Wall clock time and date at job start Tue Mar 31 2020 10:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38253 * 119.99605 * 2 1 4 4 C 1.38220 * 119.99515 * 179.76965 * 3 2 1 5 5 C 1.38256 * 120.00034 * 0.52345 * 4 3 2 6 6 C 1.50699 * 120.00368 * 179.74772 * 5 4 3 7 7 N 1.46896 * 109.47154 * 259.72735 * 6 5 4 8 8 C 1.46904 * 111.00136 * 71.70741 * 7 6 5 9 9 C 1.50698 * 109.47003 * 63.32470 * 8 7 6 10 10 H 1.07989 * 120.00603 * 356.09137 * 9 8 7 11 11 C 1.37881 * 119.99812 * 176.08925 * 9 8 7 12 12 N 1.31525 * 120.00072 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00351 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47143 * 89.99765 * 13 11 9 15 15 H 1.48495 * 109.47280 * 209.99865 * 13 11 9 16 16 H 1.48503 * 109.46890 * 329.99999 * 13 11 9 17 17 C 1.46900 * 111.00181 * 195.65584 * 7 6 5 18 18 C 1.50702 * 109.47273 * 169.99932 * 17 7 6 19 19 C 1.38669 * 120.42057 * 270.25649 * 18 17 7 20 20 C 1.38628 * 118.41973 * 180.24060 * 19 18 17 21 21 C 1.38222 * 119.16351 * 359.75672 * 20 19 18 22 22 N 1.31861 * 120.76247 * 359.97438 * 21 20 19 23 23 C 1.31886 * 121.72511 * 0.02562 * 22 21 20 24 24 C 1.38219 * 120.00099 * 359.47101 * 5 4 3 25 25 C 1.50695 * 120.00323 * 180.27335 * 24 5 4 26 26 C 1.38214 * 119.99952 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.46959 * 269.97863 * 1 2 3 28 28 H 1.08996 * 109.47167 * 29.98494 * 1 2 3 29 29 H 1.09004 * 109.46839 * 149.97802 * 1 2 3 30 30 H 1.07994 * 120.00336 * 359.97438 * 3 2 1 31 31 H 1.07997 * 120.00374 * 180.27420 * 4 3 2 32 32 H 1.09001 * 109.47514 * 139.72170 * 6 5 4 33 33 H 1.09001 * 109.46790 * 19.72840 * 6 5 4 34 34 H 1.08994 * 109.47152 * 183.33238 * 8 7 6 35 35 H 1.09004 * 109.46517 * 303.32981 * 8 7 6 36 36 H 0.96998 * 119.99857 * 180.02562 * 12 11 9 37 37 H 1.09002 * 109.46715 * 50.00375 * 17 7 6 38 38 H 1.08999 * 109.47191 * 290.00356 * 17 7 6 39 39 H 1.08004 * 120.78985 * 359.96952 * 19 18 17 40 40 H 1.07999 * 120.41553 * 179.72518 * 20 19 18 41 41 H 1.07999 * 119.62201 * 180.02562 * 21 20 19 42 42 H 1.07999 * 119.61508 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.47184 * 90.00317 * 25 24 5 44 44 H 1.09001 * 109.47539 * 210.00763 * 25 24 5 45 45 H 1.09007 * 109.46890 * 330.00527 * 25 24 5 46 46 H 1.08004 * 120.00303 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1973 0.0048 5 6 4.2717 0.0000 -0.0013 6 6 5.7787 0.0000 -0.0018 7 7 6.2679 -0.2403 -1.3659 8 6 6.0373 0.9311 -2.2219 9 6 6.8292 2.1007 -1.6966 10 1 7.3922 2.0038 -0.7802 11 6 6.8348 3.2947 -2.3861 12 7 6.1488 3.4130 -3.5020 13 14 7.8169 4.7445 -1.7354 14 1 9.1922 4.7012 -2.2938 15 1 7.1573 6.0114 -2.1416 16 1 7.8818 4.6731 -0.2535 17 6 7.6884 -0.6146 -1.3575 18 6 8.0911 -1.0888 -2.7302 19 6 7.9771 -2.4278 -3.0719 20 6 8.3643 -2.8193 -4.3442 21 6 8.8429 -1.8678 -5.2252 22 7 8.9325 -0.6019 -4.8675 23 6 8.5734 -0.1936 -3.6659 24 6 3.5807 -1.1970 -0.0012 25 6 4.3341 -2.5021 -0.0016 26 6 2.1981 -1.1970 -0.0005 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3633 0.8901 -0.5136 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6583 2.1326 -0.0004 31 1 4.1205 2.1326 0.0093 32 1 6.1423 -0.7873 0.6586 33 1 6.1422 0.9656 0.3497 34 1 6.3546 0.7053 -3.2399 35 1 4.9761 1.1800 -2.2188 36 1 6.1531 4.2529 -3.9872 37 1 7.8489 -1.4149 -0.6351 38 1 8.2906 0.2508 -1.0808 39 1 7.5999 -3.1494 -2.3623 40 1 8.2934 -3.8547 -4.6430 41 1 9.1463 -2.1646 -6.2184 42 1 8.6615 0.8516 -3.4089 43 1 4.5162 -2.8169 1.0259 44 1 3.7450 -3.2617 -0.5155 45 1 5.2865 -2.3716 -0.5158 46 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159050310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:07:39 Heat of formation + Delta-G solvation = 52.864323 kcal Electronic energy + Delta-G solvation = -25744.565690 eV Core-core repulsion = 22405.424531 eV Total energy + Delta-G solvation = -3339.141159 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.75329 -39.23114 -36.72819 -33.48046 -32.71122 -31.98155 -31.56145 -30.79404 -28.02558 -27.06725 -26.71864 -24.94927 -23.77584 -22.96548 -21.94099 -21.52775 -20.14333 -19.29168 -16.76222 -16.38416 -15.84152 -15.52315 -15.26708 -14.86821 -14.68899 -14.53020 -14.27425 -13.74176 -13.50233 -13.11288 -13.06053 -12.83545 -12.68247 -12.56279 -12.42049 -12.28628 -12.12253 -11.67664 -11.34964 -11.29128 -11.24009 -11.03591 -10.85391 -10.79804 -10.53509 -10.30016 -10.13740 -10.02272 -9.68596 -9.29017 -8.88287 -8.48452 -8.42263 -8.22260 -7.92895 -7.22501 -6.04612 -4.14812 1.61714 1.78894 1.85849 1.91647 3.24953 3.33297 3.34040 4.13982 4.35545 4.37270 4.97018 5.11255 5.19081 5.21274 5.22544 5.25711 5.43713 5.44461 5.47631 5.50043 5.58941 5.68373 5.72008 5.74710 5.86089 5.93422 5.97505 6.00774 6.03622 6.06763 6.24919 6.33164 6.36398 6.42016 6.51419 6.56027 6.61790 6.73201 6.88148 6.96081 7.04365 7.20326 7.27532 7.31266 7.52725 7.55831 7.89449 7.97797 8.19904 8.24992 8.54267 8.95739 9.51781 10.99698 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.009562 B = 0.005708 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2927.621478 B = 4904.321758 C = 6993.063169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.097 4.097 3 C -0.131 4.131 4 C -0.089 4.089 5 C -0.062 4.062 6 C 0.095 3.905 7 N -0.529 5.529 8 C 0.184 3.816 9 C -0.552 4.552 10 H 0.056 0.944 11 C 0.071 3.929 12 N -0.881 5.881 13 Si 0.881 3.119 14 H -0.279 1.279 15 H -0.286 1.286 16 H -0.275 1.275 17 C 0.099 3.901 18 C -0.109 4.109 19 C -0.067 4.067 20 C -0.187 4.187 21 C 0.082 3.918 22 N -0.490 5.490 23 C 0.128 3.872 24 C -0.067 4.067 25 C -0.114 4.114 26 C -0.132 4.132 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.036 0.964 35 H 0.032 0.968 36 H 0.263 0.737 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.145 0.855 42 H 0.166 0.834 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.083 0.917 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.156 -11.391 5.887 13.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.097 4.097 3 C -0.149 4.149 4 C -0.107 4.107 5 C -0.063 4.063 6 C -0.033 4.033 7 N -0.253 5.253 8 C 0.059 3.941 9 C -0.591 4.591 10 H 0.074 0.926 11 C -0.133 4.133 12 N -0.519 5.519 13 Si 0.709 3.291 14 H -0.205 1.205 15 H -0.212 1.212 16 H -0.200 1.200 17 C -0.029 4.029 18 C -0.111 4.111 19 C -0.093 4.093 20 C -0.207 4.207 21 C -0.075 4.075 22 N -0.198 5.198 23 C -0.030 4.030 24 C -0.068 4.068 25 C -0.170 4.170 26 C -0.150 4.150 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.132 0.868 31 H 0.145 0.855 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.162 0.838 42 H 0.183 0.817 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.102 0.898 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.149 -11.047 4.935 12.502 hybrid contribution 0.480 1.094 1.019 1.570 sum -2.669 -9.952 5.954 11.900 Atomic orbital electron populations 1.20720 0.92001 1.02252 1.01565 1.19758 0.95398 0.93374 1.01156 1.20925 0.94366 0.97006 1.02574 1.21201 0.93782 0.98371 0.97381 1.19657 0.95554 0.92135 0.98914 1.20896 0.90456 1.00539 0.91375 1.62613 1.13935 1.39600 1.09102 1.19829 0.97225 0.84495 0.92590 1.21632 1.30839 0.97516 1.09112 0.92550 1.24909 0.95239 0.98410 0.94734 1.69949 1.40386 1.26054 1.15511 0.86772 0.80500 0.82643 0.79201 1.20533 1.21221 1.20020 1.20837 0.91298 0.99212 0.91592 1.20815 0.98546 0.93716 0.98054 1.21380 0.96122 0.95774 0.96039 1.21975 1.02881 1.00599 0.95264 1.22636 0.96673 0.88930 0.99217 1.67748 1.15962 1.17422 1.18707 1.23057 0.91648 1.00722 0.87527 1.19670 0.93131 0.95043 0.98930 1.20802 1.01354 0.93715 1.01158 1.20745 0.93586 0.96907 1.03765 0.91849 0.91923 0.92084 0.86844 0.85537 0.92139 0.92626 0.94614 0.94947 0.92761 0.92055 0.92388 0.85571 0.85764 0.83800 0.81725 0.92348 0.92562 0.89770 0.87053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.01 36.01 0.36 -0.90 16 2 C -0.10 -1.45 5.88 -104.62 -0.62 -2.07 16 3 C -0.13 -2.16 9.70 -39.58 -0.38 -2.54 16 4 C -0.09 -1.64 8.76 -39.58 -0.35 -1.99 16 5 C -0.06 -1.11 4.77 -104.62 -0.50 -1.61 16 6 C 0.09 1.71 4.08 -4.98 -0.02 1.69 16 7 N -0.53 -10.32 3.99 -238.96 -0.95 -11.27 16 8 C 0.18 4.42 4.57 -4.97 -0.02 4.40 16 9 C -0.55 -13.84 6.90 -34.44 -0.24 -14.07 16 10 H 0.06 1.39 5.95 -52.49 -0.31 1.08 16 11 C 0.07 1.88 5.46 -17.81 -0.10 1.78 16 12 N -0.88 -25.00 13.29 55.43 0.74 -24.26 16 13 Si 0.88 20.57 29.54 -169.99 -5.02 15.55 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 17 C 0.10 1.75 4.93 -4.97 -0.02 1.72 16 18 C -0.11 -1.95 4.89 -104.48 -0.51 -2.46 16 19 C -0.07 -1.02 9.86 -39.28 -0.39 -1.41 16 20 C -0.19 -2.66 10.11 -39.44 -0.40 -3.06 16 21 C 0.08 1.31 11.18 -17.54 -0.20 1.12 16 22 N -0.49 -9.58 10.36 -13.25 -0.14 -9.72 16 23 C 0.13 2.57 9.14 -17.55 -0.16 2.41 16 24 C -0.07 -1.08 5.88 -104.62 -0.62 -1.70 16 25 C -0.11 -1.54 9.26 36.00 0.33 -1.20 16 26 C -0.13 -1.99 9.36 -39.58 -0.37 -2.36 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 29 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 30 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.13 2.50 8.03 -52.49 -0.42 2.07 16 32 H 0.06 0.94 6.96 -51.93 -0.36 0.58 16 33 H 0.06 1.10 6.20 -51.93 -0.32 0.78 16 34 H 0.04 0.96 6.13 -51.93 -0.32 0.64 16 35 H 0.03 0.87 6.69 -51.93 -0.35 0.53 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.06 0.92 7.82 -51.93 -0.41 0.51 16 38 H 0.06 1.11 6.36 -51.93 -0.33 0.78 16 39 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 40 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 41 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 42 H 0.17 3.69 7.60 -52.49 -0.40 3.29 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 45 H 0.08 1.22 6.35 -51.92 -0.33 0.89 16 46 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 370.48 15.07 5.58 5.58 Total: -1.00 -28.88 370.48 -10.89 -39.77 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -6.90 Total: 6.60 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: -4.19 Total: -22.26 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: -0.35 Total: -45.25 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.88 -10.89 -39.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159050310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.633 kcal (2) G-P(sol) polarization free energy of solvation -28.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds