Wall clock time and date at job start Tue Mar 31 2020 10:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47021 * 130.25800 * 3 2 1 5 5 N 1.46896 * 109.47250 * 179.97438 * 4 3 2 6 6 C 1.46843 * 111.00476 * 294.21563 * 5 4 3 7 7 C 1.53028 * 109.52540 * 174.15823 * 6 5 4 8 8 C 1.53124 * 109.28069 * 59.17869 * 7 6 5 9 9 C 1.52994 * 109.57447 * 182.40877 * 8 7 6 10 10 N 1.46498 * 109.47265 * 294.71353 * 9 8 7 11 11 C 1.34782 * 119.99950 * 180.02562 * 10 9 8 12 12 O 1.21269 * 120.00069 * 359.97438 * 11 10 9 13 13 C 1.50708 * 119.99669 * 180.02562 * 11 10 9 14 14 S 1.81002 * 109.46752 * 179.97438 * 13 11 10 15 15 C 1.76200 * 99.99905 * 179.97438 * 14 13 11 16 16 H 1.08004 * 119.99922 * 359.97438 * 15 14 13 17 17 C 1.38800 * 119.99911 * 180.02562 * 15 14 13 18 18 N 1.31632 * 119.99667 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00085 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46888 * 90.00090 * 19 17 15 21 21 H 1.48497 * 109.47224 * 209.99802 * 19 17 15 22 22 H 1.48502 * 109.47247 * 330.00481 * 19 17 15 23 23 C 1.53118 * 109.15582 * 302.34596 * 8 7 6 24 24 C 1.46843 * 111.00114 * 169.99982 * 5 4 3 25 25 H 4.44651 * 5.63304 * 180.02562 * 4 1 2 26 26 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 27 27 H 1.09000 * 109.47090 * 10.26048 * 3 2 1 28 28 H 1.08996 * 109.47407 * 300.00412 * 4 3 2 29 29 H 1.09004 * 109.46733 * 59.99729 * 4 3 2 30 30 H 1.08998 * 109.46270 * 294.17628 * 6 5 4 31 31 H 1.09004 * 109.46451 * 54.13704 * 6 5 4 32 32 H 1.09003 * 109.50729 * 299.23689 * 7 6 5 33 33 H 1.09009 * 109.50352 * 179.11710 * 7 6 5 34 34 H 1.09001 * 109.52041 * 62.24788 * 8 7 6 35 35 H 1.08999 * 109.47589 * 54.71727 * 9 8 7 36 36 H 1.09005 * 109.46954 * 174.71933 * 9 8 7 37 37 H 0.97006 * 120.00201 * 0.02562 * 10 9 8 38 38 H 1.08998 * 109.46512 * 299.99493 * 13 11 10 39 39 H 1.08996 * 109.46896 * 59.99542 * 13 11 10 40 40 H 0.97003 * 119.99629 * 179.97438 * 18 17 15 41 41 H 1.08994 * 109.50685 * 297.70927 * 23 8 7 42 42 H 1.09001 * 109.49562 * 177.59547 * 23 8 7 43 43 H 1.09003 * 109.46406 * 305.86347 * 24 5 4 44 44 H 1.09004 * 109.46033 * 65.84009 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 0.9331 -1.1009 5 7 4.6245 0.9343 -1.1005 6 6 5.1501 1.5256 0.1366 7 6 6.6730 1.3785 0.1670 8 6 7.2735 2.0830 -1.0528 9 6 8.7910 1.8889 -1.0612 10 7 9.3767 2.5683 0.0971 11 6 10.7092 2.5328 0.2965 12 8 11.4233 1.9381 -0.4827 13 6 11.3116 3.2312 1.4884 14 16 13.1070 3.0017 1.4783 15 6 13.5377 3.8943 2.9351 16 1 12.7680 4.3721 3.5231 17 6 14.8663 3.9841 3.3266 18 7 15.1881 4.6513 4.4147 19 14 16.1976 3.1583 2.3093 20 1 16.6950 4.1072 1.2810 21 1 17.3194 2.7558 3.1952 22 1 15.6369 1.9555 1.6429 23 6 6.6735 1.4811 -2.3265 24 6 5.1505 1.6253 -2.2846 25 1 -1.0502 -0.0001 0.0004 26 1 3.0092 0.3479 0.9672 27 1 3.0098 -1.0104 -0.1831 28 1 2.7923 0.5859 -2.0681 29 1 2.7917 1.9442 -0.9178 30 1 4.8865 2.5826 0.1744 31 1 4.7184 1.0129 0.9962 32 1 6.9371 0.3212 0.1432 33 1 7.0642 1.8315 1.0780 34 1 7.0425 3.1473 -1.0090 35 1 9.0216 0.8247 -1.0131 36 1 9.2060 2.3096 -1.9772 37 1 8.8055 3.0436 0.7206 38 1 11.0806 4.2954 1.4408 39 1 10.8969 2.8100 2.4041 40 1 16.1166 4.7138 4.6884 41 1 6.9375 0.4255 -2.3896 42 1 7.0651 2.0074 -3.1969 43 1 4.7191 1.1850 -3.1836 44 1 4.8871 2.6819 -2.2354 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222425498.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:38 Heat of formation + Delta-G solvation = 2.304431 kcal Electronic energy + Delta-G solvation = -22212.921535 eV Core-core repulsion = 18871.198791 eV Total energy + Delta-G solvation = -3341.722743 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.97341 -38.99155 -36.33614 -34.56169 -32.92574 -32.43155 -31.27186 -30.35035 -29.22835 -26.54671 -25.58589 -23.96543 -23.17231 -21.72380 -20.53109 -19.95880 -18.51584 -17.87430 -16.63117 -16.21905 -16.02057 -15.86227 -15.35023 -15.08761 -14.95097 -14.62092 -14.36154 -14.04726 -13.96319 -13.62838 -13.28273 -13.02744 -12.80746 -12.70549 -12.68005 -12.40807 -12.01286 -11.74767 -11.55467 -11.26189 -11.04029 -11.00329 -10.87014 -10.82857 -10.58990 -10.54411 -10.35388 -9.84872 -9.49976 -9.00797 -8.92906 -8.77478 -8.49128 -6.90952 -6.28448 -4.00024 2.35823 2.43281 2.78588 3.00606 3.32236 3.35652 3.38080 3.51431 3.67957 4.07168 4.33530 4.34195 4.36402 4.48077 4.61616 4.71693 4.75351 4.88205 4.94529 5.01905 5.04732 5.10701 5.18049 5.21578 5.29851 5.39132 5.41347 5.48689 5.53567 5.54440 5.58397 5.65834 5.75768 5.78543 5.81903 5.89192 6.02195 6.10115 6.55556 6.62310 6.64864 7.20155 7.63402 7.94629 8.41998 8.51996 9.17857 10.80769 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.032846 B = 0.002006 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.259581 B =13955.599663 C =14544.548000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.185 4.185 3 C -0.012 4.012 4 C 0.062 3.938 5 N -0.539 5.539 6 C 0.051 3.949 7 C -0.113 4.113 8 C -0.100 4.100 9 C 0.127 3.873 10 N -0.736 5.736 11 C 0.530 3.470 12 O -0.520 6.520 13 C -0.124 4.124 14 S -0.142 6.142 15 C -0.522 4.522 16 H 0.088 0.912 17 C 0.096 3.904 18 N -0.881 5.881 19 Si 0.857 3.143 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.235 1.235 23 C -0.109 4.109 24 C 0.059 3.941 25 H 0.217 0.783 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.037 0.963 30 H 0.034 0.966 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.398 0.602 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.271 0.729 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.975 -6.742 -11.456 30.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.186 4.186 3 C -0.049 4.049 4 C -0.066 4.066 5 N -0.263 5.263 6 C -0.077 4.077 7 C -0.151 4.151 8 C -0.119 4.119 9 C 0.003 3.997 10 N -0.391 5.391 11 C 0.315 3.685 12 O -0.395 6.395 13 C -0.275 4.275 14 S 0.084 5.916 15 C -0.669 4.669 16 H 0.106 0.894 17 C -0.113 4.113 18 N -0.517 5.517 19 Si 0.682 3.318 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.159 1.159 23 C -0.147 4.147 24 C -0.069 4.069 25 H 0.233 0.767 26 H 0.106 0.894 27 H 0.115 0.885 28 H 0.097 0.903 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.232 0.768 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -26.458 -8.155 -12.666 30.446 hybrid contribution -0.939 1.634 1.097 2.181 sum -27.397 -6.521 -11.569 30.446 Atomic orbital electron populations 1.24936 0.96005 1.01038 1.00779 1.23082 0.94502 1.00437 1.00579 1.18727 0.84241 1.01947 0.99948 1.21987 0.87370 0.98001 0.99261 1.61892 1.06564 1.55195 1.02675 1.22190 0.95766 0.97328 0.92393 1.21673 0.93754 1.02039 0.97619 1.21454 0.94034 1.00399 0.96034 1.21310 0.91406 0.97896 0.89045 1.45982 1.07529 1.56833 1.28744 1.20268 0.81581 0.80095 0.86511 1.90696 1.60163 1.42404 1.46223 1.23281 1.02319 1.03334 0.98551 1.84791 0.97953 1.71868 1.36975 1.22325 0.97103 1.37888 1.09613 0.89407 1.24714 0.97959 0.94088 0.94544 1.69942 1.19037 1.39825 1.22911 0.86729 0.82074 0.82199 0.80823 1.19220 1.19943 1.15911 1.21558 0.93865 1.02366 0.96920 1.22063 0.95550 0.96389 0.92916 0.76653 0.89428 0.88541 0.90319 0.94481 0.94735 0.90312 0.90510 0.91139 0.90783 0.91424 0.91630 0.76793 0.88584 0.88501 0.91957 0.90460 0.90971 0.90518 0.94774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.41 19.25 29.55 0.57 -0.84 16 2 C -0.19 -1.40 13.34 -37.12 -0.50 -1.89 16 3 C -0.01 -0.07 5.63 -29.51 -0.17 -0.24 16 4 C 0.06 0.38 4.92 -3.83 -0.02 0.36 16 5 N -0.54 -3.65 4.66 -234.68 -1.09 -4.75 16 6 C 0.05 0.34 5.29 -3.84 -0.02 0.32 16 7 C -0.11 -0.82 5.23 -26.65 -0.14 -0.96 16 8 C -0.10 -0.76 2.29 -90.50 -0.21 -0.96 16 9 C 0.13 1.36 5.07 -4.05 -0.02 1.34 16 10 N -0.74 -9.08 5.31 -60.29 -0.32 -9.40 16 11 C 0.53 9.34 7.85 -10.98 -0.09 9.26 16 12 O -0.52 -11.27 15.86 5.57 0.09 -11.18 16 13 C -0.12 -2.39 6.16 36.01 0.22 -2.17 16 14 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 15 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 16 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 17 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 18 N -0.88 -26.59 13.97 55.49 0.78 -25.82 16 19 Si 0.86 21.85 27.74 -169.99 -4.71 17.13 16 20 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 23 C -0.11 -0.74 5.38 -26.65 -0.14 -0.88 16 24 C 0.06 0.37 5.46 -3.84 -0.02 0.35 16 25 H 0.22 0.74 7.80 -54.08 -0.42 0.32 16 26 H 0.09 0.50 6.43 -51.93 -0.33 0.16 16 27 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.48 7.99 -51.93 -0.41 0.06 16 29 H 0.04 0.24 8.12 -51.93 -0.42 -0.18 16 30 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.47 6.21 -51.93 -0.32 0.15 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.50 7.28 -51.92 -0.38 0.12 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.40 3.81 7.69 -40.82 -0.31 3.49 16 38 H 0.10 1.72 8.14 -51.92 -0.42 1.29 16 39 H 0.10 1.73 8.14 -51.92 -0.42 1.30 16 40 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.44 8.02 -51.93 -0.42 0.02 16 44 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 LS Contribution 373.87 15.07 5.63 5.63 Total: -1.00 -34.22 373.87 -9.19 -43.41 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -7.25 Total: -1.04 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -0.31 Total: -8.37 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: -0.64 Total: -39.97 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.13 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.22 -9.19 -43.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222425498.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.710 kcal (2) G-P(sol) polarization free energy of solvation -34.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds