Wall clock time and date at job start Tue Mar 31 2020 09:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00068 * 2 1 4 4 H 1.48495 * 109.47257 * 239.99743 * 3 2 1 5 5 H 1.48506 * 109.46989 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47180 * 119.99451 * 3 2 1 7 7 C 1.37879 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99933 * 173.51766 * 7 2 1 9 9 C 1.50703 * 120.00060 * 353.52384 * 7 2 1 10 10 C 1.52995 * 115.54866 * 85.36084 * 9 7 2 11 11 N 1.46895 * 109.47183 * 65.05520 * 10 9 7 12 12 C 1.46903 * 111.00177 * 185.38612 * 11 10 9 13 13 H 1.08997 * 109.61400 * 34.64192 * 12 11 10 14 14 C 1.53256 * 109.76209 * 274.19449 * 12 11 10 15 15 C 1.53135 * 109.41494 * 189.94066 * 14 12 11 16 16 C 1.53191 * 109.43824 * 69.94309 * 15 14 12 17 17 C 1.50762 * 108.64511 * 310.61828 * 16 15 14 18 18 C 1.44826 * 128.49472 * 196.30708 * 17 16 15 19 19 C 1.39828 * 132.72673 * 359.67329 * 18 17 16 20 20 C 1.37303 * 116.86728 * 180.02562 * 19 18 17 21 21 C 1.38537 * 122.10094 * 0.02562 * 20 19 18 22 22 C 1.38409 * 122.24630 * 359.97438 * 21 20 19 23 23 C 1.39352 * 116.92739 * 359.97438 * 22 21 20 24 24 N 1.36502 * 132.09540 * 179.97438 * 23 22 21 25 25 H 0.96998 * 125.10976 * 0.08350 * 24 23 22 26 26 C 1.35051 * 124.39567 * 15.99974 * 17 16 15 27 27 C 1.53002 * 117.49474 * 231.03331 * 9 7 2 28 28 C 1.52998 * 117.49340 * 299.69384 * 9 7 2 29 29 H 0.96998 * 120.00073 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47474 * 305.05160 * 10 9 7 31 31 H 1.09004 * 109.47006 * 185.05071 * 10 9 7 32 32 H 1.00905 * 111.00324 * 61.42851 * 11 10 9 33 33 H 1.09005 * 109.47882 * 309.92122 * 14 12 11 34 34 H 1.09000 * 109.47958 * 69.94751 * 14 12 11 35 35 H 1.09004 * 109.49937 * 190.02554 * 15 14 12 36 36 H 1.09000 * 109.49855 * 310.09075 * 15 14 12 37 37 H 1.08998 * 109.65573 * 190.83102 * 16 15 14 38 38 H 1.08998 * 109.51901 * 70.32787 * 16 15 14 39 39 H 1.08001 * 121.56725 * 0.04177 * 19 18 17 40 40 H 1.08007 * 118.95322 * 179.97438 * 20 19 18 41 41 H 1.07997 * 118.88022 * 179.97438 * 21 20 19 42 42 H 1.07995 * 121.53442 * 179.97438 * 22 21 20 43 43 H 1.08994 * 117.49351 * 214.99851 * 27 9 7 44 44 H 1.08993 * 117.49952 * 0.02562 * 27 9 7 45 45 H 1.08997 * 117.50548 * 359.97343 * 28 9 7 46 46 H 1.08999 * 117.49559 * 144.97838 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0794 -1.1971 -0.1051 9 6 1.2583 -2.4950 0.1483 10 6 0.7008 -3.0868 -1.1477 11 7 1.8118 -3.4589 -2.0337 12 6 1.3146 -3.9127 -3.3395 13 1 0.4209 -3.3488 -3.6068 14 6 0.9801 -5.4070 -3.2758 15 6 0.7020 -5.9270 -4.6891 16 6 2.0072 -5.9478 -5.4907 17 6 2.6868 -4.6105 -5.3401 18 6 3.7504 -4.0443 -6.1435 19 6 4.4596 -4.5205 -7.2505 20 6 5.4255 -3.6949 -7.7707 21 6 5.6948 -2.4468 -7.2330 22 6 5.0086 -1.9507 -6.1382 23 6 4.0212 -2.7667 -5.5895 24 7 3.1744 -2.5942 -4.5328 25 1 3.1406 -1.8065 -3.9678 26 6 2.3803 -3.7018 -4.3892 27 6 1.7484 -3.4729 1.2181 28 6 0.4433 -2.7004 1.4268 29 1 -0.4850 0.8400 -0.0004 30 1 0.0723 -2.3473 -1.6440 31 1 0.1077 -3.9719 -0.9174 32 1 2.3963 -4.1611 -1.6055 33 1 1.8228 -5.9501 -2.8480 34 1 0.0978 -5.5558 -2.6534 35 1 0.2932 -6.9358 -4.6317 36 1 -0.0151 -5.2715 -5.1833 37 1 1.7885 -6.1307 -6.5427 38 1 2.6575 -6.7341 -5.1074 39 1 4.2570 -5.4921 -7.6765 40 1 5.9942 -4.0294 -8.6258 41 1 6.4665 -1.8403 -7.6835 42 1 5.2282 -0.9761 -5.7281 43 1 1.6735 -4.5378 0.9986 44 1 2.6102 -3.1751 1.8153 45 1 0.4472 -1.8950 2.1611 46 1 -0.4902 -3.2571 1.3444 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344124543.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:57 Heat of formation + Delta-G solvation = 66.210350 kcal Electronic energy + Delta-G solvation = -25529.220858 eV Core-core repulsion = 22190.658427 eV Total energy + Delta-G solvation = -3338.562432 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.28816 -38.01769 -36.75533 -35.72347 -33.88966 -31.89915 -31.40021 -29.45750 -28.26329 -27.91154 -25.66162 -24.59064 -23.08638 -21.89261 -21.61563 -21.14639 -20.57030 -19.14585 -18.39550 -17.35215 -16.56996 -16.01357 -15.33104 -14.92834 -14.57162 -14.44599 -14.14970 -13.92902 -13.78524 -13.73264 -13.34686 -13.22761 -13.01477 -12.75516 -12.42588 -11.91109 -11.65228 -11.55951 -11.45467 -11.21012 -11.14531 -10.97351 -10.89470 -10.76019 -10.60082 -10.51452 -10.32651 -10.21061 -9.50825 -9.34333 -8.86207 -8.43110 -8.12312 -7.85482 -7.71402 -7.28471 -6.01788 -4.03671 1.26263 1.85298 2.90018 3.29315 3.34966 3.37675 3.48712 4.08068 4.40899 4.60842 4.80187 4.88628 4.98839 5.06034 5.15068 5.25877 5.28590 5.32338 5.40820 5.45934 5.60738 5.61342 5.66703 5.71781 5.88395 5.92087 6.02945 6.08424 6.13176 6.15840 6.18374 6.29600 6.33419 6.36771 6.44764 6.54449 6.65992 6.70099 6.76905 6.79558 6.94797 7.07759 7.12075 7.42850 7.44684 7.49825 7.81095 7.90711 7.91167 8.02558 8.49649 8.95400 9.59616 11.07836 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.013064 B = 0.004416 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.791508 B = 6338.671968 C = 7988.795168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.069 3.931 3 Si 0.886 3.114 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.472 4.472 8 H 0.057 0.943 9 C 0.053 3.947 10 C 0.108 3.892 11 N -0.665 5.665 12 C 0.144 3.856 13 H 0.091 0.909 14 C -0.140 4.140 15 C -0.115 4.115 16 C -0.037 4.037 17 C -0.191 4.191 18 C -0.098 4.098 19 C -0.074 4.074 20 C -0.157 4.157 21 C -0.111 4.111 22 C -0.128 4.128 23 C 0.095 3.905 24 N -0.562 5.562 25 H 0.426 0.574 26 C 0.114 3.886 27 C -0.215 4.215 28 C -0.158 4.158 29 H 0.258 0.742 30 H 0.076 0.924 31 H -0.001 1.001 32 H 0.336 0.664 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.123 0.877 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.125 0.875 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.234 -10.102 -12.213 16.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.134 4.134 3 Si 0.715 3.285 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.510 4.510 8 H 0.076 0.924 9 C 0.052 3.948 10 C -0.020 4.020 11 N -0.294 5.294 12 C 0.033 3.967 13 H 0.108 0.892 14 C -0.180 4.180 15 C -0.153 4.153 16 C -0.075 4.075 17 C -0.199 4.199 18 C -0.103 4.103 19 C -0.092 4.092 20 C -0.176 4.176 21 C -0.131 4.131 22 C -0.148 4.148 23 C -0.015 4.015 24 N -0.161 5.161 25 H 0.265 0.735 26 C 0.002 3.998 27 C -0.253 4.253 28 C -0.196 4.196 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.017 0.983 32 H 0.154 0.846 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.141 0.859 40 H 0.129 0.871 41 H 0.133 0.867 42 H 0.143 0.857 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.099 0.901 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.140 -9.180 -12.289 15.888 hybrid contribution 0.107 0.599 0.606 0.858 sum 4.246 -8.581 -11.684 15.106 Atomic orbital electron populations 1.69985 1.05765 1.26319 1.50084 1.24927 0.94737 0.98626 0.95062 0.86765 0.79650 0.83568 0.78553 1.20438 1.21488 1.20409 1.20249 0.92717 0.88421 1.49600 0.92440 1.18795 0.97184 0.93674 0.85160 1.21599 0.90421 0.95909 0.94083 1.60323 1.21873 1.44781 1.02435 1.20346 0.93584 0.94039 0.88771 0.89156 1.22277 1.02040 0.96155 0.97546 1.21536 0.97451 1.00974 0.95387 1.19873 0.95006 0.92921 0.99701 1.19836 1.02247 0.97832 0.99944 1.18886 0.99203 0.94076 0.98155 1.20513 0.95288 0.98835 0.94574 1.20537 1.00314 0.95151 1.01601 1.20703 0.99902 0.96165 0.96322 1.20433 0.96856 0.99319 0.98213 1.18465 0.95322 0.96320 0.91394 1.41517 1.30388 1.17771 1.26464 0.73527 1.20606 0.95016 0.86754 0.97385 1.22993 0.98518 0.95433 1.08327 1.22518 0.91992 1.01157 1.03910 0.93210 0.90526 0.98305 0.84573 0.91409 0.91258 0.91761 0.91735 0.91609 0.91721 0.85932 0.87074 0.86722 0.85704 0.92166 0.90575 0.90098 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.29 12.92 55.43 0.72 -23.58 16 2 C 0.07 1.82 5.39 -17.82 -0.10 1.72 16 3 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.47 -12.29 8.74 -34.44 -0.30 -12.59 16 8 H 0.06 1.53 7.82 -52.48 -0.41 1.12 16 9 C 0.05 1.22 1.55 -155.66 -0.24 0.98 16 10 C 0.11 2.23 5.36 -3.83 -0.02 2.20 16 11 N -0.67 -11.88 6.13 -107.62 -0.66 -12.54 16 12 C 0.14 2.21 2.81 -68.55 -0.19 2.02 16 13 H 0.09 1.47 7.72 -51.93 -0.40 1.07 16 14 C -0.14 -1.79 5.26 -26.53 -0.14 -1.93 16 15 C -0.12 -1.28 5.91 -26.56 -0.16 -1.43 16 16 C -0.04 -0.44 6.28 -27.75 -0.17 -0.61 16 17 C -0.19 -2.82 6.13 -103.12 -0.63 -3.45 16 18 C -0.10 -1.49 6.27 -105.31 -0.66 -2.15 16 19 C -0.07 -0.95 10.27 -39.33 -0.40 -1.36 16 20 C -0.16 -1.88 9.89 -39.81 -0.39 -2.27 16 21 C -0.11 -1.37 9.93 -39.41 -0.39 -1.76 16 22 C -0.13 -1.76 10.29 -39.10 -0.40 -2.16 16 23 C 0.09 1.48 7.19 -83.99 -0.60 0.88 16 24 N -0.56 -9.10 6.04 -6.54 -0.04 -9.14 16 25 H 0.43 7.02 8.96 -40.82 -0.37 6.65 16 26 C 0.11 1.79 6.60 -81.22 -0.54 1.25 16 27 C -0.22 -4.50 9.96 -26.69 -0.27 -4.77 16 28 C -0.16 -3.58 9.42 -26.69 -0.25 -3.83 16 29 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.08 1.78 7.92 -51.93 -0.41 1.37 16 31 H 0.00 -0.02 7.90 -51.93 -0.41 -0.43 16 32 H 0.34 5.85 8.41 -39.29 -0.33 5.52 16 33 H 0.07 0.86 7.92 -51.93 -0.41 0.45 16 34 H 0.07 0.87 7.95 -51.93 -0.41 0.46 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.73 8.11 -51.93 -0.42 0.31 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.11 1.05 8.06 -52.48 -0.42 0.63 16 41 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 45 H 0.08 1.98 8.14 -51.93 -0.42 1.56 16 46 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 373.42 15.07 5.63 5.63 Total: -1.00 -27.66 373.42 -12.60 -40.26 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -7.36 Total: 12.80 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: -5.86 Total: -29.26 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.02 Total: -45.26 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -27.66 -12.60 -40.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344124543.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.473 kcal (2) G-P(sol) polarization free energy of solvation -27.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds