Wall clock time and date at job start Tue Mar 31 2020 09:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 O 1.45206 * 109.46989 * 119.99587 * 2 1 3 6 6 C 1.34639 * 116.99892 * 59.99951 * 5 2 1 7 7 O 1.21513 * 119.99857 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99616 * 179.97438 * 6 5 2 9 9 C 1.47159 * 120.71326 * 359.72613 * 8 6 5 10 10 C 1.54320 * 107.80380 * 132.67850 * 9 8 6 11 11 H 1.09003 * 112.53151 * 182.37892 * 10 9 8 12 12 C 1.54544 * 107.98641 * 306.73873 * 10 9 8 13 13 C 1.55860 * 104.99763 * 89.00698 * 12 10 9 14 14 C 1.54544 * 104.09397 * 0.02562 * 13 12 10 15 15 H 1.09006 * 112.17850 * 146.80982 * 14 13 12 16 16 C 1.47165 * 120.70799 * 179.97438 * 8 6 5 17 17 N 1.48304 * 107.10182 * 58.61961 * 10 9 8 18 18 C 1.34783 * 128.07574 * 106.57394 * 17 10 9 19 19 O 1.21686 * 119.99716 * 180.02562 * 18 17 10 20 20 C 1.46368 * 119.99979 * 359.97438 * 18 17 10 21 21 H 1.07995 * 120.00215 * 359.97438 * 20 18 17 22 22 C 1.40054 * 119.99994 * 180.02562 * 20 18 17 23 23 N 1.30671 * 119.99763 * 359.97438 * 22 20 18 24 24 Si 1.86798 * 120.00118 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47202 * 59.99821 * 24 22 20 26 26 H 1.48503 * 109.47110 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47231 * 299.99833 * 24 22 20 28 28 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 29 29 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 30 30 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 33 33 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 34 34 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 35 35 H 1.09002 * 109.47153 * 60.00008 * 4 2 1 36 36 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 37 37 H 1.08997 * 109.74880 * 252.38654 * 9 8 6 38 38 H 1.08999 * 109.75117 * 13.11913 * 9 8 6 39 39 H 1.09003 * 110.36292 * 207.85776 * 12 10 9 40 40 H 1.09000 * 110.36654 * 330.06482 * 12 10 9 41 41 H 1.08997 * 110.90063 * 241.33490 * 13 12 10 42 42 H 1.09002 * 110.55076 * 118.52421 * 13 12 10 43 43 H 1.09005 * 109.74980 * 346.88755 * 16 8 6 44 44 H 1.09002 * 109.74959 * 107.56308 * 16 8 6 45 45 H 0.97008 * 119.99900 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1857 6 6 1.6521 -1.9723 1.3385 7 8 0.9508 -2.5094 0.5042 8 7 2.0680 -2.6655 2.4169 9 6 2.9227 -2.0323 3.4338 10 6 2.3313 -2.3637 4.8201 11 1 2.8852 -1.8949 5.6334 12 6 0.8419 -1.9512 4.8146 13 6 0.0772 -3.2076 4.2990 14 6 1.1910 -4.2492 4.0478 15 1 0.8550 -5.2669 4.2466 16 6 1.6814 -4.0736 2.5999 17 7 2.3031 -3.8417 4.9401 18 6 3.1017 -4.6304 5.6863 19 8 2.9478 -5.8374 5.6740 20 6 4.1547 -4.0351 6.5104 21 1 4.2920 -2.9640 6.5203 22 6 4.9848 -4.8548 7.2854 23 7 4.8189 -6.1508 7.2730 24 14 6.3292 -4.0952 8.3366 25 1 5.7211 -3.1660 9.3225 26 1 7.0616 -5.1687 9.0553 27 1 7.2733 -3.3470 7.4683 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6766 -1.7490 -1.2491 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2489 37 1 3.9367 -2.4249 3.3590 38 1 2.9333 -0.9525 3.2855 39 1 0.5151 -1.6969 5.8229 40 1 0.6843 -1.1083 4.1417 41 1 -0.4523 -2.9873 3.3722 42 1 -0.6173 -3.5704 5.0567 43 1 0.8803 -4.3289 1.9061 44 1 2.5422 -4.7181 2.4214 45 1 5.3942 -6.7186 7.8095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000856467458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:58:11 Heat of formation + Delta-G solvation = -123.249950 kcal Electronic energy + Delta-G solvation = -27679.891381 eV Core-core repulsion = 23889.971320 eV Total energy + Delta-G solvation = -3789.920061 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.20282 -40.90156 -38.51180 -37.69829 -35.56125 -34.65426 -34.47419 -32.68764 -31.85423 -28.53396 -28.30243 -28.22398 -27.58693 -25.79143 -23.74893 -22.69133 -21.71731 -20.76618 -19.92935 -19.28574 -18.06998 -17.66168 -17.51348 -17.43033 -16.42978 -16.16318 -15.89443 -15.52092 -15.33047 -15.14820 -15.07525 -14.45806 -14.33031 -14.01373 -13.75181 -13.70006 -13.36025 -13.25588 -13.16770 -13.00892 -12.86883 -12.79684 -12.70192 -12.62009 -12.41233 -12.29873 -12.20804 -12.01703 -11.91886 -11.77570 -11.40924 -11.32674 -11.01653 -10.91122 -10.08469 -9.86351 -9.05723 -8.28703 -6.83400 1.10937 1.41603 1.44562 1.56153 1.77491 2.23208 2.46241 2.71177 2.81830 3.53860 3.64201 3.73854 3.81829 3.86848 3.90794 4.01585 4.07385 4.16248 4.30171 4.46070 4.52546 4.57748 4.65693 4.67676 4.74416 4.76637 4.79259 4.82825 4.89078 4.93531 4.94426 4.95288 5.13521 5.17491 5.23370 5.34047 5.34861 5.35947 5.43457 5.51138 5.60514 6.02267 6.33235 6.43604 6.88209 7.28848 7.51238 8.46385 8.67648 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.021810 B = 0.003893 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.509069 B = 7190.325044 C = 7689.400808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.123 3.877 3 C -0.134 4.134 4 C -0.180 4.180 5 O -0.363 6.363 6 C 0.655 3.345 7 O -0.593 6.593 8 N -0.583 5.583 9 C 0.111 3.889 10 C 0.122 3.878 11 H 0.110 0.890 12 C -0.113 4.113 13 C -0.113 4.113 14 C 0.114 3.886 15 H 0.078 0.922 16 C 0.134 3.866 17 N -0.643 5.643 18 C 0.562 3.438 19 O -0.632 6.632 20 C -0.560 4.560 21 H 0.091 0.909 22 C 0.030 3.970 23 N -0.823 5.823 24 Si 0.995 3.005 25 H -0.252 1.252 26 H -0.278 1.278 27 H -0.253 1.253 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.092 0.908 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.120 0.880 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.102 0.898 44 H 0.046 0.954 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.854 18.405 -11.533 22.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.087 3.913 3 C -0.191 4.191 4 C -0.237 4.237 5 O -0.277 6.277 6 C 0.411 3.589 7 O -0.485 6.485 8 N -0.323 5.323 9 C -0.013 4.013 10 C 0.017 3.983 11 H 0.128 0.872 12 C -0.151 4.151 13 C -0.151 4.151 14 C 0.009 3.991 15 H 0.096 0.904 16 C 0.011 3.989 17 N -0.379 5.379 18 C 0.369 3.631 19 O -0.519 6.519 20 C -0.596 4.596 21 H 0.109 0.891 22 C -0.186 4.186 23 N -0.452 5.452 24 Si 0.814 3.186 25 H -0.176 1.176 26 H -0.203 1.203 27 H -0.177 1.177 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.121 0.879 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.138 0.862 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.120 0.880 44 H 0.064 0.936 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.029 17.415 -11.723 21.842 hybrid contribution 0.621 -0.720 0.411 1.036 sum -5.408 16.696 -11.313 20.880 Atomic orbital electron populations 1.22454 0.93745 1.03635 1.03645 1.22437 0.94796 0.92698 0.81365 1.21873 1.02307 0.90508 1.04432 1.22475 1.01402 1.02177 0.97688 1.86313 1.71526 1.22579 1.47316 1.17933 0.78503 0.80968 0.81486 1.90859 1.42747 1.71094 1.43771 1.46918 1.52247 1.11711 1.21434 1.22414 0.92820 0.99245 0.86781 1.22634 0.97459 0.81798 0.96375 0.87170 1.22702 0.92978 0.97351 1.02108 1.22662 0.96158 0.94820 1.01484 1.22326 0.88842 0.99287 0.88695 0.90427 1.21974 1.00220 0.79437 0.97242 1.49257 1.34548 1.06843 1.47277 1.18369 0.81166 0.84888 0.78653 1.90570 1.74370 1.16795 1.70151 1.21312 1.15786 0.95230 1.27290 0.89068 1.26970 0.99956 0.94668 0.96956 1.70192 1.35156 1.06304 1.33596 0.85106 0.76987 0.78390 0.78081 1.17591 1.20313 1.17708 0.91707 0.89115 0.92100 0.91458 0.87937 0.90914 0.92269 0.88927 0.92397 0.92515 0.86235 0.90467 0.89409 0.90123 0.91234 0.87963 0.93576 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.32 8.37 71.98 0.60 -2.72 16 2 C 0.12 2.42 1.13 -10.80 -0.01 2.40 16 3 C -0.13 -1.71 8.85 71.98 0.64 -1.08 16 4 C -0.18 -3.63 8.37 71.98 0.60 -3.03 16 5 O -0.36 -9.20 8.58 -55.49 -0.48 -9.67 16 6 C 0.66 19.82 7.74 129.79 1.00 20.82 16 7 O -0.59 -19.90 11.35 19.80 0.22 -19.67 16 8 N -0.58 -18.35 2.25 -944.48 -2.12 -20.47 16 9 C 0.11 3.31 5.96 86.70 0.52 3.83 16 10 C 0.12 4.05 3.95 45.62 0.18 4.23 16 11 H 0.11 3.60 6.72 -2.39 -0.02 3.58 16 12 C -0.11 -3.06 6.22 32.11 0.20 -2.86 16 13 C -0.11 -3.35 6.31 32.11 0.20 -3.15 16 14 C 0.11 4.34 4.08 45.47 0.19 4.53 16 15 H 0.08 3.32 7.92 -2.38 -0.02 3.30 16 16 C 0.13 4.73 5.88 86.55 0.51 5.24 16 17 N -0.64 -28.44 2.74 -760.72 -2.09 -30.53 16 18 C 0.56 32.15 7.85 86.36 0.68 32.82 16 19 O -0.63 -42.40 15.33 -4.30 -0.07 -42.47 16 20 C -0.56 -30.70 9.10 24.83 0.23 -30.47 16 21 H 0.09 4.40 6.49 -2.91 -0.02 4.38 16 22 C 0.03 1.61 5.50 85.31 0.47 2.08 16 23 N -0.82 -50.00 11.83 21.84 0.26 -49.75 16 24 Si 1.00 39.90 29.56 68.60 2.03 41.92 16 25 H -0.25 -9.41 7.11 99.48 0.71 -8.71 16 26 H -0.28 -10.93 7.11 99.48 0.71 -10.23 16 27 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 1.51 5.88 -2.39 -0.01 1.50 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.06 1.57 5.88 -2.39 -0.01 1.55 16 35 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.12 2.85 7.04 -2.39 -0.02 2.83 16 39 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.09 2.01 7.85 -2.39 -0.02 2.00 16 41 H 0.08 2.20 7.84 -2.39 -0.02 2.18 16 42 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.10 3.37 7.11 -2.38 -0.02 3.35 16 44 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.27 15.15 8.29 -92.70 -0.77 14.38 16 Total: -1.00 -76.42 352.87 4.75 -71.68 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: 0.99 Total: 26.30 kcal Atomic # 6 Polarization: 26.66 SS G_CDS: 6.00 Total: 32.66 kcal Atomic # 7 Polarization: -96.79 SS G_CDS: -3.95 Total: -100.74 kcal Atomic # 8 Polarization: -71.49 SS G_CDS: -0.32 Total: -71.81 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.92 kcal Total: -76.42 4.75 -71.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856467458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.573 kcal (2) G-P(sol) polarization free energy of solvation -76.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds