Wall clock time and date at job start Tue Mar 31 2020 09:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99934 * 2 1 4 4 H 1.48504 * 109.47096 * 275.31678 * 3 2 1 5 5 H 1.48498 * 109.47338 * 35.31470 * 3 2 1 6 6 H 1.48493 * 109.47502 * 155.31783 * 3 2 1 7 7 C 1.38804 * 120.00124 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99974 * 339.11589 * 7 2 1 9 9 N 1.36937 * 120.00500 * 159.12320 * 7 2 1 10 10 C 1.46500 * 119.99679 * 319.57045 * 9 7 2 11 11 C 1.50705 * 109.47061 * 270.00068 * 10 9 7 12 12 O 1.21290 * 119.99827 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99582 * 180.02562 * 11 10 9 14 14 C 1.39877 * 119.99357 * 185.53306 * 13 11 10 15 15 C 1.40004 * 119.66015 * 325.00434 * 14 13 11 16 16 C 1.35906 * 120.92472 * 179.97438 * 15 14 13 17 17 C 1.40593 * 119.89895 * 0.04007 * 16 15 14 18 18 C 1.40537 * 121.13811 * 180.02562 * 17 16 15 19 19 C 1.36109 * 119.69645 * 179.97438 * 18 17 16 20 20 C 1.39373 * 120.99223 * 0.02562 * 19 18 17 21 21 C 1.36086 * 120.97475 * 359.97438 * 20 19 18 22 22 C 1.40591 * 119.65817 * 0.02562 * 21 20 19 23 23 C 1.37701 * 119.65756 * 144.98692 * 14 13 11 24 24 C 1.46495 * 120.00424 * 139.56572 * 9 7 2 25 25 C 1.53000 * 117.49945 * 12.85069 * 24 9 7 26 26 C 1.52998 * 117.50230 * 304.18616 * 24 9 7 27 27 H 0.96998 * 120.00052 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47509 * 149.99775 * 10 9 7 29 29 H 1.09006 * 109.47201 * 29.99890 * 10 9 7 30 30 H 0.96996 * 120.00888 * 5.52572 * 13 11 10 31 31 H 1.07998 * 119.53318 * 359.97438 * 15 14 13 32 32 H 1.07998 * 120.05183 * 180.02562 * 16 15 14 33 33 H 1.08005 * 120.15466 * 359.94166 * 18 17 16 34 34 H 1.08000 * 119.50246 * 180.02562 * 19 18 17 35 35 H 1.08004 * 119.50811 * 179.97438 * 20 19 18 36 36 H 1.07996 * 120.17249 * 180.27951 * 21 20 19 37 37 H 1.07999 * 120.25001 * 359.97438 * 23 14 13 38 38 H 1.09002 * 115.55026 * 158.51762 * 24 9 7 39 39 H 1.08997 * 117.49769 * 359.97438 * 25 24 9 40 40 H 1.08994 * 117.50187 * 145.02057 * 25 24 9 41 41 H 1.09001 * 117.50432 * 214.97958 * 26 24 9 42 42 H 1.09004 * 117.49587 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3853 2.1113 -1.3941 5 1 1.5083 2.6177 0.8093 6 1 3.5993 1.4105 0.5846 7 6 2.0102 -1.2021 0.0005 8 1 1.5234 -2.1066 0.3344 9 7 3.3122 -1.2413 -0.4220 10 6 3.7272 -0.4593 -1.5893 11 6 3.5619 -1.2906 -2.8354 12 8 3.1394 -2.4248 -2.7562 13 7 3.8845 -0.7741 -4.0377 14 6 3.6234 -1.5009 -5.2039 15 6 3.7421 -2.8959 -5.1921 16 6 3.4941 -3.6275 -6.3102 17 6 3.1133 -2.9822 -7.4998 18 6 2.8500 -3.7131 -8.6709 19 6 2.4828 -3.0583 -9.8062 20 6 2.3635 -1.6698 -9.8272 21 6 2.6102 -0.9287 -8.7128 22 6 2.9919 -1.5700 -7.5213 23 6 3.2518 -0.8371 -6.3517 24 6 4.2900 -2.0650 0.2931 25 6 3.7535 -3.0816 1.3028 26 6 4.4614 -1.8159 1.7929 27 1 -0.4850 0.8400 -0.0004 28 1 4.7729 -0.1714 -1.4807 29 1 3.1099 0.4359 -1.6652 30 1 4.2975 0.1017 -4.0944 31 1 4.0349 -3.3975 -4.2816 32 1 3.5897 -4.7029 -6.2851 33 1 2.9392 -4.7894 -8.6703 34 1 2.2809 -3.6231 -10.7043 35 1 2.0709 -1.1748 -10.7414 36 1 2.5094 0.1461 -8.7424 37 1 3.1616 0.2391 -6.3529 38 1 5.1778 -2.3411 -0.2758 39 1 2.6730 -3.1373 1.4353 40 1 4.2885 -4.0264 1.3985 41 1 5.4618 -1.9286 2.2109 42 1 3.8468 -1.0388 2.2475 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299555607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:44:06 Heat of formation + Delta-G solvation = 72.845399 kcal Electronic energy + Delta-G solvation = -24690.220563 eV Core-core repulsion = 21216.112754 eV Total energy + Delta-G solvation = -3474.107809 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.54180 -39.26669 -37.22420 -36.21495 -33.97128 -33.45570 -32.44033 -31.43044 -29.74269 -28.85188 -26.74257 -24.15808 -23.35363 -22.75849 -21.94811 -21.50991 -20.39482 -19.71840 -18.00981 -17.41707 -16.91885 -16.34352 -16.07626 -15.62308 -15.08468 -14.99087 -14.54988 -14.40105 -13.79467 -13.64361 -13.47107 -13.41941 -13.29358 -12.93607 -12.48754 -12.35749 -12.12775 -11.98801 -11.47658 -11.24903 -11.18182 -10.88196 -10.84067 -10.55447 -10.26051 -10.16630 -10.07254 -9.61864 -9.52960 -9.48615 -9.14845 -8.62221 -8.18524 -7.58147 -6.81615 -6.10461 -3.57048 0.57324 1.08188 2.09113 2.90939 3.11724 3.23257 3.34737 3.39820 3.46393 4.19675 4.36136 4.62805 4.67430 4.83551 4.84045 4.95778 5.05579 5.15459 5.19998 5.34112 5.36962 5.41929 5.58538 5.74159 5.75907 5.79123 5.91071 5.92994 6.00727 6.02019 6.12263 6.20270 6.29639 6.42111 6.43177 6.44185 6.53400 6.60878 6.70356 6.90104 6.91003 7.12129 7.18987 7.69636 7.93986 8.34106 8.66550 8.86712 9.55345 9.92480 11.03912 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.019360 B = 0.003523 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.897563 B = 7946.815879 C = 8685.670433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.039 3.961 3 Si 0.867 3.133 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.261 1.261 7 C -0.266 4.266 8 H 0.085 0.915 9 N -0.546 5.546 10 C 0.121 3.879 11 C 0.484 3.516 12 O -0.493 6.493 13 N -0.691 5.691 14 C 0.175 3.825 15 C -0.110 4.110 16 C -0.095 4.095 17 C -0.070 4.070 18 C -0.098 4.098 19 C -0.132 4.132 20 C -0.118 4.118 21 C -0.111 4.111 22 C -0.028 4.028 23 C -0.159 4.159 24 C 0.125 3.875 25 C -0.190 4.190 26 C -0.217 4.217 27 H 0.265 0.735 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.406 0.594 31 H 0.144 0.856 32 H 0.128 0.872 33 H 0.124 0.876 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.210 -1.479 -15.316 18.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.163 4.163 3 Si 0.696 3.304 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.185 1.185 7 C -0.395 4.395 8 H 0.102 0.898 9 N -0.261 5.261 10 C -0.009 4.009 11 C 0.270 3.730 12 O -0.364 6.364 13 N -0.338 5.338 14 C 0.080 3.920 15 C -0.129 4.129 16 C -0.113 4.113 17 C -0.071 4.071 18 C -0.116 4.116 19 C -0.151 4.151 20 C -0.136 4.136 21 C -0.129 4.129 22 C -0.028 4.028 23 C -0.181 4.181 24 C 0.017 3.983 25 C -0.228 4.228 26 C -0.257 4.257 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.241 0.759 31 H 0.161 0.839 32 H 0.146 0.854 33 H 0.141 0.859 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.142 0.858 37 H 0.146 0.854 38 H 0.111 0.889 39 H 0.120 0.880 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.682 -2.197 -15.081 18.056 hybrid contribution 0.329 1.479 -0.095 1.518 sum 10.012 -0.718 -15.176 18.195 Atomic orbital electron populations 1.69860 1.05988 1.26885 1.50175 1.25546 0.95129 0.97742 0.97842 0.87058 0.81334 0.84834 0.77214 1.21270 1.22228 1.18509 1.18725 0.85164 0.94434 1.41136 0.89799 1.43246 1.06955 1.51756 1.24188 1.21425 1.00151 0.94694 0.84662 1.23297 0.75918 0.89202 0.84568 1.90624 1.41426 1.18562 1.85781 1.44218 1.62813 1.21783 1.04961 1.17911 0.96064 0.91640 0.86424 1.21137 0.99818 0.92633 0.99342 1.20916 0.99115 0.99711 0.91600 1.18094 1.01844 0.92712 0.94411 1.21008 0.98844 0.99478 0.92235 1.20757 1.01517 0.94570 0.98229 1.20778 1.00419 0.94124 0.98269 1.20967 1.00168 0.99670 0.92144 1.17799 0.99029 0.92434 0.93585 1.20929 1.05084 0.99724 0.92353 1.21050 0.93288 0.96917 0.87089 1.23090 1.01481 0.92308 1.05971 1.23356 1.00140 1.00711 1.01496 0.92455 0.90488 0.89575 0.75898 0.83882 0.85419 0.85851 0.86378 0.86343 0.85841 0.85403 0.88926 0.87991 0.90496 0.90650 0.88921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.97 55.49 0.78 -25.92 16 2 C 0.04 1.09 5.31 -17.43 -0.09 1.00 16 3 Si 0.87 20.52 25.08 -169.99 -4.26 16.25 16 4 H -0.28 -6.34 6.70 56.52 0.38 -5.96 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.26 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.27 -7.30 8.98 -15.06 -0.14 -7.44 16 8 H 0.08 2.56 6.66 -52.48 -0.35 2.21 16 9 N -0.55 -12.66 1.87 -167.02 -0.31 -12.98 16 10 C 0.12 2.43 5.02 -5.19 -0.03 2.40 16 11 C 0.48 9.56 7.74 -10.98 -0.09 9.47 16 12 O -0.49 -11.53 13.79 5.55 0.08 -11.45 16 13 N -0.69 -10.81 5.32 -9.88 -0.05 -10.86 16 14 C 0.18 2.78 6.29 -83.72 -0.53 2.26 16 15 C -0.11 -1.78 8.60 -39.76 -0.34 -2.12 16 16 C -0.09 -1.34 9.74 -39.53 -0.39 -1.72 16 17 C -0.07 -0.96 5.74 -106.80 -0.61 -1.58 16 18 C -0.10 -1.11 9.76 -39.48 -0.39 -1.50 16 19 C -0.13 -1.36 9.95 -39.92 -0.40 -1.76 16 20 C -0.12 -1.21 9.95 -39.93 -0.40 -1.61 16 21 C -0.11 -1.28 9.77 -39.47 -0.39 -1.67 16 22 C -0.03 -0.38 5.74 -106.84 -0.61 -1.00 16 23 C -0.16 -2.24 9.71 -38.95 -0.38 -2.62 16 24 C 0.12 2.52 6.60 -67.93 -0.45 2.07 16 25 C -0.19 -3.70 9.86 -26.69 -0.26 -3.96 16 26 C -0.22 -4.06 10.20 -26.69 -0.27 -4.33 16 27 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.08 1.24 8.07 -51.93 -0.42 0.83 16 29 H 0.09 1.84 3.54 -51.93 -0.18 1.65 16 30 H 0.41 4.84 8.82 -40.82 -0.36 4.48 16 31 H 0.14 2.53 6.14 -52.49 -0.32 2.21 16 32 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 33 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 34 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 36 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 39 H 0.10 2.26 6.40 -51.93 -0.33 1.92 16 40 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 LS Contribution 348.75 15.07 5.26 5.26 Total: -1.00 -33.03 348.75 -9.62 -42.65 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -5.35 Total: 11.16 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -5.75 Total: -14.11 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.41 Total: -49.76 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.08 Total: -11.45 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.26 Total: 16.25 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.03 -9.62 -42.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299555607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.493 kcal (2) G-P(sol) polarization free energy of solvation -33.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds