Wall clock time and date at job start Tue Mar 31 2020 09:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00163 * 2 1 4 4 C 1.50699 * 109.47120 * 179.97438 * 3 2 1 5 5 N 1.30448 * 125.98883 * 269.95661 * 4 3 2 6 6 N 1.39937 * 108.89449 * 180.02562 * 5 4 3 7 7 C 1.46501 * 125.75318 * 179.97438 * 6 5 4 8 8 C 1.34259 * 108.49412 * 359.75474 * 6 5 4 9 9 C 1.38052 * 107.41521 * 0.39369 * 8 6 5 10 10 C 1.47422 * 126.41489 * 179.87717 * 9 8 6 11 11 O 1.21605 * 120.00413 * 179.68562 * 10 9 8 12 12 N 1.34786 * 120.00040 * 359.67900 * 10 9 8 13 13 C 1.46495 * 119.99854 * 180.02562 * 12 10 9 14 14 H 1.08995 * 109.47378 * 325.00064 * 13 12 10 15 15 C 1.53002 * 109.47250 * 85.00271 * 13 12 10 16 16 C 1.53003 * 109.47229 * 205.00073 * 13 12 10 17 17 N 1.46500 * 109.46617 * 54.99839 * 16 13 12 18 18 C 1.46501 * 120.00316 * 269.99959 * 17 16 13 19 19 C 1.36946 * 119.99952 * 90.00415 * 17 16 13 20 20 H 1.07997 * 119.99252 * 339.75642 * 19 17 16 21 21 C 1.38803 * 119.99951 * 160.02982 * 19 17 16 22 22 N 1.31613 * 120.00503 * 344.63476 * 21 19 17 23 23 Si 1.86802 * 119.99872 * 164.63631 * 21 19 17 24 24 H 1.48504 * 109.47307 * 90.00021 * 23 21 19 25 25 H 1.48503 * 109.47454 * 209.99907 * 23 21 19 26 26 H 1.48504 * 109.46920 * 330.00114 * 23 21 19 27 27 H 1.08997 * 109.47295 * 59.99657 * 1 2 3 28 28 H 1.08999 * 109.47483 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46917 * 299.99942 * 1 2 3 30 30 H 1.09005 * 109.46822 * 59.99814 * 3 2 1 31 31 H 1.09001 * 109.47278 * 300.00223 * 3 2 1 32 32 H 1.09002 * 109.46474 * 89.97933 * 7 6 5 33 33 H 1.09000 * 109.47378 * 209.98178 * 7 6 5 34 34 H 1.09001 * 109.47351 * 329.98819 * 7 6 5 35 35 H 1.07995 * 126.29475 * 180.24174 * 8 6 5 36 36 H 0.96994 * 119.99896 * 0.02562 * 12 10 9 37 37 H 1.08998 * 109.46921 * 300.00188 * 15 13 12 38 38 H 1.09005 * 109.47118 * 59.99674 * 15 13 12 39 39 H 1.08996 * 109.47246 * 179.97438 * 15 13 12 40 40 H 1.09002 * 109.47126 * 295.00812 * 16 13 12 41 41 H 1.08995 * 109.47144 * 174.99855 * 16 13 12 42 42 H 1.09000 * 109.47106 * 264.77663 * 18 17 16 43 43 H 1.08994 * 109.47128 * 24.78269 * 18 17 16 44 44 H 1.09002 * 109.46964 * 144.78444 * 18 17 16 45 45 H 0.97007 * 120.00417 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2763 1.1269 1.0564 6 7 5.6099 1.0214 0.6457 7 6 6.7736 0.9307 1.5309 8 6 5.6426 1.0125 -0.6965 9 6 4.3406 1.1205 -1.1423 10 6 3.8967 1.1541 -2.5477 11 8 2.7128 1.2469 -2.8094 12 7 4.8031 1.0822 -3.5426 13 6 4.3621 1.1162 -4.9392 14 1 3.4064 0.6002 -5.0311 15 6 4.2019 2.5700 -5.3883 16 6 5.4031 0.4221 -5.8199 17 7 5.6439 -0.9323 -5.3161 18 6 6.6903 -1.1674 -4.3181 19 6 4.8909 -1.9787 -5.7781 20 1 3.9341 -1.7915 -6.2428 21 6 5.3548 -3.2800 -5.6441 22 7 6.6207 -3.5014 -5.3599 23 14 4.1824 -4.7171 -5.8670 24 1 4.1728 -5.1315 -7.2931 25 1 4.6285 -5.8553 -5.0239 26 1 2.8140 -4.3071 -5.4614 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 6.9813 -0.1163 1.7518 33 1 7.6388 1.3772 1.0407 34 1 6.5666 1.4636 2.4590 35 1 6.5255 0.9374 -1.3139 36 1 5.7474 1.0079 -3.3339 37 1 3.4604 3.0645 -4.7608 38 1 5.1577 3.0860 -5.2964 39 1 3.8742 2.5953 -6.4275 40 1 6.3339 0.9889 -5.7975 41 1 5.0347 0.3686 -6.8443 42 1 7.6080 -1.4748 -4.8194 43 1 6.8717 -0.2496 -3.7587 44 1 6.3697 -1.9527 -3.6336 45 1 6.9450 -4.4109 -5.2666 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754314242.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:54:41 Heat of formation + Delta-G solvation = 27.304814 kcal Electronic energy + Delta-G solvation = -26807.769339 eV Core-core repulsion = 23056.670573 eV Total energy + Delta-G solvation = -3751.098765 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.39256 -38.87842 -37.61045 -36.28067 -34.03679 -33.58974 -31.67830 -30.63138 -29.52153 -28.88664 -26.50604 -26.18622 -25.60062 -25.05663 -22.82924 -21.59117 -20.66829 -19.80774 -19.59046 -17.55207 -16.72670 -16.42164 -16.00118 -15.58125 -15.49885 -15.24759 -15.03119 -14.97627 -14.24169 -13.85226 -13.66157 -13.39251 -13.24303 -12.98822 -12.81662 -12.66658 -12.27164 -12.09237 -12.02199 -11.92756 -11.41073 -11.30290 -11.28338 -10.89075 -10.78005 -10.61750 -10.57578 -10.15856 -9.98814 -9.82057 -9.66532 -9.50515 -9.20445 -8.69848 -8.53664 -8.31168 -6.74287 -5.70391 -3.12866 1.57751 2.08595 2.29111 3.42401 3.49354 3.54505 3.69248 3.89352 4.12055 4.38362 4.55016 4.62817 4.86853 4.94425 5.11965 5.18430 5.29829 5.35130 5.45918 5.49183 5.50623 5.53342 5.59652 5.70987 5.77811 5.83394 5.93249 5.99738 6.12405 6.22964 6.39979 6.50362 6.56991 6.59737 6.75210 6.86287 7.18171 7.25505 7.33430 7.54065 7.66401 7.84529 8.14018 8.40077 8.84640 9.25651 9.89195 10.35341 11.35016 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.010824 B = 0.004534 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.131601 B = 6173.524724 C = 6409.478650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.379 6.379 3 C 0.144 3.856 4 C 0.127 3.873 5 N -0.286 5.286 6 N -0.361 5.361 7 C 0.098 3.902 8 C 0.098 3.902 9 C -0.263 4.263 10 C 0.593 3.407 11 O -0.548 6.548 12 N -0.702 5.702 13 C 0.118 3.882 14 H 0.085 0.915 15 C -0.157 4.157 16 C 0.143 3.857 17 N -0.598 5.598 18 C 0.170 3.830 19 C -0.248 4.248 20 H 0.068 0.932 21 C 0.001 3.999 22 N -0.910 5.910 23 Si 0.900 3.100 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.279 1.279 27 H 0.046 0.954 28 H 0.085 0.915 29 H 0.037 0.963 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.184 0.816 36 H 0.392 0.608 37 H 0.052 0.948 38 H 0.049 0.951 39 H 0.061 0.939 40 H 0.040 0.960 41 H 0.063 0.937 42 H 0.029 0.971 43 H -0.011 1.011 44 H 0.042 0.958 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.629 13.198 11.598 17.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.296 6.296 3 C 0.066 3.934 4 C -0.041 4.041 5 N -0.109 5.109 6 N -0.140 5.140 7 C -0.043 4.043 8 C -0.053 4.053 9 C -0.278 4.278 10 C 0.379 3.621 11 O -0.427 6.427 12 N -0.353 5.353 13 C 0.011 3.989 14 H 0.103 0.897 15 C -0.217 4.217 16 C 0.015 3.985 17 N -0.320 5.320 18 C 0.025 3.975 19 C -0.378 4.378 20 H 0.086 0.914 21 C -0.196 4.196 22 N -0.556 5.556 23 Si 0.730 3.270 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.205 1.205 27 H 0.064 0.936 28 H 0.104 0.896 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.201 0.799 36 H 0.227 0.773 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.048 0.952 43 H 0.007 0.993 44 H 0.061 0.939 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.090 12.892 12.792 18.194 hybrid contribution -0.051 -0.871 -0.768 1.162 sum -1.141 12.021 12.024 17.041 Atomic orbital electron populations 1.22712 0.80700 1.02784 0.99862 1.87941 1.19743 1.26544 1.95417 1.20657 0.84973 0.85965 1.01853 1.21905 0.95572 0.97351 0.89244 1.77102 0.86438 1.24759 1.22625 1.48250 1.06206 1.54658 1.04880 1.21992 0.83819 1.03983 0.94534 1.23109 0.99189 0.97971 0.85022 1.20377 0.91985 1.20450 0.95015 1.17135 0.85727 0.75903 0.83302 1.90687 1.16560 1.51318 1.84169 1.45838 1.09431 1.73862 1.06122 1.21884 1.01525 0.94863 0.80625 0.89687 1.22125 1.01156 0.97225 1.01153 1.21052 0.95093 0.86625 0.95736 1.43817 1.40577 1.01966 1.45669 1.20795 0.92005 0.93998 0.90679 1.19162 0.98450 0.85332 1.34846 0.91385 1.24888 0.95606 0.97700 1.01442 1.70066 1.12315 1.19393 1.53835 0.86315 0.80792 0.82401 0.77449 1.21493 1.21681 1.20471 0.93551 0.89639 0.94414 0.92444 0.89250 0.90108 0.88970 0.89001 0.79883 0.77283 0.92850 0.93188 0.92040 0.94220 0.91918 0.95238 0.99307 0.93879 0.93896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 11.01 101.05 1.11 1.57 16 2 O -0.38 -6.49 10.69 -35.23 -0.38 -6.86 16 3 C 0.14 2.23 5.97 36.01 0.21 2.45 16 4 C 0.13 2.12 6.89 -82.02 -0.57 1.55 16 5 N -0.29 -4.45 12.50 33.89 0.42 -4.03 16 6 N -0.36 -4.52 3.98 -67.60 -0.27 -4.79 16 7 C 0.10 0.70 11.44 59.85 0.68 1.39 16 8 C 0.10 1.28 10.99 -16.56 -0.18 1.09 16 9 C -0.26 -4.37 6.13 -105.07 -0.64 -5.02 16 10 C 0.59 11.08 7.78 -12.52 -0.10 10.98 16 11 O -0.55 -11.71 14.58 5.27 0.08 -11.64 16 12 N -0.70 -12.08 4.51 -54.88 -0.25 -12.33 16 13 C 0.12 2.12 2.88 -67.93 -0.20 1.92 16 14 H 0.09 1.81 7.58 -51.93 -0.39 1.42 16 15 C -0.16 -2.28 9.48 37.16 0.35 -1.93 16 16 C 0.14 2.77 5.29 -4.04 -0.02 2.75 16 17 N -0.60 -14.43 2.78 -181.12 -0.50 -14.94 16 18 C 0.17 3.92 8.52 59.85 0.51 4.43 16 19 C -0.25 -6.83 9.67 -15.06 -0.15 -6.98 16 20 H 0.07 1.87 7.87 -52.49 -0.41 1.45 16 21 C 0.00 0.03 5.06 -17.44 -0.09 -0.05 16 22 N -0.91 -26.41 10.66 55.49 0.59 -25.81 16 23 Si 0.90 22.52 29.58 -169.99 -5.03 17.49 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.04 0.38 8.14 -51.92 -0.42 -0.04 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 1.43 6.56 -51.93 -0.34 1.09 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.18 1.77 7.46 -52.49 -0.39 1.38 16 36 H 0.39 6.02 5.13 -40.82 -0.21 5.81 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 41 H 0.06 1.21 8.04 -51.93 -0.42 0.80 16 42 H 0.03 0.74 7.40 -51.93 -0.38 0.36 16 43 H -0.01 -0.21 5.76 -51.93 -0.30 -0.51 16 44 H 0.04 1.11 7.20 -51.93 -0.37 0.74 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 372.52 15.07 5.61 5.61 Total: -1.00 -35.84 372.52 -5.79 -41.63 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -7.00 Total: 1.52 kcal Atomic # 6 Polarization: 13.21 SS G_CDS: 0.94 Total: 14.14 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: -0.01 Total: -61.90 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.30 Total: -18.50 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.03 Total: 17.49 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.84 -5.79 -41.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754314242.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.936 kcal (2) G-P(sol) polarization free energy of solvation -35.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds