Wall clock time and date at job start Tue Mar 31 2020 09:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47221 * 2 1 4 4 C 1.53001 * 109.47440 * 183.97729 * 3 2 1 5 5 C 1.53006 * 109.47421 * 63.97527 * 3 2 1 6 6 N 1.46506 * 109.47109 * 303.97457 * 3 2 1 7 7 C 1.46498 * 119.99990 * 120.14044 * 6 3 2 8 8 C 1.50704 * 109.47404 * 264.60702 * 7 6 3 9 9 H 1.08002 * 119.99635 * 3.98323 * 8 7 6 10 10 C 1.37869 * 120.00292 * 183.98088 * 8 7 6 11 11 N 1.31515 * 119.99901 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00307 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47285 * 89.99954 * 12 10 8 14 14 H 1.48504 * 109.47197 * 210.00506 * 12 10 8 15 15 H 1.48507 * 109.47015 * 329.99925 * 12 10 8 16 16 C 1.34779 * 119.99886 * 300.14724 * 6 3 2 17 17 O 1.21608 * 119.99883 * 175.76682 * 16 6 3 18 18 C 1.47340 * 119.99897 * 356.03904 * 16 6 3 19 19 C 1.39235 * 123.09044 * 93.86081 * 18 16 6 20 20 C 1.50707 * 121.52825 * 0.02562 * 19 18 16 21 21 N 1.29508 * 116.94137 * 179.80896 * 19 18 16 22 22 S 1.69483 * 107.84134 * 0.42922 * 21 19 18 23 23 C 1.37899 * 123.08239 * 274.15377 * 18 16 6 24 24 C 1.50700 * 127.32072 * 359.96704 * 23 18 16 25 25 H 1.09003 * 109.46853 * 305.86472 * 1 2 3 26 26 H 1.08995 * 109.47176 * 65.86504 * 1 2 3 27 27 H 1.08994 * 109.46957 * 185.86723 * 1 2 3 28 28 H 1.08999 * 109.47270 * 239.99699 * 2 1 3 29 29 H 1.08999 * 109.46959 * 119.99506 * 2 1 3 30 30 H 1.08989 * 109.47542 * 154.90406 * 4 3 2 31 31 H 1.09004 * 109.46637 * 274.90794 * 4 3 2 32 32 H 1.08998 * 109.46610 * 34.90133 * 4 3 2 33 33 H 1.09002 * 109.46870 * 299.45473 * 5 3 2 34 34 H 1.08991 * 109.46974 * 59.45162 * 5 3 2 35 35 H 1.08997 * 109.46989 * 179.45832 * 5 3 2 36 36 H 1.09001 * 109.46873 * 24.60587 * 7 6 3 37 37 H 1.09001 * 109.47157 * 144.60748 * 7 6 3 38 38 H 0.97001 * 120.00163 * 179.97438 * 11 10 8 39 39 H 1.09000 * 109.47308 * 96.83201 * 20 19 18 40 40 H 1.08998 * 109.46984 * 216.84024 * 20 19 18 41 41 H 1.09001 * 109.46895 * 336.83543 * 20 19 18 42 42 H 1.08995 * 109.47528 * 89.99910 * 24 23 18 43 43 H 1.09006 * 109.47089 * 210.00042 * 24 23 18 44 44 H 1.08994 * 109.47120 * 329.99664 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5668 1.4437 -0.1001 5 6 1.6134 2.1344 1.2963 6 7 1.4751 2.1602 -1.1455 7 6 0.6469 3.3491 -0.9289 8 6 -0.8076 2.9547 -0.9279 9 1 -1.0850 1.9141 -1.0094 10 6 -1.7842 3.9223 -0.8228 11 7 -1.4464 5.1894 -0.7241 12 14 -3.5870 3.4334 -0.8208 13 1 -4.0313 3.1862 0.5745 14 1 -4.3975 4.5284 -1.4118 15 1 -3.7655 2.1968 -1.6236 16 6 1.7172 1.7267 -2.3984 17 8 1.1864 2.2755 -3.3449 18 6 2.6203 0.5839 -2.6209 19 6 2.1711 -0.7290 -2.7354 20 6 0.7069 -1.0722 -2.6381 21 7 3.0688 -1.6411 -2.9337 22 16 4.5822 -0.8794 -2.9780 23 6 3.9887 0.7159 -2.7290 24 6 4.7933 1.9875 -2.6466 25 1 -0.3633 0.6021 0.8329 26 1 -0.3633 0.4202 -0.9378 27 1 -0.3633 -1.0222 0.1050 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.9015 2.3844 -0.5371 31 1 3.9962 1.3324 0.8957 32 1 3.8902 0.6150 -0.7299 33 1 0.5254 2.1422 1.3628 34 1 2.0256 1.5948 2.1488 35 1 1.9850 3.1591 1.3005 36 1 0.9019 3.7997 0.0303 37 1 0.8277 4.0683 -1.7278 38 1 -2.1334 5.8702 -0.6505 39 1 0.2851 -1.1525 -3.6400 40 1 0.5904 -2.0227 -2.1174 41 1 0.1862 -0.2895 -2.0864 42 1 5.0796 2.1699 -1.6108 43 1 5.6895 1.8908 -3.2596 44 1 4.1930 2.8215 -3.0098 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298080708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:57:40 Heat of formation + Delta-G solvation = 31.837028 kcal Electronic energy + Delta-G solvation = -26277.707082 eV Core-core repulsion = 22937.264968 eV Total energy + Delta-G solvation = -3340.442114 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.90971 -38.00299 -36.75947 -33.79018 -33.12078 -31.81189 -30.62908 -29.03252 -28.45931 -27.50791 -26.18543 -23.40515 -23.20064 -22.13487 -20.88512 -19.74576 -18.14571 -17.32918 -16.59338 -16.21021 -15.52499 -14.87916 -14.74567 -14.47040 -14.26718 -14.00108 -13.68379 -13.40119 -13.13603 -12.95260 -12.68383 -12.49644 -12.23502 -12.12133 -11.93645 -11.84253 -11.76554 -11.43333 -11.24281 -11.06798 -11.01723 -10.91034 -10.54253 -10.52262 -10.41569 -10.37472 -10.09386 -10.01197 -9.39427 -9.08767 -8.98319 -8.42937 -8.35624 -7.66535 -6.03570 -4.06529 0.67478 1.45227 1.85231 2.31582 3.25496 3.29670 3.37460 3.41215 3.91031 4.43956 4.45190 4.90917 4.98450 5.04808 5.24562 5.29337 5.32582 5.35866 5.40707 5.47785 5.60247 5.67814 5.72286 5.79959 5.82290 5.91238 5.98435 6.03125 6.06335 6.14869 6.21168 6.28658 6.31200 6.48527 6.55395 6.69675 6.81086 7.00570 7.07877 7.43780 7.56212 7.94640 8.23218 8.37548 8.89483 9.05215 9.58016 11.04727 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.018989 B = 0.005615 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.146498 B = 4985.801080 C = 5171.430846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.145 4.145 3 C 0.169 3.831 4 C -0.180 4.180 5 C -0.149 4.149 6 N -0.575 5.575 7 C 0.241 3.759 8 C -0.522 4.522 9 H 0.068 0.932 10 C 0.062 3.938 11 N -0.895 5.895 12 Si 0.891 3.109 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.274 1.274 16 C 0.577 3.423 17 O -0.523 6.523 18 C -0.192 4.192 19 C 0.165 3.835 20 C -0.115 4.115 21 N -0.473 5.473 22 S 0.238 5.762 23 C -0.135 4.135 24 C -0.096 4.096 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.043 0.957 37 H 0.039 0.961 38 H 0.262 0.738 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.108 0.892 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.010 -9.783 1.995 15.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.184 4.184 3 C 0.083 3.917 4 C -0.238 4.238 5 C -0.206 4.206 6 N -0.306 5.306 7 C 0.122 3.878 8 C -0.561 4.561 9 H 0.086 0.914 10 C -0.139 4.139 11 N -0.534 5.534 12 Si 0.719 3.281 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.199 1.199 16 C 0.360 3.640 17 O -0.400 6.400 18 C -0.212 4.212 19 C -0.012 4.012 20 C -0.176 4.176 21 N -0.293 5.293 22 S 0.394 5.606 23 C -0.265 4.265 24 C -0.154 4.154 25 H 0.086 0.914 26 H 0.100 0.900 27 H 0.061 0.939 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.127 0.873 42 H 0.115 0.885 43 H 0.095 0.905 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.949 -11.095 1.168 17.092 hybrid contribution -2.149 1.129 0.272 2.443 sum 10.800 -9.965 1.440 14.765 Atomic orbital electron populations 1.22235 0.94709 1.00426 1.04357 1.22414 0.97699 0.96064 1.02211 1.20301 0.91861 0.91859 0.87653 1.23029 0.95968 1.02617 1.02184 1.22131 1.04175 1.00131 0.94153 1.48374 1.49417 1.29594 1.03257 1.19443 0.88972 0.81418 0.97938 1.21600 0.90601 0.93929 1.49955 0.91389 1.24898 0.98910 0.94822 0.95312 1.69925 1.33427 0.99767 1.50308 0.86612 0.85178 0.78335 0.78016 1.20742 1.21252 1.19853 1.17143 0.80733 0.82216 0.83935 1.90810 1.50249 1.57426 1.41481 1.20586 0.93754 0.95968 1.10938 1.21176 0.98157 0.88115 0.93789 1.21355 0.87287 1.04541 1.04425 1.76402 0.98826 1.27082 1.27020 1.83796 1.15202 0.93498 1.68096 1.25808 0.96535 1.02727 1.01415 1.20761 0.98696 0.91786 1.04146 0.91383 0.89999 0.93864 0.90955 0.91843 0.91216 0.92115 0.92011 0.89670 0.92788 0.91896 0.93936 0.94335 0.92865 0.89885 0.90069 0.87350 0.88472 0.90467 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 7.09 37.16 0.26 -2.32 16 2 C -0.15 -2.17 4.21 -26.73 -0.11 -2.28 16 3 C 0.17 2.69 0.73 -131.81 -0.10 2.59 16 4 C -0.18 -2.40 6.47 37.16 0.24 -2.16 16 5 C -0.15 -2.32 6.77 37.16 0.25 -2.07 16 6 N -0.57 -11.34 1.59 -161.45 -0.26 -11.60 16 7 C 0.24 5.79 4.43 -5.19 -0.02 5.77 16 8 C -0.52 -13.56 8.64 -34.44 -0.30 -13.86 16 9 H 0.07 1.72 4.71 -52.49 -0.25 1.47 16 10 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 11 N -0.90 -25.50 13.29 55.43 0.74 -24.76 16 12 Si 0.89 21.11 29.54 -169.99 -5.02 16.08 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 16 C 0.58 11.87 4.88 -12.56 -0.06 11.81 16 17 O -0.52 -13.17 16.82 5.27 0.09 -13.08 16 18 C -0.19 -3.26 3.03 -105.95 -0.32 -3.59 16 19 C 0.17 2.69 4.57 -83.20 -0.38 2.31 16 20 C -0.12 -1.76 8.44 36.01 0.30 -1.46 16 21 N -0.47 -7.33 11.97 32.50 0.39 -6.94 16 22 S 0.24 3.08 23.59 -107.50 -2.54 0.54 16 23 C -0.14 -1.91 4.01 -34.43 -0.14 -2.05 16 24 C -0.10 -1.11 9.18 36.01 0.33 -0.78 16 25 H 0.07 1.14 6.28 -51.93 -0.33 0.82 16 26 H 0.08 1.54 2.91 -51.93 -0.15 1.39 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 1.10 2.43 -51.93 -0.13 0.98 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.93 5.61 -51.94 -0.29 0.64 16 31 H 0.06 0.69 7.90 -51.93 -0.41 0.28 16 32 H 0.06 0.81 4.18 -51.93 -0.22 0.59 16 33 H 0.08 1.52 5.69 -51.93 -0.30 1.23 16 34 H 0.05 0.69 8.12 -51.93 -0.42 0.27 16 35 H 0.06 1.01 6.95 -51.93 -0.36 0.65 16 36 H 0.04 1.02 5.54 -51.93 -0.29 0.73 16 37 H 0.04 1.07 7.65 -51.93 -0.40 0.68 16 38 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.11 1.85 2.82 -51.93 -0.15 1.70 16 42 H 0.10 0.99 5.30 -51.93 -0.28 0.71 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.09 1.16 7.85 -51.93 -0.41 0.76 16 LS Contribution 328.99 15.07 4.96 4.96 Total: -1.00 -30.53 328.99 -7.39 -37.92 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -5.61 Total: 3.37 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -0.14 Total: -6.49 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.87 Total: -43.30 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.09 Total: -13.08 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -2.54 Total: 0.54 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.53 -7.39 -37.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298080708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.758 kcal (2) G-P(sol) polarization free energy of solvation -30.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds