Wall clock time and date at job start Tue Mar 31 2020 09:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47152 * 2 1 4 4 C 1.53004 * 109.46990 * 240.00988 * 2 1 3 5 5 N 1.46501 * 109.46817 * 184.99862 * 4 2 1 6 6 C 1.46505 * 119.99863 * 269.99180 * 5 4 2 7 7 C 1.36937 * 120.00342 * 90.00228 * 5 4 2 8 8 H 1.08004 * 119.99682 * 22.32812 * 7 5 4 9 9 C 1.38810 * 120.00040 * 202.33656 * 7 5 4 10 10 N 1.31618 * 120.00135 * 11.36431 * 9 7 5 11 11 Si 1.86800 * 119.99932 * 191.35641 * 9 7 5 12 12 H 1.48508 * 109.46777 * 60.00465 * 11 9 7 13 13 H 1.48500 * 109.47250 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47718 * 300.00429 * 11 9 7 15 15 N 1.46499 * 109.47628 * 120.00799 * 2 1 3 16 16 C 1.34776 * 119.99688 * 275.00090 * 15 2 1 17 17 O 1.21497 * 120.00241 * 359.72570 * 16 15 2 18 18 C 1.48331 * 120.00076 * 179.97438 * 16 15 2 19 19 C 1.42265 * 126.94243 * 179.72404 * 18 16 15 20 20 C 1.35310 * 103.92399 * 179.97438 * 19 18 16 21 21 C 1.50706 * 126.66552 * 179.97438 * 20 19 18 22 22 N 1.46905 * 109.46759 * 90.00744 * 21 20 19 23 23 C 1.46898 * 110.99708 * 170.00145 * 22 21 20 24 24 C 1.46905 * 110.99843 * 293.94834 * 22 21 20 25 25 O 1.34012 * 106.66900 * 0.02562 * 20 19 18 26 26 N 1.20904 * 111.84695 * 359.72687 * 25 20 19 27 27 H 1.09002 * 109.47175 * 299.98899 * 1 2 3 28 28 H 1.09004 * 109.47407 * 59.99644 * 1 2 3 29 29 H 1.09005 * 109.47221 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46865 * 304.99754 * 4 2 1 31 31 H 1.09000 * 109.47357 * 64.99822 * 4 2 1 32 32 H 1.09004 * 109.46318 * 94.23090 * 6 5 4 33 33 H 1.08999 * 109.47388 * 214.22571 * 6 5 4 34 34 H 1.08997 * 109.47155 * 334.23468 * 6 5 4 35 35 H 0.96998 * 120.00141 * 180.02562 * 10 9 7 36 36 H 0.96998 * 120.00097 * 94.99306 * 15 2 1 37 37 H 1.08009 * 128.03838 * 359.97438 * 19 18 16 38 38 H 1.09000 * 109.46958 * 210.00048 * 21 20 19 39 39 H 1.08990 * 109.47467 * 330.00499 * 21 20 19 40 40 H 1.09002 * 109.47778 * 59.99753 * 23 22 21 41 41 H 1.09001 * 109.47294 * 179.97438 * 23 22 21 42 42 H 1.09007 * 109.47233 * 299.99373 * 23 22 21 43 43 H 1.08997 * 109.46596 * 60.00260 * 24 22 21 44 44 H 1.09000 * 109.47020 * 180.02562 * 24 22 21 45 45 H 1.08998 * 109.47128 * 300.01043 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 7 3.5000 -0.8261 -1.1907 6 6 4.3343 0.2344 -1.7614 7 6 4.0850 -1.9157 -0.6027 8 1 3.5338 -2.8398 -0.5091 9 6 5.3863 -1.8324 -0.1267 10 7 5.9794 -0.6611 -0.0339 11 14 6.2957 -3.3827 0.3822 12 1 6.3970 -4.3013 -0.7803 13 1 7.6589 -3.0258 0.8506 14 1 5.5544 -4.0537 1.4801 15 7 2.0184 -0.6907 1.1960 16 6 2.1472 -0.0185 2.3570 17 8 1.8629 1.1615 2.4106 18 6 2.6412 -0.7179 3.5682 19 6 2.8378 -0.1554 4.8600 20 6 3.2930 -1.1921 5.6008 21 6 3.6677 -1.1594 7.0602 22 7 2.4877 -1.4765 7.8758 23 6 2.8603 -1.6872 9.2810 24 6 1.4661 -0.4279 7.7537 25 8 3.3471 -2.2535 4.7844 26 7 2.9797 -1.9796 3.6655 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6053 -1.7196 -1.2954 31 1 1.7516 -0.1580 -2.1370 32 1 4.6022 0.9458 -0.9802 33 1 5.2403 -0.2024 -2.1813 34 1 3.7809 0.7488 -2.5471 35 1 6.8889 -0.6030 0.2983 36 1 2.2491 -1.6319 1.1524 37 1 2.6642 0.8628 5.1760 38 1 4.4495 -1.8945 7.2512 39 1 4.0322 -0.1656 7.3196 40 1 3.3237 -0.7822 9.6738 41 1 1.9682 -1.9199 9.8625 42 1 3.5654 -2.5157 9.3497 43 1 1.1577 -0.3408 6.7118 44 1 0.6038 -0.6875 8.3677 45 1 1.8791 0.5228 8.0910 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754313928.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:54:39 Heat of formation + Delta-G solvation = 61.301906 kcal Electronic energy + Delta-G solvation = -26742.287861 eV Core-core repulsion = 22992.663320 eV Total energy + Delta-G solvation = -3749.624541 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.79451 -39.07910 -37.83637 -36.32753 -34.00206 -33.67756 -32.36404 -31.20545 -29.95572 -27.89684 -27.48970 -26.17142 -25.58863 -24.58278 -22.77060 -22.27448 -21.55830 -20.07083 -19.47545 -17.59678 -17.43627 -16.79078 -16.30152 -15.64453 -15.54285 -15.44922 -15.00151 -14.81131 -14.31261 -13.79591 -13.68531 -13.39581 -13.27986 -13.04149 -12.84173 -12.70541 -12.24415 -12.14181 -12.00674 -11.93873 -11.85355 -11.40222 -11.29432 -11.15391 -10.79817 -10.67879 -10.41303 -10.26963 -10.08017 -10.04493 -9.80373 -9.60839 -9.42228 -8.71511 -8.53578 -8.34200 -6.76413 -5.71739 -3.18006 1.45684 1.90002 3.07221 3.40886 3.45036 3.46987 3.54447 3.71645 3.85133 4.35738 4.51000 4.65495 4.82367 4.87610 5.06550 5.15369 5.20841 5.30444 5.34051 5.35789 5.51527 5.55356 5.58018 5.61520 5.68849 5.71978 5.88761 5.97802 6.05024 6.16508 6.23891 6.44735 6.49954 6.56128 6.63317 6.75264 6.87195 7.18884 7.39928 7.73398 7.81325 8.11576 8.38768 8.40802 8.78990 9.23152 9.86605 10.35695 11.32498 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.013826 B = 0.004559 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.634519 B = 6140.796320 C = 7569.245300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.117 3.883 3 H 0.079 0.921 4 C 0.141 3.859 5 N -0.598 5.598 6 C 0.164 3.836 7 C -0.259 4.259 8 H 0.066 0.934 9 C 0.011 3.989 10 N -0.901 5.901 11 Si 0.894 3.106 12 H -0.284 1.284 13 H -0.292 1.292 14 H -0.278 1.278 15 N -0.668 5.668 16 C 0.598 3.402 17 O -0.548 6.548 18 C -0.014 4.014 19 C -0.176 4.176 20 C -0.037 4.037 21 C 0.136 3.864 22 N -0.545 5.545 23 C 0.026 3.974 24 C 0.016 3.984 25 O 0.130 5.870 26 N -0.317 5.317 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.027 0.973 33 H 0.045 0.955 34 H -0.004 1.004 35 H 0.252 0.748 36 H 0.411 0.589 37 H 0.174 0.826 38 H 0.102 0.898 39 H 0.072 0.928 40 H 0.029 0.971 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.857 0.062 14.143 16.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.009 3.991 3 H 0.097 0.903 4 C 0.013 3.987 5 N -0.321 5.321 6 C 0.020 3.980 7 C -0.389 4.389 8 H 0.084 0.916 9 C -0.188 4.188 10 N -0.545 5.545 11 Si 0.724 3.276 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.203 1.203 15 N -0.317 5.317 16 C 0.382 3.618 17 O -0.425 6.425 18 C -0.174 4.174 19 C -0.199 4.199 20 C -0.101 4.101 21 C 0.008 3.992 22 N -0.269 5.269 23 C -0.122 4.122 24 C -0.132 4.132 25 O 0.053 5.947 26 N -0.015 5.015 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.063 0.937 34 H 0.015 0.985 35 H 0.062 0.938 36 H 0.248 0.752 37 H 0.192 0.808 38 H 0.120 0.880 39 H 0.090 0.910 40 H 0.047 0.953 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -8.056 -0.491 13.061 15.353 hybrid contribution 1.106 0.344 1.032 1.551 sum -6.950 -0.147 14.093 15.715 Atomic orbital electron populations 1.22164 0.96593 1.01452 1.01689 1.21957 0.92000 0.98473 0.86687 0.90258 1.21207 0.86089 0.97982 0.93434 1.43900 0.98839 1.22666 1.66653 1.20800 0.92997 0.90434 0.93814 1.19034 0.97224 0.89437 1.33177 0.91614 1.24959 0.98612 0.96180 0.99023 1.70066 1.13356 1.21685 1.49376 0.86483 0.79224 0.83160 0.78747 1.21059 1.21742 1.20344 1.45623 1.63325 1.14763 1.07953 1.16789 0.77796 0.85619 0.81642 1.90708 1.52276 1.14707 1.84848 1.23586 1.05753 0.90823 0.97195 1.22358 1.04770 1.01424 0.91344 1.24044 1.04001 0.86778 0.95291 1.20453 0.92992 1.02294 0.83506 1.61906 1.10575 1.45112 1.09323 1.22398 1.01673 1.00700 0.87442 1.22533 0.95169 0.92079 1.03434 1.84808 1.61004 1.34790 1.14122 1.74268 1.11966 1.16634 0.98673 0.92907 0.91968 0.92879 0.93238 0.92695 0.95452 0.93650 0.98544 0.93805 0.75242 0.80815 0.88010 0.90991 0.95283 0.90916 0.90879 0.90727 0.91023 0.95113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.48 37.16 0.35 -2.14 16 2 C 0.12 2.27 2.88 -67.93 -0.20 2.07 16 3 H 0.08 1.74 7.57 -51.93 -0.39 1.35 16 4 C 0.14 2.81 5.36 -4.04 -0.02 2.79 16 5 N -0.60 -14.71 2.82 -181.11 -0.51 -15.22 16 6 C 0.16 4.09 9.01 59.85 0.54 4.63 16 7 C -0.26 -6.89 8.02 -15.06 -0.12 -7.01 16 8 H 0.07 1.71 7.84 -52.48 -0.41 1.30 16 9 C 0.01 0.32 5.13 -17.43 -0.09 0.23 16 10 N -0.90 -26.33 10.59 55.49 0.59 -25.74 16 11 Si 0.89 22.09 29.57 -169.99 -5.03 17.06 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 15 N -0.67 -14.07 4.48 -54.59 -0.24 -14.31 16 16 C 0.60 12.98 7.81 -12.11 -0.09 12.89 16 17 O -0.55 -12.74 16.61 5.37 0.09 -12.65 16 18 C -0.01 -0.28 7.19 -82.53 -0.59 -0.87 16 19 C -0.18 -2.78 9.58 -39.08 -0.37 -3.15 16 20 C -0.04 -0.52 6.34 -35.35 -0.22 -0.75 16 21 C 0.14 1.34 5.53 -4.97 -0.03 1.31 16 22 N -0.54 -5.19 5.01 -252.71 -1.27 -6.45 16 23 C 0.03 0.17 9.57 60.06 0.57 0.75 16 24 C 0.02 0.14 9.29 60.07 0.56 0.70 16 25 O 0.13 2.21 11.18 17.26 0.19 2.40 16 26 N -0.32 -6.24 11.84 33.29 0.39 -5.84 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.94 8.03 -51.93 -0.42 0.52 16 31 H 0.05 0.98 7.86 -51.93 -0.41 0.57 16 32 H 0.03 0.75 7.42 -51.93 -0.39 0.37 16 33 H 0.04 1.21 7.19 -51.93 -0.37 0.83 16 34 H 0.00 -0.09 7.84 -51.93 -0.41 -0.49 16 35 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.41 8.93 7.16 -40.82 -0.29 8.64 16 37 H 0.17 2.39 8.06 -52.48 -0.42 1.97 16 38 H 0.10 0.87 8.06 -51.93 -0.42 0.45 16 39 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 40 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 42 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 43 H 0.07 0.79 6.34 -51.93 -0.33 0.46 16 44 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 45 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 373.50 15.07 5.63 5.63 Total: -1.00 -32.48 373.50 -7.07 -39.55 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -7.19 Total: 4.14 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: 0.28 Total: 11.43 kcal Atomic # 7 Polarization: -66.53 SS G_CDS: -1.04 Total: -67.57 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.28 Total: -10.24 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.48 -7.07 -39.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754313928.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.852 kcal (2) G-P(sol) polarization free energy of solvation -32.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds