Wall clock time and date at job start Tue Mar 31 2020 09:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 O 1.45206 * 109.46989 * 119.99587 * 2 1 3 6 6 C 1.34639 * 116.99892 * 59.99951 * 5 2 1 7 7 O 1.21513 * 119.99857 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99616 * 179.97438 * 6 5 2 9 9 C 1.47159 * 120.71326 * 359.72613 * 8 6 5 10 10 C 1.54320 * 107.80380 * 132.67850 * 9 8 6 11 11 H 1.09003 * 112.53151 * 182.37892 * 10 9 8 12 12 C 1.54544 * 107.98641 * 306.73873 * 10 9 8 13 13 C 1.55860 * 104.99763 * 89.00698 * 12 10 9 14 14 C 1.54544 * 104.09397 * 0.02562 * 13 12 10 15 15 H 1.09006 * 112.17850 * 146.80982 * 14 13 12 16 16 C 1.47165 * 120.70799 * 179.97438 * 8 6 5 17 17 N 1.48304 * 107.10182 * 58.61961 * 10 9 8 18 18 C 1.34783 * 128.07574 * 106.57394 * 17 10 9 19 19 O 1.21686 * 119.99716 * 180.02562 * 18 17 10 20 20 C 1.46368 * 119.99979 * 359.97438 * 18 17 10 21 21 H 1.07995 * 120.00215 * 359.97438 * 20 18 17 22 22 C 1.40054 * 119.99994 * 180.02562 * 20 18 17 23 23 N 1.30671 * 119.99763 * 359.97438 * 22 20 18 24 24 Si 1.86798 * 120.00118 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47202 * 59.99821 * 24 22 20 26 26 H 1.48503 * 109.47110 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47231 * 299.99833 * 24 22 20 28 28 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 29 29 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 30 30 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 33 33 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 34 34 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 35 35 H 1.09002 * 109.47153 * 60.00008 * 4 2 1 36 36 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 37 37 H 1.08997 * 109.74880 * 252.38654 * 9 8 6 38 38 H 1.08999 * 109.75117 * 13.11913 * 9 8 6 39 39 H 1.09003 * 110.36292 * 207.85776 * 12 10 9 40 40 H 1.09000 * 110.36654 * 330.06482 * 12 10 9 41 41 H 1.08997 * 110.90063 * 241.33490 * 13 12 10 42 42 H 1.09002 * 110.55076 * 118.52421 * 13 12 10 43 43 H 1.09005 * 109.74980 * 346.88755 * 16 8 6 44 44 H 1.09002 * 109.74959 * 107.56308 * 16 8 6 45 45 H 0.97008 * 119.99900 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1857 6 6 1.6521 -1.9723 1.3385 7 8 0.9508 -2.5094 0.5042 8 7 2.0680 -2.6655 2.4169 9 6 2.9227 -2.0323 3.4338 10 6 2.3313 -2.3637 4.8201 11 1 2.8852 -1.8949 5.6334 12 6 0.8419 -1.9512 4.8146 13 6 0.0772 -3.2076 4.2990 14 6 1.1910 -4.2492 4.0478 15 1 0.8550 -5.2669 4.2466 16 6 1.6814 -4.0736 2.5999 17 7 2.3031 -3.8417 4.9401 18 6 3.1017 -4.6304 5.6863 19 8 2.9478 -5.8374 5.6740 20 6 4.1547 -4.0351 6.5104 21 1 4.2920 -2.9640 6.5203 22 6 4.9848 -4.8548 7.2854 23 7 4.8189 -6.1508 7.2730 24 14 6.3292 -4.0952 8.3366 25 1 5.7211 -3.1660 9.3225 26 1 7.0616 -5.1687 9.0553 27 1 7.2733 -3.3470 7.4683 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6766 -1.7490 -1.2491 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2489 37 1 3.9367 -2.4249 3.3590 38 1 2.9333 -0.9525 3.2855 39 1 0.5151 -1.6969 5.8229 40 1 0.6843 -1.1083 4.1417 41 1 -0.4523 -2.9873 3.3722 42 1 -0.6173 -3.5704 5.0567 43 1 0.8803 -4.3289 1.9061 44 1 2.5422 -4.7181 2.4214 45 1 5.3942 -6.7186 7.8095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856467458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:58:12 Heat of formation + Delta-G solvation = -102.407165 kcal Electronic energy + Delta-G solvation = -27678.987570 eV Core-core repulsion = 23889.971320 eV Total energy + Delta-G solvation = -3789.016250 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.93226 -39.56302 -36.99159 -36.05507 -34.34004 -33.34779 -32.56328 -31.24385 -30.23482 -27.51963 -27.45847 -26.76264 -25.95184 -24.43375 -22.38007 -21.17727 -20.31484 -19.56225 -18.44810 -17.81902 -16.56828 -16.48202 -16.08848 -15.65379 -15.11196 -14.92279 -14.29601 -14.21188 -14.15587 -13.76697 -13.63817 -13.36019 -12.68294 -12.64400 -12.59790 -12.30643 -12.23591 -12.09505 -11.97649 -11.92463 -11.63416 -11.45775 -11.41003 -11.31666 -10.99914 -10.92331 -10.71702 -10.59748 -10.36215 -10.30283 -10.12234 -10.11279 -9.84196 -8.92835 -8.64282 -7.72040 -7.31287 -6.26413 -4.71786 2.29187 3.02217 3.11592 3.16964 3.18341 3.94478 4.01702 4.37485 4.47043 4.63296 4.67178 4.81398 5.03530 5.09809 5.20519 5.29389 5.33668 5.41587 5.41896 5.50996 5.56691 5.63175 5.69316 5.74181 5.76447 5.81882 5.85959 6.01540 6.03422 6.12015 6.18881 6.19513 6.20944 6.22628 6.27640 6.45051 6.53748 6.56320 6.74257 7.17084 7.37130 7.61933 8.01661 8.33601 8.51957 8.95037 9.42759 10.49954 10.68720 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.021810 B = 0.003893 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.509069 B = 7190.325044 C = 7689.400808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.363 6.363 6 C 0.652 3.348 7 O -0.579 6.579 8 N -0.581 5.581 9 C 0.102 3.898 10 C 0.128 3.872 11 H 0.108 0.892 12 C -0.125 4.125 13 C -0.124 4.124 14 C 0.121 3.879 15 H 0.103 0.897 16 C 0.122 3.878 17 N -0.636 5.636 18 C 0.577 3.423 19 O -0.573 6.573 20 C -0.538 4.538 21 H 0.069 0.931 22 C 0.088 3.912 23 N -0.767 5.767 24 Si 0.908 3.092 25 H -0.267 1.267 26 H -0.280 1.280 27 H -0.267 1.267 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.092 0.908 44 H 0.072 0.928 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.880 14.388 -11.121 19.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.278 6.278 6 C 0.407 3.593 7 O -0.470 6.470 8 N -0.321 5.321 9 C -0.021 4.021 10 C 0.022 3.978 11 H 0.126 0.874 12 C -0.163 4.163 13 C -0.163 4.163 14 C 0.015 3.985 15 H 0.121 0.879 16 C 0.000 4.000 17 N -0.374 5.374 18 C 0.385 3.615 19 O -0.455 6.455 20 C -0.575 4.575 21 H 0.087 0.913 22 C -0.132 4.132 23 N -0.395 5.395 24 Si 0.733 3.267 25 H -0.192 1.192 26 H -0.205 1.205 27 H -0.192 1.192 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.110 0.890 44 H 0.090 0.910 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.020 13.313 -11.265 18.450 hybrid contribution 0.706 0.496 0.427 0.963 sum -5.314 13.809 -10.838 18.341 Atomic orbital electron populations 1.22503 0.94185 1.05074 1.02149 1.21991 0.94244 0.91449 0.82455 1.21845 1.02239 0.92734 1.02893 1.22506 1.01507 1.03585 0.96391 1.86303 1.71602 1.23953 1.45907 1.17944 0.78926 0.80336 0.82103 1.90848 1.42196 1.70516 1.43438 1.46990 1.51976 1.12255 1.20846 1.22475 0.94054 0.97711 0.87900 1.22346 0.95288 0.84809 0.95370 0.87393 1.22752 0.95393 0.97319 1.00857 1.22736 0.97302 0.95633 1.00597 1.22191 0.88451 0.99343 0.88494 0.87903 1.22276 1.01028 0.78682 0.98039 1.49542 1.34901 1.04794 1.48189 1.18044 0.80301 0.85152 0.78039 1.90626 1.72592 1.14247 1.68052 1.20793 1.15584 0.93979 1.27108 0.91290 1.25716 0.97284 0.94442 0.95806 1.70003 1.33381 1.04081 1.32050 0.86423 0.80855 0.79315 0.80146 1.19222 1.20532 1.19210 0.92272 0.91496 0.89309 0.91517 0.90423 0.91498 0.89324 0.91466 0.92284 0.90709 0.89365 0.91519 0.91791 0.91546 0.91623 0.88995 0.91006 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 8.37 37.16 0.31 -1.64 16 2 C 0.14 1.52 1.13 -90.62 -0.10 1.42 16 3 C -0.14 -1.17 8.85 37.16 0.33 -0.84 16 4 C -0.18 -2.02 8.37 37.16 0.31 -1.71 16 5 O -0.36 -5.05 8.58 -40.32 -0.35 -5.40 16 6 C 0.65 10.32 7.74 54.05 0.42 10.74 16 7 O -0.58 -9.93 11.35 -19.28 -0.22 -10.15 16 8 N -0.58 -9.38 2.25 -177.05 -0.40 -9.77 16 9 C 0.10 1.60 5.96 -2.99 -0.02 1.58 16 10 C 0.13 2.20 3.95 -65.43 -0.26 1.95 16 11 H 0.11 1.85 6.72 -51.93 -0.35 1.50 16 12 C -0.12 -1.84 6.22 -24.39 -0.15 -2.00 16 13 C -0.12 -1.92 6.31 -24.39 -0.15 -2.07 16 14 C 0.12 2.24 4.08 -65.68 -0.27 1.98 16 15 H 0.10 2.05 7.92 -51.93 -0.41 1.64 16 16 C 0.12 2.09 5.88 -3.22 -0.02 2.08 16 17 N -0.64 -13.73 2.74 -154.43 -0.42 -14.16 16 18 C 0.58 15.84 7.85 -12.99 -0.10 15.74 16 19 O -0.57 -18.11 15.33 5.20 0.08 -18.03 16 20 C -0.54 -14.51 9.10 -35.63 -0.32 -14.84 16 21 H 0.07 1.68 6.49 -52.49 -0.34 1.34 16 22 C 0.09 2.36 5.50 -17.36 -0.10 2.27 16 23 N -0.77 -22.41 11.83 55.55 0.66 -21.75 16 24 Si 0.91 19.50 29.56 -169.99 -5.02 14.47 16 25 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 26 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 27 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 1.18 5.88 -51.93 -0.31 0.87 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 1.21 5.88 -51.93 -0.31 0.90 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.09 1.19 7.04 -51.93 -0.37 0.82 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 0.86 7.85 -51.93 -0.41 0.46 16 41 H 0.07 0.97 7.84 -51.93 -0.41 0.57 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.09 1.49 7.11 -51.93 -0.37 1.12 16 44 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 45 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 LS Contribution 352.87 15.07 5.32 5.32 Total: -1.00 -33.19 352.87 -7.53 -40.71 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -7.05 Total: 4.11 kcal Atomic # 6 Polarization: 14.77 SS G_CDS: -0.12 Total: 14.65 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: -0.16 Total: -45.68 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -0.49 Total: -33.57 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.19 -7.53 -40.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856467458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.694 kcal (2) G-P(sol) polarization free energy of solvation -33.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds