Wall clock time and date at job start Tue Mar 31 2020 09:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50694 * 119.99945 * 2 1 4 4 C 1.50699 * 119.99937 * 180.02562 * 2 1 3 5 5 H 1.08999 * 110.42335 * 7.30616 * 4 2 1 6 6 O 1.44424 * 110.37248 * 129.61777 * 4 2 1 7 7 C 1.44427 * 105.27475 * 159.34273 * 6 4 2 8 8 C 1.54481 * 104.80440 * 319.48935 * 7 6 4 9 9 C 1.54480 * 110.36934 * 244.99808 * 4 2 1 10 10 H 1.08997 * 110.62928 * 335.88769 * 9 4 2 11 11 C 1.52998 * 110.51106 * 98.54627 * 9 4 2 12 12 N 1.46506 * 109.47237 * 181.09291 * 11 9 4 13 13 C 1.34773 * 119.99969 * 179.72043 * 12 11 9 14 14 O 1.21348 * 120.00453 * 0.02562 * 13 12 11 15 15 C 1.49456 * 119.99965 * 180.02562 * 13 12 11 16 16 O 1.21348 * 119.99585 * 359.97438 * 15 13 12 17 17 N 1.34773 * 119.99966 * 180.02562 * 15 13 12 18 18 C 1.46496 * 119.99975 * 179.97438 * 17 15 13 19 19 C 1.52995 * 109.47522 * 179.97438 * 18 17 15 20 20 C 1.50696 * 109.47633 * 180.02562 * 19 18 17 21 21 H 1.08004 * 119.99951 * 0.02562 * 20 19 18 22 22 C 1.37880 * 120.00237 * 179.97438 * 20 19 18 23 23 N 1.31514 * 119.99844 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99951 * 0.02562 * 22 20 19 25 25 H 1.48492 * 109.47331 * 89.99493 * 24 22 20 26 26 H 1.48499 * 109.46888 * 209.99751 * 24 22 20 27 27 H 1.48502 * 109.46751 * 329.99470 * 24 22 20 28 28 H 1.08000 * 120.00072 * 359.97438 * 1 2 3 29 29 H 1.07997 * 119.99831 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47642 * 269.99804 * 3 2 1 31 31 H 1.09004 * 109.47301 * 30.00591 * 3 2 1 32 32 H 1.09004 * 109.47324 * 150.00405 * 3 2 1 33 33 H 1.09004 * 110.37411 * 200.65499 * 7 6 4 34 34 H 1.09004 * 110.37301 * 78.31597 * 7 6 4 35 35 H 1.09001 * 110.50852 * 265.33456 * 8 7 6 36 36 H 1.08995 * 110.51833 * 142.62654 * 8 7 6 37 37 H 1.09001 * 109.47671 * 61.09631 * 11 9 4 38 38 H 1.08998 * 109.47454 * 301.09628 * 11 9 4 39 39 H 0.97005 * 119.99811 * 0.02562 * 12 11 9 40 40 H 0.97004 * 120.00022 * 0.02562 * 17 15 13 41 41 H 1.08999 * 109.47567 * 300.00249 * 18 17 15 42 42 H 1.09010 * 109.47207 * 59.99635 * 18 17 15 43 43 H 1.09007 * 109.47025 * 300.00549 * 19 18 17 44 44 H 1.09006 * 109.47143 * 60.00242 * 19 18 17 45 45 H 0.96995 * 119.99773 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 1 1.3762 -2.1410 -0.1309 6 8 3.0625 -1.3084 -1.0435 7 6 4.0141 -2.3233 -0.6557 8 6 4.1752 -2.1507 0.8709 9 6 2.8624 -1.4653 1.3118 10 1 3.0703 -0.4920 1.7561 11 6 2.1001 -2.3518 2.2987 12 7 2.8648 -2.4671 3.5430 13 6 2.3816 -3.2004 4.5654 14 8 1.3135 -3.7656 4.4552 15 6 3.1614 -3.3175 5.8350 16 8 4.2298 -2.7527 5.9450 17 7 2.6785 -4.0512 6.8572 18 6 3.4432 -4.1664 8.1014 19 6 2.6777 -5.0473 9.0908 20 6 3.4639 -5.1653 10.3710 21 1 4.4144 -4.6620 10.4693 22 6 2.9693 -5.9150 11.4172 23 7 3.6558 -6.0184 12.5342 24 14 1.3250 -6.7849 11.2474 25 1 1.5403 -8.1478 10.6987 26 1 0.6778 -6.8844 12.5803 27 1 0.4497 -6.0138 10.3284 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 2.2452 1.6198 -1.0276 31 1 1.4744 2.0647 0.5139 32 1 3.0160 1.1747 0.5138 33 1 4.9675 -2.1616 -1.1586 34 1 3.6259 -3.3154 -0.8865 35 1 5.0318 -1.5151 1.0951 36 1 4.2811 -3.1210 1.3561 37 1 1.9608 -3.3421 1.8649 38 1 1.1274 -1.9076 2.5098 39 1 3.7168 -2.0120 3.6326 40 1 1.8250 -4.5036 6.7687 41 1 4.4141 -4.6149 7.8911 42 1 3.5865 -3.1757 8.5330 43 1 1.7068 -4.5984 9.3011 44 1 2.5341 -6.0380 8.6596 45 1 3.3080 -6.5460 13.2700 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327754336.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:34 Heat of formation + Delta-G solvation = -109.840640 kcal Electronic energy + Delta-G solvation = -25020.909081 eV Core-core repulsion = 21231.570491 eV Total energy + Delta-G solvation = -3789.338590 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.79277 -40.12606 -38.38371 -35.89773 -35.57387 -35.04279 -32.86629 -32.34009 -30.31908 -29.58342 -27.75352 -26.88893 -25.34483 -23.40773 -23.12638 -21.06438 -20.91980 -20.30986 -19.25718 -18.42793 -17.10482 -16.73175 -16.61013 -16.36078 -15.94355 -15.81452 -15.39991 -14.86348 -14.80543 -14.27240 -14.20106 -13.95003 -13.91815 -13.62267 -13.52675 -13.33183 -12.94433 -12.63401 -12.33472 -12.08661 -11.97033 -11.68173 -11.55096 -11.51467 -11.40532 -11.26981 -11.12828 -10.46629 -10.33490 -10.28739 -9.97937 -9.58522 -9.49272 -9.47113 -9.33244 -8.80916 -8.63262 -6.14164 -4.14990 1.49052 1.66373 2.38570 3.25094 3.30778 3.33215 3.34911 3.49299 3.70277 3.97286 4.16926 4.28419 4.36047 4.48769 4.54622 4.62152 4.66214 4.76988 4.83450 5.09125 5.18883 5.19238 5.24040 5.29356 5.33453 5.37998 5.43174 5.53203 5.58639 5.66851 5.93852 5.96796 6.07473 6.11792 6.24544 6.42805 6.44048 6.47723 6.88164 7.05813 7.16003 7.50814 7.60446 7.79673 8.16719 8.39780 8.88995 9.45711 10.98549 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.028877 B = 0.002146 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.388737 B =13045.902199 C =13353.453602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.123 4.123 3 C -0.114 4.114 4 C 0.121 3.879 5 H 0.079 0.921 6 O -0.363 6.363 7 C 0.044 3.956 8 C -0.156 4.156 9 C -0.129 4.129 10 H 0.097 0.903 11 C 0.127 3.873 12 N -0.704 5.704 13 C 0.508 3.492 14 O -0.520 6.520 15 C 0.498 3.502 16 O -0.529 6.529 17 N -0.690 5.690 18 C 0.127 3.873 19 C -0.024 4.024 20 C -0.524 4.524 21 H 0.077 0.923 22 C 0.070 3.930 23 N -0.897 5.897 24 Si 0.881 3.119 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.265 1.265 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.414 0.586 40 H 0.409 0.591 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.025 0.975 44 H 0.020 0.980 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.561 10.930 -28.639 30.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.123 4.123 3 C -0.170 4.170 4 C 0.062 3.938 5 H 0.097 0.903 6 O -0.281 6.281 7 C -0.033 4.033 8 C -0.194 4.194 9 C -0.148 4.148 10 H 0.116 0.884 11 C 0.004 3.996 12 N -0.358 5.358 13 C 0.289 3.711 14 O -0.395 6.395 15 C 0.278 3.722 16 O -0.406 6.406 17 N -0.341 5.341 18 C 0.005 3.995 19 C -0.061 4.061 20 C -0.563 4.563 21 H 0.095 0.905 22 C -0.132 4.132 23 N -0.535 5.535 24 Si 0.708 3.292 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.190 1.190 28 H 0.124 0.876 29 H 0.119 0.881 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.113 0.887 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.250 0.750 40 H 0.244 0.756 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.043 0.957 44 H 0.038 0.962 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.557 10.965 -28.615 30.850 hybrid contribution -0.828 -0.713 0.281 1.129 sum -4.385 10.252 -28.334 30.449 Atomic orbital electron populations 1.23780 0.94892 1.02538 1.00281 1.21498 0.94983 0.94860 1.00934 1.20762 1.00091 0.93743 1.02443 1.21897 0.90370 0.95664 0.85834 0.90344 1.89194 1.36958 1.57724 1.44268 1.23436 0.93660 0.92053 0.94129 1.23109 0.97603 1.02156 0.96531 1.22839 0.95460 1.00528 0.95969 0.88443 1.21419 0.95048 1.00042 0.83090 1.45711 1.25159 1.51073 1.13899 1.20443 0.86007 0.79561 0.85058 1.90758 1.21652 1.45100 1.82035 1.19939 0.86238 0.81228 0.84805 1.90748 1.21757 1.46090 1.82051 1.46211 1.24749 1.48401 1.14760 1.21721 0.95170 1.01443 0.81119 1.19826 0.96734 0.94709 0.94879 1.20870 1.07127 1.32074 0.96205 0.90535 1.24991 0.97310 0.95899 0.95017 1.69897 1.38496 1.40580 1.04525 0.86762 0.84408 0.80385 0.77634 1.20156 1.21217 1.18952 0.87633 0.88116 0.91147 0.91835 0.91717 0.88721 0.91994 0.89921 0.89709 0.90683 0.90505 0.75005 0.75556 0.91239 0.91216 0.95714 0.96154 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.14 13.91 29.01 0.40 -0.74 16 2 C -0.12 -0.88 5.13 -101.07 -0.52 -1.39 16 3 C -0.11 -0.73 9.69 36.00 0.35 -0.38 16 4 C 0.12 0.87 3.04 -27.11 -0.08 0.79 16 5 H 0.08 0.54 7.58 -51.93 -0.39 0.14 16 6 O -0.36 -3.09 11.14 -35.23 -0.39 -3.48 16 7 C 0.04 0.27 7.63 37.93 0.29 0.56 16 8 C -0.16 -0.93 6.43 -25.16 -0.16 -1.09 16 9 C -0.13 -0.85 2.61 -89.05 -0.23 -1.09 16 10 H 0.10 0.64 6.80 -51.93 -0.35 0.29 16 11 C 0.13 1.04 4.79 -4.04 -0.02 1.02 16 12 N -0.70 -7.17 5.33 -60.73 -0.32 -7.49 16 13 C 0.51 6.96 7.89 -11.58 -0.09 6.87 16 14 O -0.52 -8.10 16.48 5.50 0.09 -8.01 16 15 C 0.50 7.98 7.89 -11.58 -0.09 7.89 16 16 O -0.53 -9.44 16.48 5.50 0.09 -9.35 16 17 N -0.69 -11.61 5.55 -60.73 -0.34 -11.95 16 18 C 0.13 2.50 5.61 -4.05 -0.02 2.48 16 19 C -0.02 -0.54 4.15 -27.89 -0.12 -0.65 16 20 C -0.52 -14.44 9.66 -34.44 -0.33 -14.78 16 21 H 0.08 2.27 7.99 -52.48 -0.42 1.85 16 22 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 23 N -0.90 -27.02 13.96 55.43 0.77 -26.24 16 24 Si 0.88 21.01 27.47 -169.99 -4.67 16.34 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 28 H 0.11 0.57 8.04 -52.49 -0.42 0.15 16 29 H 0.10 0.58 7.88 -52.49 -0.41 0.17 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.35 8.06 -51.93 -0.42 -0.07 16 32 H 0.06 0.41 7.05 -51.93 -0.37 0.05 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.52 7.67 -51.93 -0.40 0.12 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.41 3.80 7.80 -40.82 -0.32 3.49 16 40 H 0.41 6.39 7.94 -40.82 -0.32 6.06 16 41 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 42 H 0.07 1.41 8.14 -51.92 -0.42 0.99 16 43 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 44 H 0.02 0.45 7.57 -51.93 -0.39 0.05 16 45 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 376.09 15.07 5.67 5.67 Total: -1.00 -32.23 376.09 -6.97 -39.20 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -7.14 Total: 3.95 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -0.72 Total: 1.38 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.11 Total: -45.69 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.21 Total: -20.84 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.23 -6.97 -39.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327754336.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.642 kcal (2) G-P(sol) polarization free energy of solvation -32.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds