Wall clock time and date at job start Tue Mar 31 2020 10:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46898 * 109.47184 * 2 1 4 4 C 1.46898 * 111.00385 * 299.91017 * 3 2 1 5 5 C 1.53008 * 109.46807 * 288.37605 * 4 3 2 6 6 C 1.46908 * 110.99742 * 63.86349 * 3 2 1 7 7 C 1.50699 * 109.47052 * 66.04573 * 6 3 2 8 8 C 1.38386 * 119.84952 * 90.00486 * 7 6 3 9 9 C 1.37937 * 120.14129 * 180.25352 * 8 7 6 10 10 C 1.39613 * 119.85307 * 359.50780 * 9 8 7 11 11 C 1.47960 * 120.14600 * 180.20808 * 10 9 8 12 12 C 1.39892 * 119.45212 * 0.25527 * 11 10 9 13 13 C 1.36610 * 119.46871 * 179.97438 * 12 11 10 14 14 C 1.41302 * 118.41593 * 359.97438 * 13 12 11 15 15 C 1.41048 * 120.55462 * 180.02562 * 14 13 12 16 16 H 1.08009 * 119.99619 * 206.90161 * 15 14 13 17 17 C 1.40023 * 120.00227 * 26.89574 * 15 14 13 18 18 N 1.30780 * 120.00052 * 12.12573 * 17 15 14 19 19 Si 1.86797 * 119.99926 * 192.12366 * 17 15 14 20 20 H 1.48503 * 109.47134 * 90.00099 * 19 17 15 21 21 H 1.48509 * 109.47153 * 210.00077 * 19 17 15 22 22 H 1.48497 * 109.47376 * 330.00300 * 19 17 15 23 23 C 1.40953 * 118.88961 * 0.02562 * 14 13 12 24 24 N 1.31267 * 120.40162 * 359.72130 * 23 14 13 25 25 C 1.39613 * 119.70762 * 0.46760 * 10 9 8 26 26 C 1.37929 * 119.85463 * 359.76308 * 25 10 9 27 27 H 1.08997 * 109.47198 * 186.23938 * 1 2 3 28 28 H 1.08999 * 109.47558 * 306.24069 * 1 2 3 29 29 H 1.09005 * 109.46755 * 66.24190 * 1 2 3 30 30 H 1.09000 * 109.47516 * 240.00121 * 2 1 3 31 31 H 1.09002 * 109.47075 * 120.00210 * 2 1 3 32 32 H 1.08999 * 109.47148 * 48.36967 * 4 3 2 33 33 H 1.08992 * 109.47407 * 168.37576 * 4 3 2 34 34 H 1.09003 * 109.46685 * 186.06703 * 5 4 3 35 35 H 1.08998 * 109.46680 * 306.06632 * 5 4 3 36 36 H 1.09001 * 109.46780 * 66.06300 * 5 4 3 37 37 H 1.09000 * 109.46805 * 306.04159 * 6 3 2 38 38 H 1.09005 * 109.46688 * 186.04859 * 6 3 2 39 39 H 1.07993 * 119.93538 * 359.96724 * 8 7 6 40 40 H 1.07998 * 120.07489 * 179.74205 * 9 8 7 41 41 H 1.08002 * 120.26538 * 359.97438 * 12 11 10 42 42 H 1.07998 * 120.79314 * 180.02562 * 13 12 11 43 43 H 0.96999 * 120.00236 * 179.97438 * 18 17 15 44 44 H 1.07996 * 119.80085 * 179.97438 * 23 14 13 45 45 H 1.07998 * 120.07015 * 179.79365 * 25 10 9 46 46 H 1.08001 * 119.93094 * 179.97438 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5504 2.1093 -1.1887 5 6 2.2882 1.5920 -2.4253 6 6 1.6255 2.0827 1.2313 7 6 2.3244 1.4553 2.4098 8 6 3.5608 1.9305 2.8104 9 6 4.2082 1.3573 3.8850 10 6 3.6087 0.3022 4.5754 11 6 4.2953 -0.3144 5.7319 12 6 5.5452 0.1721 6.1293 13 6 6.1792 -0.3966 7.1974 14 6 5.5415 -1.4650 7.8671 15 6 6.1552 -2.0849 8.9755 16 1 5.9284 -3.1139 9.2128 17 6 7.0584 -1.3663 9.7682 18 7 7.1573 -0.0691 9.6347 19 14 8.1222 -2.2605 11.0164 20 1 9.3967 -2.6731 10.3755 21 1 8.4124 -1.3560 12.1580 22 1 7.4035 -3.4633 11.5082 23 6 4.2819 -1.9010 7.4088 24 7 3.7111 -1.3184 6.3803 25 6 2.3610 -0.1721 4.1663 26 6 1.7265 0.4069 3.0871 27 1 -0.3633 -1.0215 0.1117 28 1 -0.3634 0.6075 0.8288 29 1 -0.3633 0.4140 -0.9406 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 0.4792 1.9502 -1.3118 33 1 1.7480 3.1742 -1.0668 34 1 2.0204 2.2005 -3.2891 35 1 3.3637 1.6517 -2.2581 36 1 2.0061 0.5554 -2.6095 37 1 0.5465 2.0035 1.3642 38 1 1.9065 3.1334 1.1593 39 1 4.0220 2.7489 2.2776 40 1 5.1750 1.7263 4.1941 41 1 6.0053 0.9909 5.5960 42 1 7.1444 -0.0376 7.5228 43 1 7.7827 0.4288 10.1841 44 1 3.7815 -2.7167 7.9094 45 1 1.8934 -0.9901 4.6940 46 1 0.7614 0.0407 2.7693 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241574416.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:00:11 Heat of formation + Delta-G solvation = 44.109276 kcal Electronic energy + Delta-G solvation = -24291.171485 eV Core-core repulsion = 20951.650679 eV Total energy + Delta-G solvation = -3339.520806 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.49480 -38.50180 -37.33687 -34.31560 -32.48639 -31.40741 -30.97217 -30.35505 -29.92039 -28.55754 -26.12212 -24.66688 -23.78002 -22.68963 -21.85274 -20.90325 -20.30707 -19.69779 -17.51442 -16.45056 -16.21133 -16.06143 -15.50931 -15.14446 -14.85907 -14.39838 -13.99613 -13.71358 -13.55813 -13.34020 -13.26018 -12.85220 -12.82152 -12.58318 -12.36545 -12.14727 -11.97660 -11.86015 -11.70845 -11.54994 -11.52769 -11.33178 -11.23027 -11.09820 -10.76483 -10.70392 -10.45506 -10.40274 -9.89921 -9.57440 -8.64199 -8.39914 -8.34642 -8.27852 -8.10650 -7.24461 -6.95852 -4.58719 1.53948 1.98903 2.65085 2.92251 2.95084 2.97769 3.13321 3.73536 3.89224 4.32641 4.66983 4.80231 4.87175 5.03896 5.10503 5.16164 5.20281 5.32549 5.37882 5.40417 5.48832 5.51058 5.56223 5.61406 5.67356 5.78198 5.84475 5.94586 5.96166 6.00500 6.07134 6.15064 6.22555 6.44882 6.52402 6.62530 6.71558 6.77986 6.87507 6.97064 6.98795 7.05812 7.13370 7.16176 7.33344 7.50307 7.69916 7.76643 7.87676 8.30524 8.50756 8.59267 9.52271 9.90349 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.036264 B = 0.002353 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.928255 B =11894.568376 C =12238.567692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.043 3.957 3 N -0.530 5.530 4 C 0.044 3.956 5 C -0.146 4.146 6 C 0.097 3.903 7 C -0.112 4.112 8 C -0.094 4.094 9 C -0.135 4.135 10 C 0.022 3.978 11 C -0.005 4.005 12 C -0.123 4.123 13 C -0.140 4.140 14 C 0.068 3.932 15 C -0.435 4.435 16 H 0.086 0.914 17 C 0.070 3.930 18 N -0.783 5.783 19 Si 0.919 3.081 20 H -0.265 1.265 21 H -0.275 1.275 22 H -0.259 1.259 23 C -0.015 4.015 24 N -0.450 5.450 25 C -0.114 4.114 26 C -0.113 4.113 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.037 0.963 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.051 0.949 37 H 0.041 0.959 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.119 0.881 41 H 0.102 0.898 42 H 0.129 0.871 43 H 0.286 0.714 44 H 0.129 0.871 45 H 0.126 0.874 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.004 4.031 -14.680 16.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.085 4.085 3 N -0.253 5.253 4 C -0.084 4.084 5 C -0.204 4.204 6 C -0.030 4.030 7 C -0.113 4.113 8 C -0.113 4.113 9 C -0.154 4.154 10 C 0.021 3.979 11 C -0.139 4.139 12 C -0.143 4.143 13 C -0.165 4.165 14 C 0.063 3.937 15 C -0.464 4.464 16 H 0.104 0.896 17 C -0.150 4.150 18 N -0.407 5.407 19 Si 0.742 3.258 20 H -0.190 1.190 21 H -0.200 1.200 22 H -0.183 1.183 23 C -0.180 4.180 24 N -0.157 5.157 25 C -0.133 4.133 26 C -0.131 4.131 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.055 0.945 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.094 0.906 39 H 0.131 0.869 40 H 0.137 0.863 41 H 0.120 0.880 42 H 0.147 0.853 43 H 0.097 0.903 44 H 0.147 0.853 45 H 0.144 0.856 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.166 3.978 -14.888 16.995 hybrid contribution 0.496 0.048 1.040 1.153 sum -6.670 4.026 -13.847 15.889 Atomic orbital electron populations 1.22435 0.98656 1.02421 1.01703 1.22231 0.92514 0.90373 1.03344 1.62298 1.59427 1.02299 1.01302 1.22138 0.97379 0.98154 0.90720 1.21757 1.01560 1.00805 0.96269 1.21005 0.96973 0.97315 0.87664 1.19458 0.96149 0.98475 0.97168 1.20708 0.94338 0.99742 0.96504 1.21178 1.00291 0.97320 0.96624 1.18706 0.93103 0.93220 0.92852 1.18845 0.95104 0.99987 0.99922 1.21341 0.95767 0.99480 0.97732 1.21393 1.00760 0.99488 0.94867 1.18639 0.91145 0.91838 0.92032 1.19674 1.19381 0.99322 1.08012 0.89572 1.26078 0.96062 0.94720 0.98159 1.69752 1.29290 1.07191 1.34457 0.86126 0.80195 0.80198 0.79247 1.19017 1.20016 1.18277 1.22495 0.94058 1.03593 0.97851 1.66930 1.35192 1.06878 1.06696 1.21203 0.95026 1.00446 0.96594 1.20853 0.99410 0.96529 0.96350 0.92061 0.92232 0.92728 0.90941 0.89676 0.94453 0.91213 0.92665 0.91753 0.92943 0.94052 0.90602 0.86869 0.86276 0.88005 0.85333 0.90269 0.85302 0.85566 0.87290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.79 9.12 37.16 0.34 -1.45 16 2 C 0.04 0.47 5.56 -3.83 -0.02 0.45 16 3 N -0.53 -5.92 4.66 -236.07 -1.10 -7.02 16 4 C 0.04 0.40 5.53 -3.82 -0.02 0.37 16 5 C -0.15 -1.20 9.83 37.16 0.37 -0.83 16 6 C 0.10 1.13 4.93 -4.97 -0.02 1.11 16 7 C -0.11 -1.62 4.90 -104.51 -0.51 -2.13 16 8 C -0.09 -1.46 9.68 -39.64 -0.38 -1.84 16 9 C -0.14 -2.41 9.42 -39.18 -0.37 -2.78 16 10 C 0.02 0.45 5.88 -104.89 -0.62 -0.16 16 11 C 0.00 -0.11 6.74 -82.75 -0.56 -0.67 16 12 C -0.12 -2.87 9.38 -39.55 -0.37 -3.24 16 13 C -0.14 -3.53 8.72 -39.01 -0.34 -3.87 16 14 C 0.07 1.75 5.58 -106.64 -0.59 1.16 16 15 C -0.43 -10.77 9.07 -37.85 -0.34 -11.12 16 16 H 0.09 2.01 7.88 -52.48 -0.41 1.60 16 17 C 0.07 1.63 5.26 -17.33 -0.09 1.54 16 18 N -0.78 -19.00 10.82 55.55 0.60 -18.40 16 19 Si 0.92 17.40 29.58 -169.99 -5.03 12.37 16 20 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 21 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 22 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 23 C -0.01 -0.37 10.97 -16.77 -0.18 -0.55 16 24 N -0.45 -11.01 9.39 -9.10 -0.09 -11.10 16 25 C -0.11 -2.11 9.57 -39.18 -0.38 -2.49 16 26 C -0.11 -1.74 7.88 -39.64 -0.31 -2.05 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.58 5.77 -51.93 -0.30 0.28 16 29 H 0.05 0.46 6.51 -51.93 -0.34 0.12 16 30 H 0.07 0.74 6.81 -51.93 -0.35 0.39 16 31 H 0.08 1.09 5.89 -51.93 -0.31 0.78 16 32 H 0.04 0.32 5.90 -51.93 -0.31 0.01 16 33 H 0.07 0.59 7.82 -51.93 -0.41 0.19 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.43 7.01 -51.93 -0.36 0.06 16 37 H 0.04 0.46 5.96 -51.93 -0.31 0.15 16 38 H 0.08 0.82 7.81 -51.93 -0.41 0.41 16 39 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 40 H 0.12 2.02 6.15 -52.49 -0.32 1.69 16 41 H 0.10 2.10 6.15 -52.49 -0.32 1.78 16 42 H 0.13 3.27 6.22 -52.49 -0.33 2.94 16 43 H 0.29 6.27 8.30 -40.82 -0.34 5.93 16 44 H 0.13 2.91 8.06 -52.49 -0.42 2.49 16 45 H 0.13 2.41 7.52 -52.49 -0.39 2.02 16 46 H 0.11 1.45 7.54 -52.49 -0.40 1.06 16 LS Contribution 363.53 15.07 5.48 5.48 Total: -1.00 -26.70 363.53 -11.06 -37.76 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -6.51 Total: 9.46 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: -4.41 Total: -28.55 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: -0.58 Total: -36.52 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -5.03 Total: 12.37 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -26.70 -11.06 -37.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241574416.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.867 kcal (2) G-P(sol) polarization free energy of solvation -26.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds