95472 1.25853 0.95254 0.98950 0.98660 1.70053 1.42782 1.24502 1.21407 0.85698 0.79650 0.77587 0.79883 1.20282 1.20166 1.15661 1.15832 0.84954 0.80585 0.78219 1.90803 1.13359 1.85985 1.58092 1.41615 1.10206 1.00734 1.76652 1.19018 0.91260 0.85839 0.98226 1.21820 0.95145 0.97008 1.18929 1.22607 0.92691 0.91327 0.97896 1.48083 1.02988 1.04684 1.59156 1.20372 0.97893 0.74245 0.96391 1.21973 0.89626 1.04782 1.03018 1.22341 1.03540 1.04280 0.90921 1.23179 0.81199 0.81656 0.81460 1.90825 1.41656 1.62915 1.46932 1.84404 1.63114 1.21023 1.61515 1.77183 1.10344 0.94848 1.32804 0.89829 0.90300 0.90279 0.92153 0.95823 0.92292 0.73798 0.83578 0.79199 0.89421 0.86324 0.92556 0.91410 0.85876 0.89952 0.69991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.12 10.20 127.77 1.30 3.43 16 2 N -0.61 -25.52 2.86 -869.32 -2.48 -28.00 16 3 C 0.24 11.72 4.23 85.63 0.36 12.08 16 4 C -0.54 -31.82 9.94 25.60 0.25 -31.57 16 5 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 6 C 0.01 0.63 5.47 84.66 0.46 1.09 16 7 N -0.95 -60.50 13.96 21.45 0.30 -60.20 16 8 Si 0.95 44.51 27.47 68.60 1.88 46.40 16 9 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.23 -9.69 6.54 99.48 0.65 -9.04 16 12 C 0.70 31.04 8.25 179.05 1.48 32.52 16 13 O -0.60 -31.90 13.05 -4.01 -0.05 -31.95 16 14 N -0.64 -22.66 5.32 -321.23 -1.71 -24.37 16 15 C 0.31 11.45 8.11 133.31 1.08 12.53 16 16 C -0.30 -11.44 9.61 22.10 0.21 -11.23 16 17 C 0.10 3.04 9.59 83.52 0.80 3.84 16 18 N -0.36 -9.66 3.34 -311.30 -1.04 -10.70 16 19 C 0.20 3.30 1.18 2.86 0.00 3.31 16 20 C -0.14 -1.78 8.02 71.98 0.58 -1.21 16 21 C -0.15 -1.73 8.66 71.98 0.62 -1.11 16 22 C 0.48 7.88 6.86 71.24 0.49 8.37 16 23 O -0.53 -13.11 15.21 21.96 0.33 -12.78 16 24 O -0.49 -3.53 13.23 -51.37 -0.68 -4.21 16 25 N -0.32 -9.96 11.67 -54.44 -0.64 -10.60 16 26 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.08 2.34 8.07 -2.39 -0.02 2.32 16 28 H 0.08 1.86 6.36 -2.38 -0.02 1.84 16 29 H 0.06 2.63 7.13 -2.39 -0.02 2.62 16 30 H 0.02 1.24 6.85 -2.39 -0.02 1.22 16 31 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 32 H 0.42 11.73 6.55 -92.71 -0.61 11.12 16 33 H 0.15 6.53 5.91 -2.91 -0.02 6.52 16 34 H 0.19 4.80 7.46 -2.91 -0.02 4.78 16 35 H 0.09 1.23 8.04 -2.39 -0.02 1.21 16 36 H 0.12 0.74 8.11 -2.38 -0.02 0.72 16 37 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 39 H 0.12 0.61 8.11 -2.39 -0.02 0.59 16 40 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.44 -0.26 9.10 -74.06 -0.67 -0.94 16 Total: -1.00 -87.44 347.60 3.31 -84.13 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -0.25 Total: 20.23 kcal Atomic # 6 Polarization: 24.41 SS G_CDS: 7.65 Total: 32.06 kcal Atomic # 7 Polarization: -128.31 SS G_CDS: -5.57 Total: -133.87 kcal Atomic # 8 Polarization: -48.55 SS G_CDS: -0.40 Total: -48.94 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.88 Total: 46.40 kcal Total: -87.44 3.31 -84.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593729557.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.064 kcal (2) G-P(sol) polarization free energy of solvation -87.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds