Wall clock time and date at job start Tue Mar 31 2020 09:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47429 * 2 1 4 4 C 1.38287 * 119.92575 * 90.00247 * 3 2 1 5 5 C 1.38111 * 120.06724 * 179.97438 * 4 3 2 6 6 C 1.38867 * 119.92982 * 0.02562 * 5 4 3 7 7 N 1.39931 * 120.06840 * 179.97438 * 6 5 4 8 8 C 1.34783 * 119.99961 * 144.89734 * 7 6 5 9 9 O 1.21583 * 120.00036 * 4.06047 * 8 7 6 10 10 N 1.34773 * 119.99765 * 184.06021 * 8 7 6 11 11 C 1.39227 * 119.99689 * 184.26940 * 10 8 7 12 12 C 1.39492 * 119.83366 * 144.42138 * 11 10 8 13 13 C 1.36370 * 120.16498 * 179.75797 * 12 11 10 14 14 C 1.40868 * 119.83146 * 0.51331 * 13 12 11 15 15 C 1.41150 * 120.16336 * 179.71591 * 14 13 12 16 16 H 1.08005 * 120.00051 * 214.27798 * 15 14 13 17 17 C 1.39896 * 120.00021 * 34.28375 * 15 14 13 18 18 N 1.30876 * 119.99825 * 5.54272 * 17 15 14 19 19 Si 1.86798 * 120.00085 * 185.53791 * 17 15 14 20 20 H 1.48506 * 109.47259 * 90.00038 * 19 17 15 21 21 H 1.48498 * 109.47221 * 210.00022 * 19 17 15 22 22 H 1.48500 * 109.47160 * 329.99937 * 19 17 15 23 23 C 1.40875 * 119.67254 * 359.74079 * 14 13 12 24 24 C 1.36368 * 119.82547 * 0.02562 * 23 14 13 25 25 C 1.38874 * 119.86053 * 0.25250 * 6 5 4 26 26 C 1.38106 * 119.92492 * 359.49402 * 25 6 5 27 27 H 1.09000 * 109.46794 * 299.99943 * 1 2 3 28 28 H 1.08999 * 109.47014 * 59.99574 * 1 2 3 29 29 H 1.08997 * 109.47378 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46794 * 240.00057 * 2 1 3 31 31 H 1.08999 * 109.47014 * 120.00426 * 2 1 3 32 32 H 1.08001 * 119.96508 * 359.97438 * 4 3 2 33 33 H 1.07997 * 120.03387 * 179.97438 * 5 4 3 34 34 H 0.97002 * 120.00200 * 324.62220 * 7 6 5 35 35 H 0.97001 * 120.00550 * 4.27144 * 10 8 7 36 36 H 1.07994 * 119.91342 * 359.97438 * 12 11 10 37 37 H 1.08003 * 120.08469 * 180.23234 * 13 12 11 38 38 H 0.97000 * 119.99801 * 180.02562 * 18 17 15 39 39 H 1.08002 * 120.08082 * 179.97438 * 23 14 13 40 40 H 1.08000 * 119.91147 * 179.97438 * 24 23 14 41 41 H 1.08000 * 120.03175 * 179.72594 * 25 6 5 42 42 H 1.08008 * 119.96077 * 180.22868 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2625 2.0712 1.1985 5 6 2.7234 3.3731 1.2019 6 6 2.9553 4.0291 0.0001 7 7 3.4218 5.3484 0.0002 8 6 4.2793 5.7600 -0.9547 9 8 4.5900 5.0078 -1.8580 10 7 4.7923 7.0055 -0.9083 11 6 5.6074 7.4615 -1.9408 12 6 5.5473 8.7987 -2.3334 13 6 6.3461 9.2537 -3.3407 14 6 7.2257 8.3671 -3.9923 15 6 8.0514 8.8292 -5.0397 16 1 8.2859 8.1789 -5.8695 17 6 8.5660 10.1296 -5.0029 18 7 8.3726 10.8803 -3.9485 19 14 9.5293 10.7944 -6.4588 20 1 8.5982 11.4560 -7.4079 21 1 10.5317 11.7800 -5.9806 22 1 10.2236 9.6756 -7.1454 23 6 7.2769 7.0169 -3.5938 24 6 6.4754 6.5776 -2.5817 25 6 2.7178 3.3751 -1.2017 26 6 2.2619 2.0715 -1.1983 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.0815 1.5605 2.1328 33 1 2.9025 3.8807 2.1382 34 1 3.1250 5.9678 0.6852 35 1 4.5937 7.5841 -0.1556 36 1 4.8689 9.4760 -1.8361 37 1 6.3012 10.2901 -3.6411 38 1 8.7292 11.7820 -3.9231 39 1 7.9486 6.3314 -4.0891 40 1 6.5132 5.5427 -2.2753 41 1 2.8930 3.8842 -2.1379 42 1 2.0805 1.5611 -2.1327 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113533621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:01 Heat of formation + Delta-G solvation = 13.467506 kcal Electronic energy + Delta-G solvation = -23721.327503 eV Core-core repulsion = 20244.644876 eV Total energy + Delta-G solvation = -3476.682628 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.59784 -39.08746 -37.47016 -35.35913 -34.41880 -33.29008 -32.62693 -30.92114 -29.62665 -29.13417 -28.14485 -25.08247 -23.77233 -22.94463 -21.90920 -21.16931 -20.59462 -20.10745 -18.17939 -17.65941 -17.25218 -16.08989 -15.73718 -15.49971 -15.14703 -14.82268 -14.26582 -14.08034 -13.92215 -13.79604 -13.51216 -13.26325 -13.05479 -12.73372 -12.60665 -12.19872 -12.07134 -11.77080 -11.48733 -11.46457 -11.18987 -11.16266 -10.99355 -10.90440 -10.55069 -10.19983 -10.03000 -9.84970 -9.46659 -9.19693 -8.90792 -8.78155 -7.97579 -7.55843 -6.90044 -6.67101 -4.32200 1.29520 1.43342 2.60413 2.89149 3.07152 3.10162 3.12196 3.14854 3.50211 3.85662 3.97842 4.47268 4.66525 4.69797 4.73749 4.97824 5.02872 5.17751 5.36920 5.38851 5.49778 5.61220 5.65949 5.70336 5.84712 5.97840 6.00678 6.16279 6.30862 6.32612 6.42546 6.58711 6.63666 6.72319 6.81414 7.02476 7.11206 7.14103 7.23430 7.33471 7.62681 7.81244 7.91393 8.06605 8.28421 8.35645 8.61616 8.84692 8.91716 9.01269 10.28686 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.038155 B = 0.002288 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.677787 B =12234.484911 C =12723.399563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.107 4.107 4 C -0.101 4.101 5 C -0.150 4.150 6 C 0.169 3.831 7 N -0.693 5.693 8 C 0.693 3.307 9 O -0.561 6.561 10 N -0.660 5.660 11 C 0.016 3.984 12 C -0.118 4.118 13 C -0.139 4.139 14 C 0.106 3.894 15 C -0.464 4.464 16 H 0.077 0.923 17 C 0.072 3.928 18 N -0.811 5.811 19 Si 0.913 3.087 20 H -0.269 1.269 21 H -0.279 1.279 22 H -0.263 1.263 23 C -0.206 4.206 24 C -0.082 4.082 25 C -0.116 4.116 26 C -0.099 4.099 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.403 0.597 35 H 0.393 0.607 36 H 0.091 0.909 37 H 0.121 0.879 38 H 0.278 0.722 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.143 0.857 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.807 -11.936 10.733 20.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.108 4.108 4 C -0.120 4.120 5 C -0.171 4.171 6 C 0.074 3.926 7 N -0.341 5.341 8 C 0.394 3.606 9 O -0.437 6.437 10 N -0.305 5.305 11 C -0.077 4.077 12 C -0.138 4.138 13 C -0.159 4.159 14 C 0.103 3.897 15 C -0.494 4.494 16 H 0.095 0.905 17 C -0.144 4.144 18 N -0.438 5.438 19 Si 0.738 3.262 20 H -0.195 1.195 21 H -0.204 1.204 22 H -0.187 1.187 23 C -0.226 4.226 24 C -0.102 4.102 25 C -0.136 4.136 26 C -0.117 4.117 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.238 0.762 35 H 0.227 0.773 36 H 0.109 0.891 37 H 0.139 0.861 38 H 0.089 0.911 39 H 0.114 0.886 40 H 0.127 0.873 41 H 0.160 0.840 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.409 -12.311 9.973 20.125 hybrid contribution 0.313 1.141 0.252 1.210 sum -12.096 -11.169 10.225 19.381 Atomic orbital electron populations 1.21754 0.94992 1.01422 1.02197 1.20486 0.95940 0.92845 1.02626 1.19826 1.01388 0.96405 0.93197 1.20710 0.99834 0.93973 0.97441 1.20836 1.04617 0.95280 0.96338 1.17518 0.97096 0.84100 0.93929 1.42682 1.47957 1.11076 1.32337 1.16007 0.79167 0.83201 0.82226 1.90908 1.63705 1.53731 1.35346 1.42090 1.50813 1.13455 1.24179 1.17016 0.99710 0.93840 0.97098 1.20252 1.01072 0.93155 0.99357 1.20916 0.96433 1.00500 0.98096 1.17700 0.89785 0.90656 0.91535 1.19501 1.26374 0.97424 1.06138 0.90525 1.25861 0.95696 0.96414 0.96405 1.69786 1.37947 1.08950 1.27083 0.86241 0.79464 0.79127 0.81402 1.19472 1.20383 1.18732 1.20809 1.03688 0.97022 1.01118 1.20438 0.94424 0.98118 0.97178 1.21404 0.98428 0.95410 0.98387 1.20930 0.98954 0.94366 0.97500 0.92664 0.92541 0.92652 0.91179 0.91313 0.86112 0.86001 0.76216 0.77320 0.89113 0.86090 0.91115 0.88554 0.87296 0.83970 0.86021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.90 37.16 0.37 -0.67 16 2 C -0.08 -0.66 6.06 -27.88 -0.17 -0.82 16 3 C -0.11 -1.13 5.14 -104.59 -0.54 -1.67 16 4 C -0.10 -1.02 9.69 -39.61 -0.38 -1.41 16 5 C -0.15 -1.64 9.97 -39.40 -0.39 -2.03 16 6 C 0.17 2.28 6.29 -83.69 -0.53 1.75 16 7 N -0.69 -9.10 5.34 -14.23 -0.08 -9.17 16 8 C 0.69 12.15 8.23 -86.92 -0.72 11.43 16 9 O -0.56 -11.99 11.23 5.29 0.06 -11.93 16 10 N -0.66 -11.43 5.31 -14.10 -0.07 -11.51 16 11 C 0.02 0.35 6.31 -83.57 -0.53 -0.18 16 12 C -0.12 -2.66 9.90 -39.79 -0.39 -3.05 16 13 C -0.14 -3.56 8.57 -39.26 -0.34 -3.90 16 14 C 0.11 2.84 5.50 -106.80 -0.59 2.25 16 15 C -0.46 -12.39 9.03 -37.86 -0.34 -12.73 16 16 H 0.08 1.98 7.85 -52.48 -0.41 1.57 16 17 C 0.07 1.81 5.31 -17.34 -0.09 1.72 16 18 N -0.81 -20.96 10.95 55.55 0.61 -20.35 16 19 Si 0.91 18.95 29.56 -169.99 -5.03 13.92 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 22 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 23 C -0.21 -5.25 9.74 -39.26 -0.38 -5.63 16 24 C -0.08 -1.96 8.61 -39.79 -0.34 -2.30 16 25 C -0.12 -1.69 8.69 -39.39 -0.34 -2.03 16 26 C -0.10 -1.21 9.69 -39.62 -0.38 -1.59 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 31 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 32 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 33 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.40 3.77 8.85 -40.82 -0.36 3.41 16 35 H 0.39 5.26 8.84 -40.82 -0.36 4.90 16 36 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 37 H 0.12 3.17 6.46 -52.48 -0.34 2.83 16 38 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 39 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 40 H 0.11 2.62 6.22 -52.49 -0.33 2.29 16 41 H 0.14 2.41 6.26 -52.49 -0.33 2.08 16 42 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 353.99 15.07 5.33 5.33 Total: -1.00 -30.58 353.99 -10.75 -41.33 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -5.48 Total: 13.25 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: -6.09 Total: -20.87 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.46 Total: -41.03 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.06 Total: -11.93 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.58 -10.75 -41.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113533621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.797 kcal (2) G-P(sol) polarization free energy of solvation -30.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds