Wall clock time and date at job start Tue Mar 31 2020 09:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47086 * 2 1 4 4 C 1.50696 * 109.47435 * 120.00027 * 2 1 3 5 5 C 1.38260 * 119.99930 * 300.21375 * 4 2 1 6 6 C 1.38208 * 119.99691 * 180.23134 * 5 4 2 7 7 C 1.38258 * 120.00249 * 359.80572 * 6 5 4 8 8 C 1.38209 * 120.00183 * 359.97438 * 7 6 5 9 9 C 1.38209 * 120.00139 * 119.99877 * 4 2 1 10 10 C 1.50701 * 119.99980 * 0.02562 * 9 4 2 11 11 O 1.42903 * 109.47371 * 179.72511 * 10 9 4 12 12 C 1.42899 * 114.00114 * 180.02562 * 11 10 9 13 13 H 1.08996 * 109.46942 * 29.99649 * 12 11 10 14 14 C 1.50701 * 109.46981 * 270.00216 * 12 11 10 15 15 H 1.07998 * 120.00525 * 125.46959 * 14 12 11 16 16 C 1.37880 * 119.99580 * 305.46867 * 14 12 11 17 17 N 1.31510 * 120.00248 * 8.50205 * 16 14 12 18 18 Si 1.86804 * 119.99995 * 188.50675 * 16 14 12 19 19 H 1.48503 * 109.46865 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47378 * 119.99653 * 18 16 14 21 21 H 1.48497 * 109.47220 * 240.00225 * 18 16 14 22 22 C 1.50698 * 109.47245 * 150.00264 * 12 11 10 23 23 C 1.38233 * 119.99747 * 209.15784 * 22 12 11 24 24 C 1.38232 * 119.99978 * 179.78446 * 23 22 12 25 25 C 1.38236 * 119.99833 * 0.44306 * 24 23 22 26 26 C 1.38237 * 119.99902 * 359.80515 * 25 24 23 27 27 C 1.38230 * 120.00174 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.47504 * 300.00051 * 1 2 3 29 29 H 1.09001 * 109.47294 * 59.99727 * 1 2 3 30 30 H 1.09005 * 109.47034 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47158 * 240.00338 * 2 1 3 32 32 H 1.09001 * 109.47277 * 300.00284 * 3 2 1 33 33 H 1.09004 * 109.46846 * 60.00147 * 3 2 1 34 34 H 1.08999 * 109.47495 * 179.97438 * 3 2 1 35 35 H 1.07998 * 120.00435 * 0.06319 * 5 4 2 36 36 H 1.08008 * 120.00204 * 179.83728 * 6 5 4 37 37 H 1.08002 * 119.99728 * 179.97438 * 7 6 5 38 38 H 1.07996 * 120.00508 * 180.02562 * 8 7 6 39 39 H 1.09005 * 109.46942 * 59.72609 * 10 9 4 40 40 H 1.09004 * 109.47215 * 299.72864 * 10 9 4 41 41 H 0.97005 * 120.00087 * 180.02562 * 17 16 14 42 42 H 1.07999 * 120.00080 * 359.97438 * 23 22 12 43 43 H 1.07997 * 120.00515 * 180.27456 * 24 23 22 44 44 H 1.07999 * 120.00016 * 179.83679 * 25 24 23 45 45 H 1.08003 * 119.99933 * 179.97438 * 26 25 24 46 46 H 1.08002 * 120.00169 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6947 -0.2406 2.4861 6 6 2.1595 -0.8893 3.6146 7 6 2.9586 -2.0104 3.4877 8 6 3.2924 -2.4827 2.2324 9 6 2.8269 -1.8341 1.1036 10 6 3.1914 -2.3486 -0.2652 11 8 4.0182 -3.5068 -0.1341 12 6 4.4228 -4.0762 -1.3808 13 1 4.4924 -3.2909 -2.1333 14 6 3.4085 -5.1017 -1.8173 15 1 2.9507 -5.0274 -2.7927 16 6 3.0648 -6.1349 -0.9715 17 7 3.4909 -6.1356 0.2727 18 14 1.9941 -7.5339 -1.5928 19 1 1.6495 -7.2982 -3.0179 20 1 2.7328 -8.8160 -1.4672 21 1 0.7484 -7.5993 -0.7871 22 6 5.7674 -4.7371 -1.2184 23 6 6.6314 -4.8195 -2.2943 24 6 7.8665 -5.4218 -2.1442 25 6 8.2340 -5.9497 -0.9206 26 6 7.3678 -5.8719 0.1539 27 6 6.1345 -5.2656 0.0050 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.0701 0.6348 2.5853 36 1 1.8979 -0.5209 4.5956 37 1 3.3221 -2.5170 4.3695 38 1 3.9163 -3.3586 2.1332 39 1 3.7324 -1.5760 -0.8116 40 1 2.2835 -2.6099 -0.8088 41 1 3.2494 -6.8627 0.8677 42 1 6.3427 -4.4107 -3.2513 43 1 8.5434 -5.4822 -2.9836 44 1 9.1979 -6.4226 -0.8041 45 1 7.6547 -6.2847 1.1098 46 1 5.4576 -5.2051 0.8445 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223911237.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:29:00 Heat of formation + Delta-G solvation = -6.853305 kcal Electronic energy + Delta-G solvation = -25687.816753 eV Core-core repulsion = 22313.793293 eV Total energy + Delta-G solvation = -3374.023461 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.167 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.40436 -38.27562 -36.23561 -35.10354 -32.90268 -31.25011 -30.20571 -29.72874 -29.39451 -27.03145 -26.71612 -25.25155 -23.22822 -22.71804 -21.47307 -20.65243 -20.13667 -19.49909 -16.74909 -16.45019 -15.75680 -15.51647 -14.89290 -14.63241 -14.32817 -14.14487 -14.03617 -13.59400 -13.45433 -13.25450 -13.17707 -13.08125 -12.53485 -12.29164 -12.22212 -12.07821 -11.73582 -11.67551 -11.59280 -11.03028 -11.01174 -10.99619 -10.97987 -10.72683 -10.45825 -10.25194 -10.09345 -9.97625 -9.87450 -9.21695 -8.70706 -8.32051 -8.27104 -7.93307 -7.80072 -7.47408 -6.02571 -4.20533 1.79578 1.91599 2.40710 2.51551 3.25610 3.34523 3.37095 4.23257 4.36971 4.77718 4.91105 4.95542 5.03976 5.27227 5.34636 5.37703 5.50874 5.56836 5.68431 5.69981 5.75793 5.82184 5.88465 5.90180 5.95844 6.03764 6.07813 6.14474 6.21976 6.32177 6.36750 6.41467 6.44522 6.50976 6.55972 6.63046 6.75544 6.84163 6.91979 7.03644 7.10959 7.16058 7.28825 7.45027 7.53913 7.63461 7.80506 7.93114 8.07994 8.16646 8.56220 8.99024 9.51746 10.95059 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.012220 B = 0.004621 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.701713 B = 6058.173972 C = 6694.443106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.062 4.062 3 C -0.140 4.140 4 C -0.081 4.081 5 C -0.124 4.124 6 C -0.132 4.132 7 C -0.132 4.132 8 C -0.081 4.081 9 C -0.066 4.066 10 C 0.110 3.890 11 O -0.355 6.355 12 C 0.246 3.754 13 H 0.016 0.984 14 C -0.554 4.554 15 H 0.059 0.941 16 C 0.090 3.910 17 N -0.836 5.836 18 Si 0.882 3.118 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.284 1.284 22 C -0.032 4.032 23 C -0.130 4.130 24 C -0.141 4.141 25 C -0.150 4.150 26 C -0.144 4.144 27 C -0.065 4.065 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.142 0.858 39 H 0.036 0.964 40 H 0.055 0.945 41 H 0.259 0.741 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.101 0.899 45 H 0.103 0.897 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.404 10.017 2.623 10.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.081 4.081 3 C -0.197 4.197 4 C -0.081 4.081 5 C -0.142 4.142 6 C -0.151 4.151 7 C -0.150 4.150 8 C -0.098 4.098 9 C -0.067 4.067 10 C 0.033 3.967 11 O -0.274 6.274 12 C 0.190 3.810 13 H 0.034 0.966 14 C -0.591 4.591 15 H 0.077 0.923 16 C -0.118 4.118 17 N -0.470 5.470 18 Si 0.709 3.291 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.210 1.210 22 C -0.032 4.032 23 C -0.148 4.148 24 C -0.159 4.159 25 C -0.169 4.169 26 C -0.162 4.162 27 C -0.084 4.084 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.160 0.840 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.125 0.875 43 H 0.122 0.878 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.355 9.840 2.975 10.285 hybrid contribution -0.699 -1.050 -0.545 1.374 sum -1.054 8.790 2.429 9.180 Atomic orbital electron populations 1.21823 0.94622 1.02109 1.01279 1.20152 0.95793 0.95782 0.96352 1.21824 1.01227 0.95336 1.01362 1.19542 0.98369 0.95688 0.94473 1.20727 1.01275 1.00232 0.91975 1.20984 0.99420 0.96815 0.97840 1.21150 0.99340 0.96916 0.97586 1.21233 0.98238 0.99425 0.90952 1.19831 0.96666 0.94214 0.95942 1.20866 0.95230 0.88593 0.92039 1.87992 1.67253 1.40692 1.31426 1.18520 0.89069 0.91058 0.82337 0.96568 1.21364 1.24382 1.11093 1.02215 0.92255 1.24900 0.95154 0.97280 0.94475 1.69986 1.42412 1.30645 1.03932 0.86719 0.80384 0.82748 0.79238 1.19764 1.20824 1.20976 1.20161 0.93635 0.96729 0.92701 1.20792 0.93991 1.01735 0.98318 1.20771 0.96874 1.01342 0.96886 1.20816 0.99254 1.02823 0.93972 1.21138 0.95555 1.01673 0.97841 1.21454 0.93829 0.93838 0.99249 0.92807 0.92725 0.92371 0.89979 0.92715 0.92770 0.92612 0.86934 0.87062 0.86756 0.83990 0.94606 0.92693 0.93106 0.87545 0.87810 0.88066 0.87850 0.83344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.00 37.16 0.33 -1.36 16 2 C -0.06 -0.84 2.96 -91.77 -0.27 -1.11 16 3 C -0.14 -1.59 9.01 37.16 0.33 -1.25 16 4 C -0.08 -1.27 4.78 -104.63 -0.50 -1.77 16 5 C -0.12 -1.77 8.71 -39.58 -0.34 -2.12 16 6 C -0.13 -1.90 10.05 -39.59 -0.40 -2.30 16 7 C -0.13 -2.11 10.05 -39.58 -0.40 -2.51 16 8 C -0.08 -1.52 9.38 -39.58 -0.37 -1.89 16 9 C -0.07 -1.23 5.88 -104.62 -0.62 -1.85 16 10 C 0.11 2.21 4.59 36.01 0.17 2.38 16 11 O -0.35 -8.28 6.30 -35.23 -0.22 -8.50 16 12 C 0.25 5.92 2.56 -29.04 -0.07 5.84 16 13 H 0.02 0.38 7.73 -51.93 -0.40 -0.03 16 14 C -0.55 -14.49 8.85 -34.44 -0.30 -14.80 16 15 H 0.06 1.56 7.83 -52.49 -0.41 1.15 16 16 C 0.09 2.36 5.22 -17.82 -0.09 2.27 16 17 N -0.84 -22.06 9.54 55.43 0.53 -21.53 16 18 Si 0.88 20.74 29.55 -169.99 -5.02 15.72 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C -0.03 -0.74 4.83 -104.63 -0.50 -1.24 16 23 C -0.13 -2.73 9.71 -39.59 -0.38 -3.11 16 24 C -0.14 -2.66 10.05 -39.58 -0.40 -3.05 16 25 C -0.15 -2.82 10.05 -39.58 -0.40 -3.22 16 26 C -0.14 -2.92 10.05 -39.58 -0.40 -3.32 16 27 C -0.07 -1.50 8.08 -39.59 -0.32 -1.82 16 28 H 0.05 0.59 7.38 -51.93 -0.38 0.21 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.18 6.01 -51.93 -0.31 0.86 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.56 7.40 -51.93 -0.38 0.18 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.11 1.35 7.10 -52.49 -0.37 0.97 16 36 H 0.11 1.30 8.06 -52.48 -0.42 0.87 16 37 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.14 2.98 7.01 -52.49 -0.37 2.61 16 39 H 0.04 0.67 7.78 -51.93 -0.40 0.27 16 40 H 0.06 1.16 7.86 -51.93 -0.41 0.75 16 41 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 42 H 0.11 2.05 8.06 -52.49 -0.42 1.63 16 43 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 44 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 45 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 46 H 0.15 3.67 5.98 -52.49 -0.31 3.35 16 LS Contribution 371.79 15.07 5.60 5.60 Total: -1.00 -27.36 371.79 -11.17 -38.53 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -7.12 Total: 6.40 kcal Atomic # 6 Polarization: -31.28 SS G_CDS: -4.94 Total: -36.22 kcal Atomic # 7 Polarization: -22.06 SS G_CDS: 0.53 Total: -21.53 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: -0.22 Total: -8.50 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -27.36 -11.17 -38.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223911237.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.679 kcal (2) G-P(sol) polarization free energy of solvation -27.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds