Wall clock time and date at job start Tue Mar 31 2020 09:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47221 * 2 1 4 4 C 1.53001 * 109.47440 * 183.97729 * 3 2 1 5 5 C 1.53006 * 109.47421 * 63.97527 * 3 2 1 6 6 N 1.46506 * 109.47109 * 303.97457 * 3 2 1 7 7 C 1.46498 * 119.99990 * 120.14044 * 6 3 2 8 8 C 1.50704 * 109.47404 * 264.60702 * 7 6 3 9 9 H 1.08002 * 119.99635 * 3.98323 * 8 7 6 10 10 C 1.37869 * 120.00292 * 183.98088 * 8 7 6 11 11 N 1.31515 * 119.99901 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00307 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47285 * 89.99954 * 12 10 8 14 14 H 1.48504 * 109.47197 * 210.00506 * 12 10 8 15 15 H 1.48507 * 109.47015 * 329.99925 * 12 10 8 16 16 C 1.34779 * 119.99886 * 300.14724 * 6 3 2 17 17 O 1.21608 * 119.99883 * 175.76682 * 16 6 3 18 18 C 1.47340 * 119.99897 * 356.03904 * 16 6 3 19 19 C 1.39235 * 123.09044 * 93.86081 * 18 16 6 20 20 C 1.50707 * 121.52825 * 0.02562 * 19 18 16 21 21 N 1.29508 * 116.94137 * 179.80896 * 19 18 16 22 22 S 1.69483 * 107.84134 * 0.42922 * 21 19 18 23 23 C 1.37899 * 123.08239 * 274.15377 * 18 16 6 24 24 C 1.50700 * 127.32072 * 359.96704 * 23 18 16 25 25 H 1.09003 * 109.46853 * 305.86472 * 1 2 3 26 26 H 1.08995 * 109.47176 * 65.86504 * 1 2 3 27 27 H 1.08994 * 109.46957 * 185.86723 * 1 2 3 28 28 H 1.08999 * 109.47270 * 239.99699 * 2 1 3 29 29 H 1.08999 * 109.46959 * 119.99506 * 2 1 3 30 30 H 1.08989 * 109.47542 * 154.90406 * 4 3 2 31 31 H 1.09004 * 109.46637 * 274.90794 * 4 3 2 32 32 H 1.08998 * 109.46610 * 34.90133 * 4 3 2 33 33 H 1.09002 * 109.46870 * 299.45473 * 5 3 2 34 34 H 1.08991 * 109.46974 * 59.45162 * 5 3 2 35 35 H 1.08997 * 109.46989 * 179.45832 * 5 3 2 36 36 H 1.09001 * 109.46873 * 24.60587 * 7 6 3 37 37 H 1.09001 * 109.47157 * 144.60748 * 7 6 3 38 38 H 0.97001 * 120.00163 * 179.97438 * 11 10 8 39 39 H 1.09000 * 109.47308 * 96.83201 * 20 19 18 40 40 H 1.08998 * 109.46984 * 216.84024 * 20 19 18 41 41 H 1.09001 * 109.46895 * 336.83543 * 20 19 18 42 42 H 1.08995 * 109.47528 * 89.99910 * 24 23 18 43 43 H 1.09006 * 109.47089 * 210.00042 * 24 23 18 44 44 H 1.08994 * 109.47120 * 329.99664 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5668 1.4437 -0.1001 5 6 1.6134 2.1344 1.2963 6 7 1.4751 2.1602 -1.1455 7 6 0.6469 3.3491 -0.9289 8 6 -0.8076 2.9547 -0.9279 9 1 -1.0850 1.9141 -1.0094 10 6 -1.7842 3.9223 -0.8228 11 7 -1.4464 5.1894 -0.7241 12 14 -3.5870 3.4334 -0.8208 13 1 -4.0313 3.1862 0.5745 14 1 -4.3975 4.5284 -1.4118 15 1 -3.7655 2.1968 -1.6236 16 6 1.7172 1.7267 -2.3984 17 8 1.1864 2.2755 -3.3449 18 6 2.6203 0.5839 -2.6209 19 6 2.1711 -0.7290 -2.7354 20 6 0.7069 -1.0722 -2.6381 21 7 3.0688 -1.6411 -2.9337 22 16 4.5822 -0.8794 -2.9780 23 6 3.9887 0.7159 -2.7290 24 6 4.7933 1.9875 -2.6466 25 1 -0.3633 0.6021 0.8329 26 1 -0.3633 0.4202 -0.9378 27 1 -0.3633 -1.0222 0.1050 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.9015 2.3844 -0.5371 31 1 3.9962 1.3324 0.8957 32 1 3.8902 0.6150 -0.7299 33 1 0.5254 2.1422 1.3628 34 1 2.0256 1.5948 2.1488 35 1 1.9850 3.1591 1.3005 36 1 0.9019 3.7997 0.0303 37 1 0.8277 4.0683 -1.7278 38 1 -2.1334 5.8702 -0.6505 39 1 0.2851 -1.1525 -3.6400 40 1 0.5904 -2.0227 -2.1174 41 1 0.1862 -0.2895 -2.0864 42 1 5.0796 2.1699 -1.6108 43 1 5.6895 1.8908 -3.2596 44 1 4.1930 2.8215 -3.0098 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298080708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:57:39 Heat of formation + Delta-G solvation = 13.431775 kcal Electronic energy + Delta-G solvation = -26278.505194 eV Core-core repulsion = 22937.264968 eV Total energy + Delta-G solvation = -3341.240226 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.26691 -39.35365 -38.31152 -35.21444 -34.74941 -33.45107 -31.92577 -30.45212 -29.73317 -28.80571 -27.69165 -25.08345 -24.45706 -23.60029 -22.23580 -21.09840 -19.30334 -18.91848 -18.30342 -17.54704 -17.17879 -16.40644 -16.15595 -16.04889 -15.61176 -15.33139 -14.90160 -14.63555 -14.47346 -14.32897 -14.07909 -13.88987 -13.56009 -13.52092 -13.23684 -13.11351 -13.07151 -12.87398 -12.83151 -12.59937 -12.40451 -12.20684 -12.15646 -11.99296 -11.86775 -11.74102 -11.63048 -11.35940 -11.12990 -10.66301 -10.50897 -10.18675 -9.50099 -9.36253 -8.12169 -6.21185 -0.48722 0.32347 0.71017 1.06768 1.38418 1.41539 1.49964 1.71525 2.34784 2.49365 3.19040 3.32683 3.62033 3.82134 3.88689 4.05385 4.16143 4.20119 4.27065 4.42161 4.50500 4.53035 4.53410 4.66328 4.70736 4.79611 4.82757 4.83615 4.93501 5.00440 5.02792 5.09639 5.12762 5.19596 5.22437 5.32508 5.41273 5.45847 5.56355 5.69087 5.80846 5.95615 6.19952 6.75440 6.90161 7.35104 7.51649 8.95368 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.018989 B = 0.005615 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.146498 B = 4985.801080 C = 5171.430846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.142 4.142 3 C 0.159 3.841 4 C -0.175 4.175 5 C -0.145 4.145 6 N -0.571 5.571 7 C 0.258 3.742 8 C -0.523 4.523 9 H 0.072 0.928 10 C 0.009 3.991 11 N -0.931 5.931 12 Si 0.949 3.051 13 H -0.266 1.266 14 H -0.289 1.289 15 H -0.273 1.273 16 C 0.582 3.418 17 O -0.586 6.586 18 C -0.222 4.222 19 C 0.161 3.839 20 C -0.116 4.116 21 N -0.493 5.493 22 S 0.317 5.683 23 C -0.128 4.128 24 C -0.099 4.099 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.042 0.958 37 H -0.010 1.010 38 H 0.261 0.739 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.117 0.883 43 H 0.110 0.890 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.143 -12.327 3.165 19.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.180 4.180 3 C 0.075 3.925 4 C -0.232 4.232 5 C -0.202 4.202 6 N -0.300 5.300 7 C 0.137 3.863 8 C -0.561 4.561 9 H 0.090 0.910 10 C -0.189 4.189 11 N -0.572 5.572 12 Si 0.775 3.225 13 H -0.191 1.191 14 H -0.215 1.215 15 H -0.198 1.198 16 C 0.366 3.634 17 O -0.467 6.467 18 C -0.242 4.242 19 C -0.016 4.016 20 C -0.177 4.177 21 N -0.314 5.314 22 S 0.473 5.527 23 C -0.258 4.258 24 C -0.157 4.157 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.110 0.890 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.008 0.992 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.121 0.879 41 H 0.107 0.893 42 H 0.135 0.865 43 H 0.129 0.871 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 15.101 -13.678 2.381 20.513 hybrid contribution -2.655 1.886 -0.108 3.258 sum 12.446 -11.792 2.273 17.295 Atomic orbital electron populations 1.22145 0.95867 1.01285 1.02042 1.22410 0.96633 0.95324 1.03626 1.20683 0.93738 0.92087 0.85964 1.22980 0.93512 1.02624 1.04124 1.22093 1.02485 1.00151 0.95492 1.48310 1.48543 1.28482 1.04713 1.18928 0.89174 0.82388 0.95789 1.21938 0.91652 0.94099 1.48433 0.90998 1.25684 1.02960 0.94852 0.95395 1.70049 1.34526 1.00706 1.51894 0.85680 0.80476 0.77693 0.78613 1.19136 1.21518 1.19758 1.17583 0.80280 0.82420 0.83078 1.90760 1.52885 1.59756 1.43326 1.20223 0.94235 0.94914 1.14823 1.21043 0.98473 0.87760 0.94324 1.21328 0.87195 1.04856 1.04312 1.76243 1.00116 1.27663 1.27411 1.83552 1.12560 0.90866 1.65745 1.26228 0.95861 1.04822 0.98860 1.20919 0.99108 0.89715 1.05959 0.92586 0.93157 0.91582 0.90765 0.88992 0.91545 0.89128 0.91535 0.92430 0.89111 0.92998 0.93983 0.99240 0.92966 0.90137 0.87942 0.89299 0.86494 0.87146 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.93 7.09 71.98 0.51 -4.42 16 2 C -0.14 -3.94 4.21 30.60 0.13 -3.81 16 3 C 0.16 4.88 0.73 3.61 0.00 4.88 16 4 C -0.17 -4.14 6.47 71.98 0.47 -3.68 16 5 C -0.15 -4.37 6.77 71.98 0.49 -3.89 16 6 N -0.57 -23.17 1.59 -782.97 -1.25 -24.42 16 7 C 0.26 13.10 4.43 85.63 0.38 13.48 16 8 C -0.52 -28.33 8.64 25.60 0.22 -28.10 16 9 H 0.07 3.79 4.71 -2.91 -0.01 3.77 16 10 C 0.01 0.52 5.46 84.65 0.46 0.98 16 11 N -0.93 -55.20 13.29 21.44 0.28 -54.92 16 12 Si 0.95 44.40 29.54 68.60 2.03 46.43 16 13 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 14 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 15 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 16 C 0.58 24.72 4.88 86.64 0.42 25.14 16 17 O -0.59 -31.41 16.82 -4.06 -0.07 -31.48 16 18 C -0.22 -7.37 3.03 -20.72 -0.06 -7.43 16 19 C 0.16 5.01 4.57 43.14 0.20 5.20 16 20 C -0.12 -3.51 8.44 71.24 0.60 -2.91 16 21 N -0.49 -13.96 11.97 -51.11 -0.61 -14.58 16 22 S 0.32 6.99 23.59 -56.49 -1.33 5.66 16 23 C -0.13 -3.32 4.01 25.61 0.10 -3.21 16 24 C -0.10 -2.07 9.18 71.24 0.65 -1.42 16 25 H 0.06 1.87 6.28 -2.39 -0.01 1.85 16 26 H 0.05 1.93 2.91 -2.39 -0.01 1.93 16 27 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 2.11 2.43 -2.39 -0.01 2.10 16 29 H 0.09 2.05 8.14 -2.39 -0.02 2.04 16 30 H 0.07 1.63 5.61 -2.39 -0.01 1.62 16 31 H 0.09 1.64 7.90 -2.38 -0.02 1.62 16 32 H 0.07 1.51 4.18 -2.39 -0.01 1.50 16 33 H 0.06 2.06 5.69 -2.39 -0.01 2.05 16 34 H 0.09 2.04 8.12 -2.39 -0.02 2.02 16 35 H 0.05 1.65 6.95 -2.39 -0.02 1.64 16 36 H 0.04 2.13 5.54 -2.39 -0.01 2.11 16 37 H -0.01 -0.63 7.65 -2.39 -0.02 -0.65 16 38 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 39 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 41 H 0.09 3.08 2.82 -2.39 -0.01 3.08 16 42 H 0.12 2.02 5.30 -2.39 -0.01 2.00 16 43 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 44 H 0.06 1.63 7.85 -2.39 -0.02 1.61 16 Total: -1.00 -70.47 328.99 4.68 -65.79 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 1.05 Total: 16.70 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: 4.57 Total: -9.19 kcal Atomic # 7 Polarization: -92.34 SS G_CDS: -1.57 Total: -93.91 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -0.07 Total: -31.48 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: 6.99 SS G_CDS: -1.33 Total: 5.66 kcal Total: -70.47 4.68 -65.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298080708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.226 kcal (2) G-P(sol) polarization free energy of solvation -70.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds