Wall clock time and date at job start Tue Mar 31 2020 10:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35351 * 117.00111 * 2 1 4 4 C 1.38998 * 126.40743 * 92.26292 * 3 2 1 5 5 C 1.46917 * 126.49505 * 0.02562 * 4 3 2 6 6 O 1.21678 * 119.99835 * 90.00286 * 5 4 3 7 7 N 1.34771 * 120.00440 * 269.99561 * 5 4 3 8 8 C 1.46500 * 120.00329 * 179.97438 * 7 5 4 9 9 H 1.08996 * 109.46983 * 35.00547 * 8 7 5 10 10 C 1.53004 * 109.47517 * 275.00565 * 8 7 5 11 11 C 1.53000 * 109.47110 * 155.00357 * 8 7 5 12 12 N 1.46500 * 109.47300 * 305.00342 * 11 8 7 13 13 C 1.46498 * 119.99976 * 270.00105 * 12 11 8 14 14 C 1.36934 * 119.99921 * 89.99684 * 12 11 8 15 15 H 1.08001 * 119.99900 * 20.39195 * 14 12 11 16 16 C 1.38812 * 119.99886 * 200.38538 * 14 12 11 17 17 N 1.31621 * 120.00028 * 15.71363 * 16 14 12 18 18 Si 1.86801 * 119.99852 * 195.71365 * 16 14 12 19 19 H 1.48494 * 109.47582 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47265 * 120.00343 * 18 16 14 21 21 H 1.48509 * 109.46950 * 239.99900 * 18 16 14 22 22 C 1.41463 * 107.00567 * 180.02562 * 4 3 2 23 23 C 1.50707 * 125.92863 * 179.97438 * 22 4 3 24 24 N 1.30307 * 108.13727 * 359.97438 * 22 4 3 25 25 N 1.34665 * 126.40649 * 271.95766 * 3 2 1 26 26 C 1.46498 * 125.73901 * 359.97171 * 25 3 2 27 27 H 1.09007 * 109.46777 * 184.71809 * 1 2 3 28 28 H 1.08996 * 109.47094 * 304.71571 * 1 2 3 29 29 H 1.08996 * 109.46991 * 64.72181 * 1 2 3 30 30 H 0.97000 * 120.00062 * 0.02562 * 7 5 4 31 31 H 1.08997 * 109.46980 * 59.99716 * 10 8 7 32 32 H 1.08997 * 109.47234 * 180.02562 * 10 8 7 33 33 H 1.08996 * 109.46980 * 299.99984 * 10 8 7 34 34 H 1.09004 * 109.46930 * 65.00464 * 11 8 7 35 35 H 1.09005 * 109.47253 * 185.00212 * 11 8 7 36 36 H 1.08994 * 109.47403 * 95.14021 * 13 12 11 37 37 H 1.09002 * 109.47481 * 215.14466 * 13 12 11 38 38 H 1.09007 * 109.47203 * 335.14561 * 13 12 11 39 39 H 0.96998 * 119.99697 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.47171 * 89.99847 * 23 22 4 41 41 H 1.09000 * 109.47060 * 209.99450 * 23 22 4 42 42 H 1.09001 * 109.46999 * 329.99612 * 23 22 4 43 43 H 1.09004 * 109.47125 * 94.30106 * 26 25 3 44 44 H 1.08997 * 109.47295 * 214.29912 * 26 25 3 45 45 H 1.09006 * 109.47173 * 334.30072 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 6 2.4574 1.9210 1.1178 5 6 2.3111 1.5107 2.5209 6 8 3.1889 0.8632 3.0601 7 7 1.2048 1.8517 3.2110 8 6 1.0588 1.4421 4.6100 9 1 2.0339 1.4576 5.0967 10 6 0.4816 0.0263 4.6694 11 6 0.1148 2.4083 5.3284 12 7 0.6056 3.7794 5.1693 13 6 1.5346 4.3435 6.1516 14 6 0.1960 4.5338 4.1024 15 1 -0.7080 4.2731 3.5721 16 6 0.9425 5.6337 3.7026 17 7 2.1797 5.7790 4.1277 18 14 0.1914 6.9075 2.5614 19 1 -1.2024 6.5158 2.2312 20 1 0.1869 8.2321 3.2326 21 1 0.9924 6.9877 1.3135 22 6 3.0461 3.1185 0.6483 23 6 3.6383 4.2079 1.5049 24 7 2.9874 3.1162 -0.6535 25 7 2.3733 1.9349 -1.0832 26 6 2.1275 1.5561 -2.4768 27 1 -0.3633 -1.0243 0.0845 28 1 -0.3633 0.5852 0.8447 29 1 -0.3633 0.4388 -0.9292 30 1 0.5049 2.3677 2.7812 31 1 1.1541 -0.6620 4.1576 32 1 0.3725 -0.2782 5.7103 33 1 -0.4935 0.0108 4.1826 34 1 -0.8837 2.3276 4.8986 35 1 0.0754 2.1571 6.3884 36 1 2.5580 4.2156 5.7990 37 1 1.3253 5.4052 6.2819 38 1 1.4119 3.8292 7.1048 39 1 2.7015 6.5473 3.8481 40 1 4.6962 4.0048 1.6711 41 1 3.5275 5.1676 1.0002 42 1 3.1194 4.2392 2.4630 43 1 1.1863 1.9925 -2.8114 44 1 2.9410 1.9237 -3.1022 45 1 2.0721 0.4701 -2.5538 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754326805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:18:06 Heat of formation + Delta-G solvation = 33.091442 kcal Electronic energy + Delta-G solvation = -27982.286928 eV Core-core repulsion = 24231.439090 eV Total energy + Delta-G solvation = -3750.847838 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.26536 -38.66443 -38.09528 -36.17419 -33.89747 -33.66977 -31.32338 -30.37076 -29.55089 -28.82732 -27.17388 -26.15115 -25.62268 -25.46036 -22.58901 -21.46388 -20.37588 -19.82938 -19.40769 -17.73488 -16.78596 -16.37169 -16.25972 -15.79014 -15.40420 -14.84998 -14.68641 -14.41769 -13.85627 -13.51958 -13.41813 -13.18708 -13.05762 -12.85334 -12.78048 -12.50922 -12.17671 -12.12455 -11.77068 -11.66212 -11.54236 -11.36671 -11.26178 -11.03703 -10.80650 -10.69771 -10.38476 -10.23058 -10.03641 -10.01151 -9.80909 -9.20090 -8.90992 -8.52957 -8.23126 -8.16293 -6.77872 -5.73319 -3.16964 1.59264 2.34529 2.79623 3.34183 3.35967 3.42933 3.45666 3.57177 4.09731 4.47959 4.62829 4.98110 5.04982 5.12835 5.17600 5.29308 5.35605 5.39125 5.48950 5.56072 5.65928 5.75282 5.83895 5.98607 6.04568 6.19644 6.23220 6.28575 6.30522 6.45249 6.48567 6.57806 6.64659 6.76833 6.92716 7.18223 7.37280 7.39341 7.47996 7.71746 7.80300 7.88472 8.35565 8.42244 9.07908 9.21128 9.85154 10.34668 11.29965 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.011793 B = 0.006815 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.676150 B = 4107.674177 C = 5368.633068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.305 6.305 3 C 0.275 3.725 4 C -0.266 4.266 5 C 0.604 3.396 6 O -0.554 6.554 7 N -0.680 5.680 8 C 0.117 3.883 9 H 0.078 0.922 10 C -0.159 4.159 11 C 0.143 3.857 12 N -0.597 5.597 13 C 0.163 3.837 14 C -0.252 4.252 15 H 0.064 0.936 16 C 0.012 3.988 17 N -0.893 5.893 18 Si 0.886 3.114 19 H -0.281 1.281 20 H -0.291 1.291 21 H -0.288 1.288 22 C 0.140 3.860 23 C -0.088 4.088 24 N -0.288 5.288 25 N -0.376 5.376 26 C 0.100 3.900 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.402 0.598 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.052 0.948 36 H 0.031 0.969 37 H 0.042 0.958 38 H -0.004 1.004 39 H 0.252 0.748 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.123 0.877 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.377 -9.337 -8.007 13.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.215 6.215 3 C 0.105 3.895 4 C -0.281 4.281 5 C 0.389 3.611 6 O -0.432 6.432 7 N -0.329 5.329 8 C 0.009 3.991 9 H 0.096 0.904 10 C -0.218 4.218 11 C 0.014 3.986 12 N -0.319 5.319 13 C 0.018 3.982 14 C -0.382 4.382 15 H 0.082 0.918 16 C -0.187 4.187 17 N -0.537 5.537 18 Si 0.717 3.283 19 H -0.207 1.207 20 H -0.217 1.217 21 H -0.215 1.215 22 C -0.026 4.026 23 C -0.147 4.147 24 N -0.113 5.113 25 N -0.166 5.166 26 C -0.042 4.042 27 H 0.121 0.879 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.237 0.763 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.049 0.951 37 H 0.061 0.939 38 H 0.015 0.985 39 H 0.063 0.937 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.141 0.859 43 H 0.091 0.909 44 H 0.109 0.891 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.369 -9.296 -8.784 13.226 hybrid contribution -1.020 0.649 -0.526 1.318 sum -4.389 -8.647 -9.310 13.443 Atomic orbital electron populations 1.23190 0.77620 1.04097 1.01474 1.86014 1.20918 1.21368 1.93189 1.19106 0.98150 0.85728 0.86552 1.20009 1.16273 0.98407 0.93453 1.16890 0.81825 0.78473 0.83953 1.90721 1.41301 1.40775 1.70424 1.45710 1.20489 1.54456 1.12212 1.21837 1.01591 0.93097 0.82528 0.90426 1.22156 1.00518 0.97852 1.01307 1.21175 0.95136 0.85075 0.97183 1.43913 1.53585 1.08030 1.26418 1.20793 0.93718 0.96514 0.87126 1.19064 1.03833 1.07447 1.07814 0.91798 1.24820 0.95095 0.99960 0.98846 1.70071 1.06896 1.29446 1.47326 0.86476 0.78677 0.82447 0.80726 1.20678 1.21733 1.21501 1.22412 0.95131 0.94420 0.90608 1.20582 1.00727 0.93161 1.00220 1.77159 1.20965 1.00216 1.13003 1.48666 1.47227 1.14700 1.05971 1.21836 1.02940 1.01383 0.78017 0.87871 0.92201 0.93343 0.76265 0.92878 0.92307 0.93231 0.93505 0.92989 0.95097 0.93925 0.98509 0.93747 0.90902 0.91206 0.85879 0.90858 0.89119 0.89413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.13 101.05 1.12 1.46 16 2 O -0.31 -4.60 10.37 -17.74 -0.18 -4.79 16 3 C 0.28 4.79 7.02 -16.03 -0.11 4.68 16 4 C -0.27 -5.37 5.89 -104.88 -0.62 -5.99 16 5 C 0.60 13.01 7.30 -12.75 -0.09 12.91 16 6 O -0.55 -13.59 16.77 5.21 0.09 -13.51 16 7 N -0.68 -13.38 4.48 -55.04 -0.25 -13.63 16 8 C 0.12 2.18 2.88 -67.93 -0.20 1.99 16 9 H 0.08 1.67 7.58 -51.93 -0.39 1.28 16 10 C -0.16 -2.41 9.48 37.16 0.35 -2.06 16 11 C 0.14 2.66 5.36 -4.04 -0.02 2.64 16 12 N -0.60 -13.62 2.82 -181.12 -0.51 -14.13 16 13 C 0.16 3.80 9.02 59.85 0.54 4.34 16 14 C -0.25 -6.15 8.02 -15.06 -0.12 -6.27 16 15 H 0.06 1.54 7.86 -52.49 -0.41 1.13 16 16 C 0.01 0.30 5.00 -17.43 -0.09 0.21 16 17 N -0.89 -23.30 9.49 55.49 0.53 -22.77 16 18 Si 0.89 20.57 29.58 -169.99 -5.03 15.55 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 C 0.14 2.85 7.26 -82.01 -0.60 2.26 16 23 C -0.09 -1.81 10.28 36.01 0.37 -1.44 16 24 N -0.29 -5.45 12.47 33.91 0.42 -5.03 16 25 N -0.38 -6.05 3.99 -67.67 -0.27 -6.32 16 26 C 0.10 1.03 11.41 59.85 0.68 1.71 16 27 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.40 7.89 7.38 -40.82 -0.30 7.59 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.83 8.03 -51.93 -0.42 0.41 16 35 H 0.05 0.89 7.86 -51.93 -0.41 0.48 16 36 H 0.03 0.79 7.39 -51.93 -0.38 0.41 16 37 H 0.04 1.06 7.24 -51.93 -0.38 0.69 16 38 H 0.00 -0.08 7.84 -51.93 -0.41 -0.48 16 39 H 0.25 6.52 8.31 -40.82 -0.34 6.18 16 40 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.12 2.90 6.69 -51.93 -0.35 2.56 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.09 0.74 8.03 -51.93 -0.42 0.33 16 LS Contribution 376.98 15.07 5.68 5.68 Total: -1.00 -31.15 376.98 -5.52 -36.67 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -7.23 Total: 5.82 kcal Atomic # 6 Polarization: 15.23 SS G_CDS: 1.23 Total: 16.46 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: -0.08 Total: -61.88 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.10 Total: -18.29 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.15 -5.52 -36.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754326805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.760 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds