Wall clock time and date at job start Tue Mar 31 2020 10:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35346 * 116.99622 * 2 1 4 4 C 1.38999 * 126.40319 * 265.51505 * 3 2 1 5 5 C 1.46923 * 126.49809 * 0.04376 * 4 3 2 6 6 O 1.21669 * 120.00471 * 89.99452 * 5 4 3 7 7 N 1.34786 * 119.99796 * 270.00158 * 5 4 3 8 8 C 1.46495 * 119.99585 * 180.02562 * 7 5 4 9 9 H 1.08999 * 109.47551 * 324.99022 * 8 7 5 10 10 C 1.52997 * 109.47442 * 84.99714 * 8 7 5 11 11 C 1.53011 * 109.46723 * 204.99645 * 8 7 5 12 12 N 1.46493 * 109.46940 * 54.99725 * 11 8 7 13 13 C 1.46500 * 120.00042 * 269.99622 * 12 11 8 14 14 C 1.36938 * 120.00341 * 90.00668 * 12 11 8 15 15 H 1.08002 * 119.99393 * 23.95685 * 14 12 11 16 16 C 1.38814 * 120.00271 * 203.96685 * 14 12 11 17 17 N 1.31615 * 119.99823 * 10.25383 * 16 14 12 18 18 Si 1.86801 * 119.99904 * 190.26131 * 16 14 12 19 19 H 1.48498 * 109.47118 * 59.99543 * 18 16 14 20 20 H 1.48503 * 109.46886 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47072 * 299.99400 * 18 16 14 22 22 C 1.41462 * 107.00596 * 180.29998 * 4 3 2 23 23 C 1.50700 * 125.92897 * 179.73747 * 22 4 3 24 24 N 1.30312 * 108.13841 * 359.55732 * 22 4 3 25 25 N 1.34660 * 126.40973 * 85.56673 * 3 2 1 26 26 C 1.46495 * 125.73969 * 359.95622 * 25 3 2 27 27 H 1.09002 * 109.46617 * 184.98989 * 1 2 3 28 28 H 1.08994 * 109.47131 * 304.98538 * 1 2 3 29 29 H 1.08996 * 109.46981 * 64.99264 * 1 2 3 30 30 H 0.96999 * 119.99587 * 359.97438 * 7 5 4 31 31 H 1.08998 * 109.47042 * 179.97438 * 10 8 7 32 32 H 1.08997 * 109.47168 * 299.99596 * 10 8 7 33 33 H 1.09004 * 109.47235 * 59.99906 * 10 8 7 34 34 H 1.08993 * 109.47001 * 175.00153 * 11 8 7 35 35 H 1.08996 * 109.46752 * 295.00017 * 11 8 7 36 36 H 1.09009 * 109.46639 * 95.42915 * 13 12 11 37 37 H 1.09004 * 109.47261 * 215.42347 * 13 12 11 38 38 H 1.09001 * 109.47477 * 335.43249 * 13 12 11 39 39 H 0.97003 * 119.99859 * 180.02562 * 17 16 14 40 40 H 1.08994 * 109.47430 * 90.00352 * 23 22 4 41 41 H 1.09001 * 109.47325 * 210.00291 * 23 22 4 42 42 H 1.09003 * 109.47416 * 329.99915 * 23 22 4 43 43 H 1.08996 * 109.47161 * 94.89995 * 26 25 3 44 44 H 1.09003 * 109.47126 * 214.90247 * 26 25 3 45 45 H 1.08996 * 109.47347 * 334.90172 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0434 1.2060 0.0000 4 6 2.4958 1.9013 -1.1153 5 6 2.3968 1.4670 -2.5154 6 8 1.4200 1.7644 -3.1771 7 7 3.3880 0.7388 -3.0668 8 6 3.2894 0.3062 -4.4629 9 1 2.2494 0.0846 -4.7022 10 6 3.7973 1.4211 -5.3794 11 6 4.1388 -0.9498 -4.6688 12 7 3.7307 -1.9780 -3.7084 13 6 4.3780 -2.0529 -2.3963 14 6 2.7444 -2.8692 -4.0371 15 1 2.5360 -3.0855 -5.0745 16 6 2.0124 -3.4945 -3.0371 17 7 2.1215 -3.0884 -1.7899 18 14 0.8726 -4.9124 -3.4614 19 1 1.6591 -6.0138 -4.0725 20 1 0.2117 -5.4031 -2.2254 21 1 -0.1587 -4.4475 -4.4236 22 6 3.0751 3.1037 -0.6464 23 6 3.7046 4.1739 -1.5005 24 7 2.9663 3.1270 0.6520 25 7 2.3316 1.9562 1.0805 26 6 2.0309 1.6054 2.4707 27 1 -0.3632 -1.0238 0.0894 28 1 -0.3633 0.5892 0.8419 29 1 -0.3633 0.4344 -0.9313 30 1 4.1668 0.5019 -2.5393 31 1 3.7243 1.0990 -6.4182 32 1 3.1922 2.3158 -5.2328 33 1 4.8374 1.6426 -5.1402 34 1 3.9960 -1.3227 -5.6829 35 1 5.1901 -0.7064 -4.5158 36 1 3.7793 -1.5104 -1.6644 37 1 4.4648 -3.0962 -2.0930 38 1 5.3711 -1.6076 -2.4550 39 1 1.6102 -3.5255 -1.0910 40 1 2.9464 4.9022 -1.7880 41 1 4.4921 4.6729 -0.9358 42 1 4.1309 3.7206 -2.3955 43 1 2.9017 1.1299 2.9219 44 1 1.7809 2.5086 3.0274 45 1 1.1864 0.9168 2.4972 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754326806.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:18:09 Heat of formation + Delta-G solvation = 34.550534 kcal Electronic energy + Delta-G solvation = -27806.433404 eV Core-core repulsion = 24055.648837 eV Total energy + Delta-G solvation = -3750.784567 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.30889 -38.71073 -37.82760 -36.14099 -33.84205 -33.80135 -31.22148 -30.38923 -29.76148 -28.99659 -26.93344 -26.06367 -25.66219 -25.46454 -22.64385 -21.32295 -20.28596 -19.96746 -19.46607 -17.65841 -16.70131 -16.54179 -16.04539 -15.74330 -15.31598 -14.76481 -14.49460 -14.17586 -13.96602 -13.55818 -13.50351 -13.32020 -13.15114 -13.02280 -12.70688 -12.60487 -12.41587 -12.07879 -12.03922 -11.83501 -11.49375 -11.33257 -11.01606 -10.97699 -10.76317 -10.72392 -10.47031 -10.11414 -9.92170 -9.86810 -9.76426 -9.26224 -9.03725 -8.49358 -8.28761 -8.19980 -6.62085 -5.60168 -3.07982 1.64813 2.30806 2.56756 3.28302 3.43232 3.46740 3.49146 3.80366 4.09817 4.52317 4.57850 4.95001 5.10985 5.20435 5.22278 5.37263 5.42415 5.53680 5.57078 5.60350 5.65677 5.79118 5.80910 5.86626 5.90900 5.96253 6.03553 6.10544 6.20185 6.32558 6.35442 6.56681 6.64049 6.66175 6.76123 6.99965 7.33705 7.43789 7.65130 7.74052 7.82911 7.89461 8.32246 8.49211 9.00965 9.33004 9.95576 10.44928 11.42481 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.012709 B = 0.006055 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.548085 B = 4623.422386 C = 6013.749977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.279 6.279 3 C 0.303 3.697 4 C -0.282 4.282 5 C 0.607 3.393 6 O -0.553 6.553 7 N -0.686 5.686 8 C 0.116 3.884 9 H 0.084 0.916 10 C -0.159 4.159 11 C 0.143 3.857 12 N -0.595 5.595 13 C 0.163 3.837 14 C -0.257 4.257 15 H 0.065 0.935 16 C 0.008 3.992 17 N -0.891 5.891 18 Si 0.898 3.102 19 H -0.286 1.286 20 H -0.293 1.293 21 H -0.285 1.285 22 C 0.116 3.884 23 C -0.073 4.073 24 N -0.290 5.290 25 N -0.375 5.375 26 C 0.100 3.900 27 H 0.106 0.894 28 H 0.038 0.962 29 H 0.058 0.942 30 H 0.395 0.605 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.040 0.960 36 H 0.038 0.962 37 H 0.039 0.961 38 H -0.009 1.009 39 H 0.249 0.751 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.502 11.203 5.536 12.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.187 6.187 3 C 0.132 3.868 4 C -0.298 4.298 5 C 0.392 3.608 6 O -0.431 6.431 7 N -0.334 5.334 8 C 0.009 3.991 9 H 0.102 0.898 10 C -0.218 4.218 11 C 0.015 3.985 12 N -0.317 5.317 13 C 0.018 3.982 14 C -0.387 4.387 15 H 0.082 0.918 16 C -0.191 4.191 17 N -0.535 5.535 18 Si 0.728 3.272 19 H -0.213 1.213 20 H -0.219 1.219 21 H -0.211 1.211 22 C -0.051 4.051 23 C -0.132 4.132 24 N -0.115 5.115 25 N -0.165 5.165 26 C -0.041 4.041 27 H 0.124 0.876 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.229 0.771 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.009 0.991 39 H 0.059 0.941 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.107 0.893 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.981 11.630 6.391 13.417 hybrid contribution -0.855 -1.459 -0.280 1.714 sum 1.126 10.172 6.110 11.919 Atomic orbital electron populations 1.23090 0.77405 1.04032 1.00748 1.86280 1.20691 1.19142 1.92626 1.19418 0.96434 0.85011 0.85952 1.19988 1.17611 0.98483 0.93696 1.16865 0.82347 0.77392 0.84236 1.90723 1.31607 1.57502 1.63302 1.45764 1.21820 1.52459 1.13364 1.21873 1.02991 0.94541 0.79709 0.89752 1.22159 1.00530 0.99492 0.99627 1.21181 0.94962 0.87536 0.94808 1.43828 1.41941 1.32124 1.13853 1.20857 0.90448 0.99935 0.86967 1.19059 1.10739 1.16791 0.92138 0.91771 1.25023 0.98042 1.00008 0.96024 1.70074 1.43136 1.41048 0.99243 0.86455 0.80994 0.82810 0.76904 1.21287 1.21862 1.21136 1.22095 0.97006 0.94768 0.91185 1.20225 1.00280 0.95067 0.97606 1.77009 1.20287 1.01680 1.12523 1.48732 1.46632 1.14503 1.06621 1.21869 1.02394 1.02061 0.77791 0.87613 0.94303 0.92318 0.77067 0.92201 0.92941 0.93210 0.92463 0.94174 0.94373 0.94224 0.99090 0.94091 0.90114 0.90474 0.90239 0.90245 0.89335 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 11.13 101.05 1.12 1.81 16 2 O -0.28 -5.46 10.36 -17.73 -0.18 -5.65 16 3 C 0.30 5.59 7.02 -16.03 -0.11 5.47 16 4 C -0.28 -5.33 5.89 -104.87 -0.62 -5.95 16 5 C 0.61 12.69 7.30 -12.74 -0.09 12.59 16 6 O -0.55 -13.20 16.77 5.22 0.09 -13.11 16 7 N -0.69 -13.44 4.42 -55.03 -0.24 -13.68 16 8 C 0.12 2.26 2.88 -67.93 -0.20 2.06 16 9 H 0.08 1.97 7.58 -51.93 -0.39 1.58 16 10 C -0.16 -2.45 9.48 37.16 0.35 -2.10 16 11 C 0.14 2.85 5.33 -4.04 -0.02 2.83 16 12 N -0.60 -14.51 2.78 -181.11 -0.50 -15.01 16 13 C 0.16 3.89 7.58 59.85 0.45 4.34 16 14 C -0.26 -7.00 9.66 -15.06 -0.15 -7.15 16 15 H 0.06 1.73 7.84 -52.49 -0.41 1.32 16 16 C 0.01 0.23 5.16 -17.43 -0.09 0.14 16 17 N -0.89 -25.07 10.62 55.49 0.59 -24.49 16 18 Si 0.90 21.91 29.57 -169.99 -5.03 16.89 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 22 C 0.12 1.87 7.26 -82.01 -0.60 1.27 16 23 C -0.07 -0.89 10.28 36.01 0.37 -0.52 16 24 N -0.29 -4.65 12.48 33.91 0.42 -4.22 16 25 N -0.37 -5.85 3.99 -67.68 -0.27 -6.12 16 26 C 0.10 1.07 11.41 59.84 0.68 1.75 16 27 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 28 H 0.04 0.49 7.73 -51.93 -0.40 0.09 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.40 7.48 7.18 -40.82 -0.29 7.19 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 1.10 8.03 -51.93 -0.42 0.69 16 35 H 0.04 0.71 7.86 -51.93 -0.41 0.30 16 36 H 0.04 0.99 6.90 -51.92 -0.36 0.63 16 37 H 0.04 1.03 7.35 -51.93 -0.38 0.65 16 38 H -0.01 -0.20 7.83 -51.93 -0.41 -0.60 16 39 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.08 0.94 8.01 -51.93 -0.42 0.53 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.09 0.82 7.60 -51.93 -0.39 0.43 16 LS Contribution 378.19 15.07 5.70 5.70 Total: -1.00 -33.71 378.19 -5.54 -39.24 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -7.22 Total: 3.89 kcal Atomic # 6 Polarization: 15.45 SS G_CDS: 1.11 Total: 16.56 kcal Atomic # 7 Polarization: -63.52 SS G_CDS: 0.00 Total: -63.52 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.10 Total: -18.76 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.71 -5.54 -39.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754326806.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.794 kcal (2) G-P(sol) polarization free energy of solvation -33.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds