Wall clock time and date at job start Tue Mar 31 2020 09:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00301 * 2 1 4 4 H 1.48498 * 109.47564 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47172 * 300.00738 * 3 2 1 6 6 H 1.48500 * 109.46839 * 60.00322 * 3 2 1 7 7 C 1.37877 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99886 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00385 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.49905 * 60.05854 * 9 7 2 11 11 C 1.53037 * 109.50124 * 180.16263 * 9 7 2 12 12 C 1.53044 * 109.53628 * 181.31228 * 11 9 7 13 13 C 1.53620 * 109.24542 * 298.51228 * 12 11 9 14 14 N 1.46926 * 108.54278 * 54.85433 * 13 12 11 15 15 C 1.34778 * 120.62798 * 126.37232 * 14 13 12 16 16 O 1.21593 * 119.99776 * 184.94140 * 15 14 13 17 17 N 1.34777 * 120.00259 * 4.93608 * 15 14 13 18 18 C 1.46502 * 120.00011 * 175.01424 * 17 15 14 19 19 H 1.09006 * 110.01636 * 326.39218 * 18 17 15 20 20 C 1.53873 * 110.07320 * 87.81150 * 18 17 15 21 21 C 1.54269 * 106.59674 * 119.30601 * 20 18 17 22 22 C 1.54893 * 104.19542 * 23.60878 * 21 20 18 23 23 H 1.09007 * 110.75508 * 80.37186 * 22 21 20 24 24 C 1.50701 * 110.75577 * 203.73976 * 22 21 20 25 25 O 1.20826 * 119.99424 * 113.33190 * 24 22 21 26 26 O 1.34221 * 120.00383 * 293.33082 * 24 22 21 27 27 C 1.54263 * 110.03079 * 205.00657 * 18 17 15 28 28 C 1.46924 * 118.74288 * 306.09525 * 14 13 12 29 29 H 0.96996 * 119.99880 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.45900 * 301.33518 * 11 9 7 31 31 H 1.08998 * 109.45944 * 61.30111 * 11 9 7 32 32 H 1.09005 * 109.49616 * 58.58641 * 12 11 9 33 33 H 1.09000 * 109.49400 * 178.64895 * 12 11 9 34 34 H 1.08997 * 109.74178 * 295.12055 * 13 12 11 35 35 H 1.09006 * 109.66626 * 174.54952 * 13 12 11 36 36 H 0.97000 * 119.99925 * 355.02127 * 17 15 14 37 37 H 1.09000 * 110.03445 * 238.59038 * 20 18 17 38 38 H 1.08998 * 110.02921 * 0.02574 * 20 18 17 39 39 H 1.08997 * 110.48844 * 264.93523 * 21 20 18 40 40 H 1.08992 * 110.48731 * 142.28947 * 21 20 18 41 41 H 0.96701 * 117.00369 * 180.02562 * 26 24 22 42 42 H 1.09000 * 110.49097 * 98.37746 * 27 18 17 43 43 H 1.09004 * 110.48934 * 335.73283 * 27 18 17 44 44 H 1.08990 * 109.59147 * 173.64550 * 28 14 13 45 45 H 1.09000 * 109.58889 * 294.07667 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6247 -2.5577 -0.8906 11 6 2.2450 -3.6628 0.0029 12 6 1.4811 -4.9886 -0.0301 13 6 0.6037 -5.0988 1.2261 14 7 -0.2555 -3.9094 1.3018 15 6 -1.5921 -4.0344 1.4218 16 8 -2.3000 -3.0462 1.3931 17 7 -2.1439 -5.2546 1.5735 18 6 -3.5835 -5.3828 1.8132 19 1 -3.9402 -4.5382 2.4029 20 6 -4.3383 -5.4467 0.4738 21 6 -5.0679 -6.8056 0.4436 22 6 -5.2179 -7.1895 1.9368 23 1 -6.0615 -6.6664 2.3872 24 6 -5.3676 -8.6809 2.0924 25 8 -4.5009 -9.3212 2.6389 26 8 -6.4636 -9.2980 1.6238 27 6 -3.8808 -6.7049 2.5502 28 6 0.3705 -2.5812 1.2505 29 1 -0.4850 0.8400 0.0004 30 1 2.8890 -3.5929 -0.8736 31 1 2.8543 -3.6173 0.9056 32 1 0.8526 -5.0242 -0.9200 33 1 2.1898 -5.8164 -0.0519 34 1 1.2353 -5.1503 2.1129 35 1 -0.0156 -5.9937 1.1636 36 1 -1.5880 -6.0479 1.5240 37 1 -5.0614 -4.6333 0.4134 38 1 -3.6336 -5.3829 -0.3553 39 1 -4.4690 -7.5487 -0.0828 40 1 -6.0470 -6.7026 -0.0240 41 1 -6.5149 -10.2557 1.7473 42 1 -3.9936 -6.5284 3.6199 43 1 -3.0901 -7.4317 2.3639 44 1 -0.4026 -1.8143 1.2040 45 1 0.9836 -2.4315 2.1392 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:58 Heat of formation + Delta-G solvation = -130.581272 kcal Electronic energy + Delta-G solvation = -26422.796043 eV Core-core repulsion = 22632.558072 eV Total energy + Delta-G solvation = -3790.237971 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.83388 -39.78576 -38.03547 -36.58758 -36.30572 -33.74489 -32.93840 -31.65209 -29.73250 -29.27452 -28.13206 -25.03723 -24.38143 -23.39819 -21.80204 -20.92320 -20.38045 -19.80912 -18.75079 -18.40016 -17.48265 -17.20068 -16.36267 -16.08668 -15.76725 -15.21126 -14.64206 -14.47612 -14.23630 -13.69592 -13.61447 -13.53322 -13.43695 -12.80274 -12.59745 -12.36111 -12.31315 -12.00053 -11.89217 -11.87124 -11.61436 -11.49572 -11.15775 -10.98309 -10.90843 -10.78463 -10.61551 -10.46701 -10.35977 -10.20107 -9.84556 -9.39400 -9.06680 -8.90606 -8.73393 -8.38934 -7.60432 -5.95118 -4.04183 1.87476 2.66381 3.26196 3.33628 3.40790 3.43766 3.83829 4.13956 4.28947 4.43676 4.51214 4.63436 5.03221 5.08558 5.21653 5.24992 5.28178 5.30325 5.34537 5.41292 5.51990 5.61156 5.65010 5.81319 5.93058 5.99088 6.11067 6.14725 6.19126 6.21865 6.34105 6.61840 6.70121 6.83597 6.90630 7.02413 7.08136 7.38751 7.54269 7.56236 7.78539 7.96761 8.10228 8.44656 8.62715 8.99669 9.29681 9.61216 11.09715 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.027032 B = 0.002948 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.572157 B = 9496.747854 C =10128.195721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.039 3.961 10 H 0.028 0.972 11 C -0.110 4.110 12 C -0.133 4.133 13 C 0.115 3.885 14 N -0.623 5.623 15 C 0.700 3.300 16 O -0.581 6.581 17 N -0.752 5.752 18 C 0.163 3.837 19 H 0.094 0.906 20 C -0.136 4.136 21 C -0.108 4.108 22 C -0.088 4.088 23 H 0.119 0.881 24 C 0.488 3.512 25 O -0.515 6.515 26 O -0.516 6.516 27 C -0.114 4.114 28 C 0.129 3.871 29 H 0.262 0.738 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.390 0.610 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.409 0.591 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.123 0.877 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.136 -18.173 3.342 21.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.076 0.924 9 C 0.020 3.980 10 H 0.046 0.954 11 C -0.148 4.148 12 C -0.171 4.171 13 C -0.009 4.009 14 N -0.359 5.359 15 C 0.401 3.599 16 O -0.458 6.458 17 N -0.411 5.411 18 C 0.057 3.943 19 H 0.112 0.888 20 C -0.175 4.175 21 C -0.146 4.146 22 C -0.108 4.108 23 H 0.137 0.863 24 C 0.330 3.670 25 O -0.403 6.403 26 O -0.327 6.327 27 C -0.152 4.152 28 C 0.008 3.992 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.226 0.774 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.267 0.733 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.141 0.859 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.526 -17.012 3.440 20.299 hybrid contribution 0.724 -0.274 0.054 0.776 sum -9.802 -17.287 3.494 20.177 Atomic orbital electron populations 1.69912 1.05656 1.26621 1.49329 1.25060 0.94879 0.99205 0.94933 0.86558 0.80042 0.83934 0.77596 1.19842 1.21061 1.20997 1.21115 0.92893 0.90156 1.51761 0.92388 1.18984 0.92602 0.92149 0.94260 0.95351 1.21614 0.98543 0.94117 1.00482 1.22016 0.98578 0.99085 0.97433 1.21578 0.93351 0.87515 0.98467 1.47789 1.03524 1.08839 1.75780 1.15978 0.82589 0.83187 0.78142 1.90929 1.60394 1.36632 1.57836 1.45508 1.08281 1.07446 1.79841 1.21281 0.80417 0.97326 0.95292 0.88757 1.22654 0.99869 0.96229 0.98752 1.22348 1.01721 0.98019 0.92517 1.22000 1.01235 0.87389 1.00134 0.86341 1.23403 0.78341 0.91511 0.73748 1.90729 1.41639 1.67566 1.40320 1.84553 1.43710 1.28865 1.75610 1.22599 0.95449 0.96862 1.00340 1.22172 0.98330 0.80602 0.98073 0.92760 0.93116 0.93224 0.92213 0.92416 0.92155 0.92158 0.77356 0.90418 0.90378 0.91166 0.90148 0.73274 0.89975 0.89559 0.85878 0.94346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.77 11.39 55.43 0.63 -25.14 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.52 -14.17 8.56 -34.44 -0.29 -14.47 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.04 0.98 2.25 -91.65 -0.21 0.77 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.19 5.10 -26.69 -0.14 -2.33 16 12 C -0.13 -2.14 6.10 -26.39 -0.16 -2.30 16 13 C 0.12 1.79 6.42 -3.49 -0.02 1.76 16 14 N -0.62 -12.54 2.97 -178.23 -0.53 -13.07 16 15 C 0.70 14.09 8.29 -86.92 -0.72 13.37 16 16 O -0.58 -14.34 15.47 5.28 0.08 -14.25 16 17 N -0.75 -10.97 4.89 -57.58 -0.28 -11.25 16 18 C 0.16 2.01 3.21 -66.81 -0.21 1.79 16 19 H 0.09 1.32 7.64 -51.93 -0.40 0.92 16 20 C -0.14 -1.54 6.59 -25.61 -0.17 -1.71 16 21 C -0.11 -0.91 6.26 -25.07 -0.16 -1.06 16 22 C -0.09 -0.72 3.40 -89.78 -0.31 -1.02 16 23 H 0.12 0.77 8.14 -51.92 -0.42 0.35 16 24 C 0.49 4.36 7.63 36.01 0.27 4.63 16 25 O -0.51 -6.16 16.48 -18.75 -0.31 -6.47 16 26 O -0.52 -3.40 13.42 -39.23 -0.53 -3.93 16 27 C -0.11 -1.10 5.60 -25.07 -0.14 -1.24 16 28 C 0.13 3.15 5.41 -3.71 -0.02 3.13 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.74 5.64 -51.93 -0.29 0.45 16 36 H 0.39 4.78 5.84 -40.82 -0.24 4.54 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 1.03 7.92 -51.93 -0.41 0.62 16 39 H 0.07 0.60 8.04 -51.93 -0.42 0.18 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.41 1.05 9.10 45.56 0.41 1.47 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.09 0.88 7.04 -51.93 -0.37 0.51 16 44 H 0.12 3.53 5.11 -51.93 -0.27 3.27 16 45 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 357.56 15.07 5.39 5.39 Total: -1.00 -34.33 357.56 -9.10 -43.43 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -6.16 Total: 6.01 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -2.37 Total: 2.96 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: -0.18 Total: -49.47 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.75 Total: -24.65 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.33 -9.10 -43.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.152 kcal (2) G-P(sol) polarization free energy of solvation -34.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds