Wall clock time and date at job start Tue Mar 31 2020 09:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86795 * 120.00175 * 2 1 4 4 H 1.48502 * 109.47382 * 265.93507 * 3 2 1 5 5 H 1.48496 * 109.47366 * 25.93466 * 3 2 1 6 6 H 1.48507 * 109.47530 * 145.93489 * 3 2 1 7 7 C 1.37875 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00047 * 6.41436 * 7 2 1 9 9 C 1.50709 * 120.00145 * 186.13008 * 7 2 1 10 10 C 1.53002 * 115.54435 * 92.91291 * 9 7 2 11 11 N 1.46901 * 109.47414 * 304.76744 * 10 9 7 12 12 C 1.46901 * 111.00182 * 185.65425 * 11 10 9 13 13 H 1.08997 * 109.61431 * 324.66605 * 12 11 10 14 14 C 1.53254 * 109.61377 * 85.02265 * 12 11 10 15 15 C 1.53139 * 109.41465 * 169.98573 * 14 12 11 16 16 C 1.53320 * 109.32314 * 289.94542 * 15 14 12 17 17 C 1.50762 * 108.58223 * 49.66599 * 16 15 14 18 18 C 1.44820 * 128.49295 * 163.60904 * 17 16 15 19 19 C 1.39821 * 132.73459 * 0.04467 * 18 17 16 20 20 C 1.37307 * 116.87593 * 179.97438 * 19 18 17 21 21 C 1.38531 * 122.09304 * 0.02723 * 20 19 18 22 22 C 1.38407 * 122.24852 * 359.97438 * 21 20 19 23 23 C 1.39343 * 116.93198 * 359.97438 * 22 21 20 24 24 N 1.36500 * 132.10130 * 180.02562 * 23 22 21 25 25 H 0.97006 * 125.10948 * 359.91667 * 24 23 22 26 26 C 1.35307 * 124.46702 * 343.75515 * 17 16 15 27 27 C 1.52991 * 117.49723 * 307.24644 * 9 7 2 28 28 C 1.52991 * 117.50112 * 238.58266 * 9 7 2 29 29 H 0.97002 * 119.99658 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47292 * 64.77430 * 10 9 7 31 31 H 1.08997 * 109.46946 * 184.77308 * 10 9 7 32 32 H 1.00910 * 110.99578 * 61.70359 * 11 10 9 33 33 H 1.08992 * 109.48187 * 289.97454 * 14 12 11 34 34 H 1.09000 * 109.47995 * 50.00969 * 14 12 11 35 35 H 1.09004 * 109.49030 * 49.89393 * 15 14 12 36 36 H 1.08996 * 109.49761 * 169.98292 * 15 14 12 37 37 H 1.08997 * 109.61951 * 169.39925 * 16 15 14 38 38 H 1.09007 * 109.61294 * 289.93791 * 16 15 14 39 39 H 1.07998 * 121.56644 * 359.96334 * 19 18 17 40 40 H 1.07996 * 118.95425 * 180.02562 * 20 19 18 41 41 H 1.08003 * 118.87507 * 179.97438 * 21 20 19 42 42 H 1.07999 * 121.53583 * 179.97438 * 22 21 20 43 43 H 1.08999 * 117.50686 * 359.97438 * 27 9 7 44 44 H 1.09006 * 117.49694 * 145.01640 * 27 9 7 45 45 H 1.09000 * 117.50168 * 214.97692 * 28 9 7 46 46 H 1.09004 * 117.50233 * 0.02562 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5826 1.9968 -1.3965 5 1 1.4063 2.6759 0.6123 6 1 3.5011 1.4665 0.7842 7 6 2.0044 -1.1941 0.0005 8 1 1.4695 -2.1265 -0.1035 9 6 3.5050 -1.1978 0.1399 10 6 4.0346 -1.3425 1.5680 11 7 3.4551 -0.2907 2.4142 12 6 4.0424 -0.3149 3.7605 13 1 4.2479 -1.3449 4.0516 14 6 5.3456 0.4915 3.7677 15 6 5.8226 0.6752 5.2113 16 6 4.8753 1.6353 5.9403 17 6 3.4572 1.1785 5.7097 18 6 2.2607 1.5518 6.4352 19 6 2.0361 2.4050 7.5198 20 6 0.7404 2.5235 7.9585 21 6 -0.3040 1.8349 7.3634 22 6 -0.1105 0.9842 6.2889 23 6 1.1947 0.8450 5.8213 24 7 1.7288 0.1071 4.8047 25 1 1.2260 -0.4762 4.2148 26 6 3.0804 0.3081 4.7446 27 6 4.3063 -0.3222 -0.8254 28 6 4.3173 -1.8446 -0.9837 29 1 -0.4850 0.8401 -0.0004 30 1 3.7561 -2.3201 1.9616 31 1 5.1205 -1.2484 1.5641 32 1 2.4503 -0.3734 2.4565 33 1 6.1066 -0.0423 3.1985 34 1 5.1715 1.4679 3.3155 35 1 5.8246 -0.2893 5.7192 36 1 6.8310 1.0889 5.2114 37 1 5.0941 1.6250 7.0080 38 1 5.0034 2.6441 5.5476 39 1 2.8439 2.9455 7.9907 40 1 0.5288 3.1741 8.7941 41 1 -1.3034 1.9665 7.7511 42 1 -0.9332 0.4527 5.8340 43 1 3.7483 0.2564 -1.5616 44 1 5.2111 0.1506 -0.4432 45 1 5.2293 -2.3729 -0.7057 46 1 3.7664 -2.2672 -1.8241 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344124541.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:54 Heat of formation + Delta-G solvation = 76.392067 kcal Electronic energy + Delta-G solvation = -26069.349506 eV Core-core repulsion = 22731.228587 eV Total energy + Delta-G solvation = -3338.120919 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.39641 -38.06242 -37.01240 -35.74847 -34.05165 -32.09939 -31.46196 -29.54991 -28.30609 -28.05622 -25.79660 -24.85204 -23.03064 -22.03644 -21.69533 -21.57665 -20.42301 -18.98619 -18.41598 -17.55829 -16.51926 -16.17803 -15.45379 -15.22131 -14.75115 -14.34580 -14.18473 -14.07872 -13.91316 -13.81683 -13.64288 -13.22196 -12.84875 -12.55281 -12.44544 -12.19115 -12.12185 -11.68078 -11.47228 -11.34536 -11.16162 -11.05137 -10.87986 -10.62225 -10.55826 -10.28763 -10.22959 -9.95367 -9.46453 -9.37393 -9.04114 -8.59016 -8.53164 -7.97246 -7.62244 -7.28749 -6.11792 -4.18592 1.22105 1.81085 2.81484 3.30466 3.43016 3.55646 3.79218 4.05220 4.53280 4.57143 4.72182 4.82842 4.99673 5.04610 5.11953 5.15187 5.20084 5.27253 5.38572 5.44682 5.52268 5.60628 5.64867 5.71824 5.77522 5.89034 5.93297 6.04595 6.06124 6.08933 6.14652 6.19513 6.22132 6.30983 6.35305 6.40091 6.50435 6.55778 6.63735 6.73699 6.73975 6.89968 7.00223 7.05670 7.12147 7.35211 7.65360 7.72059 7.77551 7.98425 8.46621 8.88347 9.52648 10.97400 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.014606 B = 0.005115 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.558010 B = 5472.367708 C = 6615.714648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.083 3.917 3 Si 0.873 3.127 4 H -0.294 1.294 5 H -0.308 1.308 6 H -0.212 1.212 7 C -0.499 4.499 8 H 0.072 0.928 9 C 0.009 3.991 10 C 0.101 3.899 11 N -0.669 5.669 12 C 0.147 3.853 13 H 0.054 0.946 14 C -0.102 4.102 15 C -0.118 4.118 16 C -0.040 4.040 17 C -0.173 4.173 18 C -0.098 4.098 19 C -0.072 4.072 20 C -0.155 4.155 21 C -0.109 4.109 22 C -0.126 4.126 23 C 0.100 3.900 24 N -0.577 5.577 25 H 0.419 0.581 26 C 0.088 3.912 27 C -0.196 4.196 28 C -0.186 4.186 29 H 0.264 0.736 30 H 0.023 0.977 31 H 0.052 0.948 32 H 0.352 0.648 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.124 0.876 40 H 0.113 0.887 41 H 0.117 0.883 42 H 0.127 0.873 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.654 2.293 14.501 16.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.120 4.120 3 Si 0.701 3.299 4 H -0.222 1.222 5 H -0.236 1.236 6 H -0.134 1.134 7 C -0.536 4.536 8 H 0.090 0.910 9 C 0.008 3.992 10 C -0.028 4.028 11 N -0.302 5.302 12 C 0.036 3.964 13 H 0.071 0.929 14 C -0.141 4.141 15 C -0.156 4.156 16 C -0.077 4.077 17 C -0.180 4.180 18 C -0.103 4.103 19 C -0.091 4.091 20 C -0.174 4.174 21 C -0.128 4.128 22 C -0.147 4.147 23 C -0.009 4.009 24 N -0.177 5.177 25 H 0.257 0.743 26 C -0.022 4.022 27 C -0.233 4.233 28 C -0.224 4.224 29 H 0.073 0.927 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.173 0.827 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.142 0.858 40 H 0.131 0.869 41 H 0.135 0.865 42 H 0.145 0.855 43 H 0.101 0.899 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.860 2.777 14.174 16.444 hybrid contribution -0.670 -0.142 -0.251 0.729 sum 7.191 2.634 13.923 15.890 Atomic orbital electron populations 1.69930 1.06702 1.27343 1.49663 1.25002 0.94503 0.99412 0.93108 0.86997 0.82995 0.81910 0.77984 1.22159 1.23585 1.13422 1.20247 0.87189 0.94422 1.51750 0.90954 1.19351 0.94096 0.99080 0.86709 1.21560 0.96548 0.90799 0.93873 1.60668 1.11309 1.50312 1.07932 1.20354 0.92230 0.96828 0.86954 0.92862 1.21562 0.95031 1.01439 0.96030 1.21617 0.98487 0.99649 0.95851 1.19942 0.89279 0.98664 0.99829 1.19908 0.94478 1.03721 0.99916 1.18907 0.92078 1.00849 0.98472 1.20527 0.96451 0.97145 0.94933 1.20563 0.92805 1.02314 1.01709 1.20729 0.98786 0.97173 0.96139 1.20460 0.93133 1.02267 0.98826 1.18411 0.94355 0.96565 0.91608 1.41442 1.06968 1.40326 1.29012 0.74310 1.20672 0.82973 1.00054 0.98457 1.22910 1.02081 0.92919 1.05406 1.22886 1.01355 0.94863 1.03278 0.92687 0.95842 0.92969 0.82669 0.91442 0.90481 0.91998 0.91503 0.91549 0.91344 0.85759 0.86907 0.86530 0.85499 0.89892 0.90745 0.91194 0.89730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.56 13.96 55.43 0.77 -25.78 16 2 C 0.08 2.29 4.99 -17.82 -0.09 2.20 16 3 Si 0.87 21.87 23.29 -169.99 -3.96 17.91 16 4 H -0.29 -7.50 6.86 56.52 0.39 -7.11 16 5 H -0.31 -8.12 7.11 56.52 0.40 -7.72 16 6 H -0.21 -4.99 5.51 56.52 0.31 -4.68 16 7 C -0.50 -13.25 8.76 -34.44 -0.30 -13.55 16 8 H 0.07 2.12 8.06 -52.49 -0.42 1.70 16 9 C 0.01 0.19 1.41 -155.66 -0.22 -0.03 16 10 C 0.10 1.92 5.40 -3.82 -0.02 1.90 16 11 N -0.67 -12.65 3.89 -107.62 -0.42 -13.07 16 12 C 0.15 2.31 2.83 -68.55 -0.19 2.11 16 13 H 0.05 0.80 7.87 -51.93 -0.41 0.39 16 14 C -0.10 -1.41 5.33 -26.53 -0.14 -1.55 16 15 C -0.12 -1.34 5.92 -26.49 -0.16 -1.50 16 16 C -0.04 -0.49 6.28 -27.69 -0.17 -0.66 16 17 C -0.17 -2.66 6.13 -103.04 -0.63 -3.29 16 18 C -0.10 -1.54 6.27 -105.32 -0.66 -2.20 16 19 C -0.07 -0.96 10.26 -39.33 -0.40 -1.37 16 20 C -0.15 -1.91 9.89 -39.81 -0.39 -2.30 16 21 C -0.11 -1.38 9.93 -39.41 -0.39 -1.78 16 22 C -0.13 -1.81 10.29 -39.11 -0.40 -2.21 16 23 C 0.10 1.61 7.19 -83.99 -0.60 1.01 16 24 N -0.58 -9.51 5.72 -6.54 -0.04 -9.54 16 25 H 0.42 6.72 8.27 -40.82 -0.34 6.38 16 26 C 0.09 1.44 6.50 -81.25 -0.53 0.91 16 27 C -0.20 -4.14 7.11 -26.70 -0.19 -4.33 16 28 C -0.19 -3.69 9.96 -26.70 -0.27 -3.95 16 29 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.90 7.48 -51.93 -0.39 0.51 16 32 H 0.35 7.34 6.07 -39.29 -0.24 7.11 16 33 H 0.07 0.87 7.66 -51.93 -0.40 0.48 16 34 H 0.08 1.20 8.11 -51.93 -0.42 0.78 16 35 H 0.06 0.68 8.11 -51.93 -0.42 0.26 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 39 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 40 H 0.11 1.10 8.06 -52.49 -0.42 0.67 16 41 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 42 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 43 H 0.08 1.91 5.96 -51.93 -0.31 1.60 16 44 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 45 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 LS Contribution 355.94 15.07 5.36 5.36 Total: -1.00 -30.00 355.94 -11.28 -41.29 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: -7.24 Total: 14.42 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: -5.77 Total: -30.59 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: 0.32 Total: -48.40 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -3.96 Total: 17.91 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.00 -11.28 -41.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344124541.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.679 kcal (2) G-P(sol) polarization free energy of solvation -30.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds