Wall clock time and date at job start Tue Mar 31 2020 10:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35241 * 126.07402 * 2 1 4 4 C 1.40403 * 107.87032 * 180.16205 * 3 2 1 5 5 N 1.40196 * 125.97362 * 179.83093 * 4 3 2 6 6 C 1.34777 * 119.99786 * 359.72037 * 5 4 3 7 7 O 1.21593 * 120.00265 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99726 * 179.72659 * 6 5 4 9 9 C 1.46499 * 120.00195 * 180.27548 * 8 6 5 10 10 C 1.53007 * 109.46904 * 299.99767 * 9 8 6 11 11 C 1.53001 * 109.47020 * 59.99567 * 9 8 6 12 12 C 1.52990 * 109.47304 * 179.97438 * 9 8 6 13 13 C 1.53009 * 109.47205 * 179.97438 * 12 9 8 14 14 O 1.42900 * 109.47172 * 179.97438 * 13 12 9 15 15 N 1.31207 * 108.05312 * 359.56664 * 4 3 2 16 16 N 1.34964 * 126.07040 * 179.68967 * 2 1 3 17 17 C 1.46503 * 125.97580 * 359.97438 * 16 2 1 18 18 C 1.50699 * 109.47232 * 270.00070 * 17 16 2 19 19 H 1.08004 * 119.99852 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00303 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99755 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99889 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47364 * 60.00352 * 22 20 18 24 24 H 1.48502 * 109.46795 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47383 * 299.99889 * 22 20 18 26 26 H 1.09000 * 109.46414 * 270.31468 * 1 2 3 27 27 H 1.08994 * 109.47042 * 30.31368 * 1 2 3 28 28 H 1.08993 * 109.47184 * 150.31712 * 1 2 3 29 29 H 1.08001 * 126.06385 * 0.02562 * 3 2 1 30 30 H 0.97000 * 119.99731 * 179.71519 * 5 4 3 31 31 H 0.97000 * 119.99736 * 0.26820 * 8 6 5 32 32 H 1.09001 * 109.46852 * 59.99838 * 10 9 8 33 33 H 1.08998 * 109.46963 * 179.97438 * 10 9 8 34 34 H 1.09003 * 109.46582 * 300.00210 * 10 9 8 35 35 H 1.08992 * 109.47503 * 60.00431 * 11 9 8 36 36 H 1.08998 * 109.46818 * 180.02562 * 11 9 8 37 37 H 1.09008 * 109.47076 * 299.99893 * 11 9 8 38 38 H 1.09006 * 109.47037 * 299.99466 * 12 9 8 39 39 H 1.09002 * 109.47663 * 59.99467 * 12 9 8 40 40 H 1.08992 * 109.46730 * 299.99570 * 13 12 9 41 41 H 1.08997 * 109.47029 * 59.99665 * 13 12 9 42 42 H 0.96696 * 114.00079 * 179.97438 * 14 13 12 43 43 H 1.09001 * 109.47222 * 29.99739 * 17 16 2 44 44 H 1.08997 * 109.47398 * 150.00005 * 17 16 2 45 45 H 0.97000 * 119.99662 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6545 -0.0038 5 7 4.7739 1.4750 -0.0084 6 6 4.6371 2.8158 -0.0151 7 8 3.5278 3.3138 -0.0178 8 7 5.7299 3.6047 -0.0140 9 6 5.5813 5.0621 -0.0152 10 6 4.8140 5.4954 -1.2661 11 6 4.8100 5.4972 1.2324 12 6 6.9645 5.7158 -0.0129 13 6 6.8093 7.2380 -0.0149 14 8 8.1013 7.8485 -0.0120 15 7 3.6337 -0.6576 0.0035 16 7 2.3017 -1.0909 0.0059 17 6 1.8501 -2.4846 0.0140 18 6 1.6957 -2.9544 1.4375 19 1 1.9120 -2.2819 2.2546 20 6 1.2775 -4.2423 1.6970 21 7 1.0127 -5.0606 0.7021 22 14 1.0869 -4.8248 3.4616 23 1 0.0870 -3.9758 4.1579 24 1 0.6290 -6.2374 3.4698 25 1 2.3935 -4.7244 4.1599 26 1 -0.3632 0.0056 1.0277 27 1 -0.3633 0.8871 -0.5187 28 1 -0.3633 -0.8927 -0.5089 29 1 1.9721 2.1210 0.0004 30 1 5.6588 1.0777 -0.0066 31 1 6.6148 3.2074 -0.0122 32 1 3.8285 5.0296 -1.2673 33 1 4.7031 6.5797 -1.2668 34 1 5.3636 5.1853 -2.1549 35 1 5.3565 5.1886 2.1235 36 1 4.6990 6.5815 1.2312 37 1 3.8244 5.0314 1.2311 38 1 7.5107 5.4071 0.8785 39 1 7.5145 5.4058 -0.9015 40 1 6.2633 7.5463 -0.9064 41 1 6.2592 7.5482 0.8735 42 1 8.0794 8.8152 -0.0135 43 1 0.8912 -2.5588 -0.4990 44 1 2.5845 -3.1075 -0.4966 45 1 0.7188 -5.9668 0.8847 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272124607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:16:02 Heat of formation + Delta-G solvation = -5.293835 kcal Electronic energy + Delta-G solvation = -25675.865768 eV Core-core repulsion = 21923.353419 eV Total energy + Delta-G solvation = -3752.512349 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.87197 -40.00938 -38.07128 -36.38581 -34.66608 -33.44872 -32.45219 -31.22791 -30.64075 -28.91065 -27.47340 -26.62568 -26.28448 -24.53677 -23.03115 -21.69078 -19.94678 -19.71191 -19.28863 -18.20683 -17.50272 -16.66401 -16.22541 -15.80827 -15.62334 -15.42623 -15.00953 -14.56922 -14.31253 -14.12326 -13.86886 -13.82548 -13.56273 -13.01138 -12.45655 -12.44019 -12.38335 -12.25561 -12.09451 -11.81906 -11.74797 -11.53303 -11.39960 -11.35432 -11.13987 -11.04572 -10.79104 -10.42850 -10.27750 -10.20603 -9.86878 -9.52096 -9.51070 -9.21394 -8.62332 -7.88199 -7.37268 -6.23602 -4.31112 2.36410 2.68130 3.12850 3.24356 3.28051 3.32231 3.53929 3.83172 3.86919 4.23390 4.34083 4.50290 4.66446 4.70082 4.91425 4.99127 5.07968 5.09932 5.41216 5.49746 5.50621 5.57303 5.57741 5.72377 5.75399 5.79033 5.95743 6.13543 6.15231 6.24565 6.25474 6.43458 6.50061 6.65203 6.67400 6.97276 7.07918 7.17868 7.18556 7.56612 7.69043 7.91235 7.99724 8.10110 8.64586 8.70478 8.78298 9.34929 10.83514 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.029808 B = 0.002464 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.114175 B =11362.081353 C =11636.874961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.090 3.910 3 C -0.288 4.288 4 C 0.283 3.717 5 N -0.645 5.645 6 C 0.717 3.283 7 O -0.562 6.562 8 N -0.739 5.739 9 C 0.199 3.801 10 C -0.169 4.169 11 C -0.170 4.170 12 C -0.122 4.122 13 C 0.077 3.923 14 O -0.577 6.577 15 N -0.325 5.325 16 N -0.319 5.319 17 C 0.259 3.741 18 C -0.535 4.535 19 H 0.063 0.937 20 C 0.065 3.935 21 N -0.892 5.892 22 Si 0.906 3.094 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.275 1.275 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.161 0.839 30 H 0.405 0.595 31 H 0.396 0.604 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.381 0.619 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.959 22.973 -2.779 24.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.042 4.042 3 C -0.319 4.319 4 C 0.029 3.971 5 N -0.295 5.295 6 C 0.416 3.584 7 O -0.437 6.437 8 N -0.395 5.395 9 C 0.112 3.888 10 C -0.227 4.227 11 C -0.228 4.228 12 C -0.161 4.161 13 C -0.001 4.001 14 O -0.382 6.382 15 N -0.156 5.156 16 N -0.101 5.101 17 C 0.142 3.858 18 C -0.574 4.574 19 H 0.082 0.918 20 C -0.138 4.138 21 N -0.530 5.530 22 Si 0.733 3.267 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.200 1.200 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.178 0.822 30 H 0.240 0.760 31 H 0.230 0.770 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.228 0.772 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.745 21.444 -2.829 23.331 hybrid contribution 0.297 0.304 0.974 1.062 sum 9.042 21.747 -1.855 23.625 Atomic orbital electron populations 1.20321 0.87980 1.02752 1.03097 1.21063 0.94862 0.87217 1.01028 1.21223 0.89644 0.99777 1.21291 1.18662 0.86581 0.89237 1.02593 1.41450 1.07566 1.03813 1.76640 1.15584 0.84763 0.80223 0.77816 1.90801 1.23630 1.73104 1.56191 1.45171 1.07580 1.05851 1.80893 1.19962 0.94303 0.77984 0.96504 1.22360 1.02915 1.01255 0.96214 1.22362 1.02923 1.01242 0.96268 1.21701 0.96175 0.94272 1.03902 1.22257 0.84509 0.92855 1.00515 1.86447 1.29384 1.24623 1.97772 1.77250 0.99924 1.08404 1.29977 1.48951 1.00904 1.07724 1.52530 1.19660 0.95918 0.71415 0.98844 1.21286 1.46742 0.97942 0.91386 0.91842 1.24927 0.94715 0.96064 0.98115 1.69910 1.44920 1.06994 1.31198 0.86412 0.78787 0.77637 0.83828 1.19941 1.20977 1.20021 0.90498 0.90868 0.90932 0.82196 0.76028 0.77031 0.89515 0.91914 0.92632 0.92603 0.91912 0.89508 0.90474 0.90494 0.92901 0.92897 0.77197 0.92840 0.93082 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 10.11 36.01 0.36 -1.07 16 2 C 0.09 1.91 6.93 -82.28 -0.57 1.34 16 3 C -0.29 -5.94 9.52 -39.83 -0.38 -6.32 16 4 C 0.28 5.78 8.11 -154.36 -1.25 4.53 16 5 N -0.64 -10.04 5.46 -15.51 -0.08 -10.13 16 6 C 0.72 10.29 7.95 -86.92 -0.69 9.59 16 7 O -0.56 -9.53 9.67 5.28 0.05 -9.48 16 8 N -0.74 -7.42 5.11 -52.42 -0.27 -7.69 16 9 C 0.20 1.77 0.83 -131.82 -0.11 1.66 16 10 C -0.17 -1.59 8.05 37.16 0.30 -1.29 16 11 C -0.17 -1.63 8.05 37.16 0.30 -1.33 16 12 C -0.12 -0.89 4.75 -26.73 -0.13 -1.01 16 13 C 0.08 0.48 6.34 37.16 0.24 0.72 16 14 O -0.58 -4.05 13.66 -35.23 -0.48 -4.54 16 15 N -0.32 -7.57 12.59 31.44 0.40 -7.17 16 16 N -0.32 -7.63 3.59 -58.32 -0.21 -7.84 16 17 C 0.26 6.71 5.99 -5.19 -0.03 6.68 16 18 C -0.53 -14.84 9.39 -34.44 -0.32 -15.17 16 19 H 0.06 1.82 7.81 -52.48 -0.41 1.41 16 20 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 21 N -0.89 -25.19 13.29 55.43 0.74 -24.45 16 22 Si 0.91 21.24 29.54 -169.99 -5.02 16.21 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 26 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.07 1.26 7.07 -51.93 -0.37 0.89 16 29 H 0.16 3.20 5.91 -52.49 -0.31 2.89 16 30 H 0.41 5.11 8.84 -40.82 -0.36 4.75 16 31 H 0.40 2.95 8.49 -40.82 -0.35 2.60 16 32 H 0.09 1.07 6.16 -51.93 -0.32 0.75 16 33 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 37 H 0.09 1.09 6.16 -51.92 -0.32 0.77 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.29 6.43 -51.93 -0.33 -0.04 16 41 H 0.05 0.30 6.43 -51.93 -0.33 -0.04 16 42 H 0.38 0.97 9.12 45.56 0.42 1.38 16 43 H 0.05 1.37 7.04 -51.93 -0.37 1.00 16 44 H 0.05 1.41 8.14 -51.93 -0.42 0.98 16 45 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 363.32 15.07 5.48 5.48 Total: -1.00 -33.68 363.32 -7.60 -41.28 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -5.81 Total: 8.31 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -2.38 Total: 0.01 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 0.57 Total: -57.28 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.43 Total: -14.01 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.68 -7.60 -41.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272124607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.991 kcal (2) G-P(sol) polarization free energy of solvation -33.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds