Wall clock time and date at job start Tue Mar 31 2020 09:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99941 * 2 1 4 4 C 1.50703 * 109.47161 * 179.97438 * 3 2 1 5 5 N 1.30446 * 125.99208 * 269.95662 * 4 3 2 6 6 N 1.39933 * 108.90021 * 180.02562 * 5 4 3 7 7 C 1.46494 * 125.75322 * 180.02562 * 6 5 4 8 8 C 1.34269 * 108.48976 * 359.75350 * 6 5 4 9 9 C 1.38048 * 107.41322 * 0.39288 * 8 6 5 10 10 C 1.47433 * 126.40972 * 179.87106 * 9 8 6 11 11 O 1.21603 * 119.99953 * 179.68662 * 10 9 8 12 12 N 1.34779 * 119.99875 * 359.68467 * 10 9 8 13 13 C 1.46502 * 119.99706 * 180.27291 * 12 10 9 14 14 H 1.09005 * 109.47133 * 34.73047 * 13 12 10 15 15 C 1.52997 * 109.47284 * 274.72867 * 13 12 10 16 16 C 1.52997 * 109.47162 * 154.72599 * 13 12 10 17 17 N 1.46504 * 109.47307 * 305.00425 * 16 13 12 18 18 C 1.46490 * 119.99965 * 269.99833 * 17 16 13 19 19 C 1.36942 * 119.99810 * 89.99397 * 17 16 13 20 20 H 1.08000 * 120.00090 * 22.35515 * 19 17 16 21 21 C 1.38813 * 119.99719 * 202.34615 * 19 17 16 22 22 N 1.31615 * 119.99734 * 11.25900 * 21 19 17 23 23 Si 1.86798 * 119.99881 * 191.25340 * 21 19 17 24 24 H 1.48505 * 109.47035 * 60.00515 * 23 21 19 25 25 H 1.48496 * 109.47362 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47337 * 300.00802 * 23 21 19 27 27 H 1.08998 * 109.47007 * 59.99862 * 1 2 3 28 28 H 1.08998 * 109.47217 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47566 * 300.00046 * 1 2 3 30 30 H 1.09001 * 109.47161 * 59.99991 * 3 2 1 31 31 H 1.09005 * 109.47403 * 300.00046 * 3 2 1 32 32 H 1.08998 * 109.47418 * 89.98245 * 7 6 5 33 33 H 1.09001 * 109.46769 * 209.97598 * 7 6 5 34 34 H 1.09000 * 109.47359 * 329.97682 * 7 6 5 35 35 H 1.07997 * 126.29036 * 180.24177 * 8 6 5 36 36 H 0.96994 * 120.00097 * 0.02562 * 12 10 9 37 37 H 1.09003 * 109.47011 * 179.97438 * 15 13 12 38 38 H 1.08997 * 109.47440 * 300.00219 * 15 13 12 39 39 H 1.09001 * 109.46857 * 60.00001 * 15 13 12 40 40 H 1.09007 * 109.46768 * 65.00015 * 16 13 12 41 41 H 1.08993 * 109.47214 * 185.00384 * 16 13 12 42 42 H 1.08999 * 109.47605 * 94.24341 * 18 17 16 43 43 H 1.08998 * 109.47553 * 214.24230 * 18 17 16 44 44 H 1.09002 * 109.47061 * 334.24372 * 18 17 16 45 45 H 0.97006 * 119.99314 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2764 1.1269 1.0564 6 7 5.6099 1.0216 0.6457 7 6 6.7735 0.9299 1.5310 8 6 5.6426 1.0126 -0.6966 9 6 4.3406 1.1205 -1.1423 10 6 3.8967 1.1542 -2.5478 11 8 2.7128 1.2469 -2.8095 12 7 4.8031 1.0823 -3.5426 13 6 4.3625 1.1218 -4.9393 14 1 3.4985 1.7804 -5.0292 15 6 3.9787 -0.2880 -5.3931 16 6 5.4989 1.6487 -5.8178 17 7 5.9470 2.9477 -5.3097 18 6 5.3253 4.1801 -5.8000 19 6 6.9471 3.0097 -4.3762 20 1 7.6425 2.1895 -4.2745 21 6 7.0673 4.1267 -3.5610 22 7 6.1033 5.0221 -3.5253 23 14 8.5970 4.3590 -2.5144 24 1 9.7924 4.4259 -3.3931 25 1 8.4802 5.6206 -1.7400 26 1 8.7346 3.2147 -1.5780 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 6.9810 -0.1173 1.7510 33 1 7.6387 1.3765 1.0411 34 1 6.5666 1.4622 2.4594 35 1 6.5255 0.9375 -1.3140 36 1 5.7474 1.0080 -3.3339 37 1 3.6504 -0.2584 -6.4321 38 1 4.8426 -0.9465 -5.3031 39 1 3.1691 -0.6633 -4.7671 40 1 6.3304 0.9442 -5.7976 41 1 5.1436 1.7622 -6.8420 42 1 4.5200 4.4737 -5.1266 43 1 6.0723 4.9729 -5.8403 44 1 4.9208 4.0109 -6.7979 45 1 6.1871 5.8025 -2.9553 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754314252.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:54:45 Heat of formation + Delta-G solvation = 23.326720 kcal Electronic energy + Delta-G solvation = -27251.754415 eV Core-core repulsion = 23500.483147 eV Total energy + Delta-G solvation = -3751.271269 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.12957 -38.59782 -37.51905 -36.14995 -33.91269 -33.36564 -31.57861 -30.55430 -29.24789 -28.71084 -26.37864 -26.13703 -25.59030 -24.90646 -22.59188 -21.56104 -20.50028 -19.47657 -19.38132 -17.38347 -16.67064 -16.28743 -15.73866 -15.46643 -15.29144 -15.22435 -14.95819 -14.79000 -14.07712 -13.70006 -13.68542 -13.19008 -13.05729 -12.79089 -12.72570 -12.48993 -12.15206 -12.12143 -11.87973 -11.74690 -11.35719 -11.26303 -11.22620 -10.88955 -10.77806 -10.63926 -10.35765 -10.20815 -10.10018 -9.84036 -9.54872 -9.25981 -8.98354 -8.59539 -8.41120 -8.03672 -6.77797 -5.75579 -3.21199 1.85925 2.33031 2.52386 3.21348 3.33960 3.35822 4.01673 4.05805 4.34148 4.40984 4.59204 4.93680 5.08858 5.10615 5.32442 5.35058 5.36204 5.43305 5.51873 5.54453 5.65759 5.73175 5.77174 5.81944 5.83340 5.99632 6.06387 6.15630 6.22466 6.32751 6.50537 6.61788 6.67088 6.78093 6.96361 7.01395 7.31858 7.38743 7.44549 7.67549 7.78329 7.80883 8.35060 8.48587 9.14628 9.19071 9.83480 10.34304 11.28633 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.011171 B = 0.006025 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.844962 B = 4646.326252 C = 6196.055009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.382 6.382 3 C 0.145 3.855 4 C 0.125 3.875 5 N -0.290 5.290 6 N -0.363 5.363 7 C 0.099 3.901 8 C 0.104 3.896 9 C -0.257 4.257 10 C 0.597 3.403 11 O -0.560 6.560 12 N -0.686 5.686 13 C 0.121 3.879 14 H 0.077 0.923 15 C -0.159 4.159 16 C 0.142 3.858 17 N -0.598 5.598 18 C 0.165 3.835 19 C -0.256 4.256 20 H 0.065 0.935 21 C 0.008 3.992 22 N -0.896 5.896 23 Si 0.896 3.104 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.286 1.286 27 H 0.046 0.954 28 H 0.083 0.917 29 H 0.037 0.963 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.184 0.816 36 H 0.399 0.601 37 H 0.057 0.943 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.047 0.953 41 H 0.051 0.949 42 H 0.028 0.972 43 H 0.043 0.957 44 H -0.004 1.004 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.114 -9.368 5.420 11.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.300 6.300 3 C 0.067 3.933 4 C -0.042 4.042 5 N -0.113 5.113 6 N -0.143 5.143 7 C -0.042 4.042 8 C -0.046 4.046 9 C -0.272 4.272 10 C 0.384 3.616 11 O -0.441 6.441 12 N -0.335 5.335 13 C 0.013 3.987 14 H 0.095 0.905 15 C -0.218 4.218 16 C 0.014 3.986 17 N -0.320 5.320 18 C 0.020 3.980 19 C -0.386 4.386 20 H 0.082 0.918 21 C -0.191 4.191 22 N -0.540 5.540 23 Si 0.726 3.274 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.213 1.213 27 H 0.064 0.936 28 H 0.101 0.899 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.201 0.799 36 H 0.234 0.766 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.046 0.954 43 H 0.062 0.938 44 H 0.014 0.986 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.668 -9.274 6.662 11.726 hybrid contribution 1.328 0.564 0.031 1.443 sum -1.340 -8.710 6.692 11.065 Atomic orbital electron populations 1.22688 0.80950 1.02418 1.00021 1.87881 1.19553 1.27075 1.95476 1.20660 0.85112 0.85460 1.02056 1.21833 0.95380 0.97630 0.89398 1.77036 0.86486 1.25098 1.22724 1.48183 1.06047 1.55094 1.04937 1.21951 0.84207 1.03404 0.94683 1.23148 0.99284 0.97401 0.84781 1.20323 0.91861 1.19972 0.95023 1.17050 0.85590 0.75608 0.83345 1.90646 1.16866 1.52279 1.84294 1.45512 1.09726 1.72921 1.05341 1.21762 1.00008 0.95186 0.81711 0.90531 1.22159 1.01086 0.97839 1.00749 1.21190 0.93991 0.88624 0.94830 1.43865 1.41300 0.99583 1.47276 1.20785 0.97152 0.87959 0.92109 1.18993 1.04241 1.03912 1.11416 0.91776 1.24982 0.97163 0.98842 0.98127 1.70050 1.30714 1.12511 1.40745 0.86506 0.83510 0.77140 0.80233 1.21096 1.21762 1.21316 0.93577 0.89891 0.94412 0.92481 0.89060 0.90434 0.89054 0.89079 0.79861 0.76603 0.92436 0.93172 0.92815 0.93460 0.93034 0.95374 0.93795 0.98595 0.93729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 11.01 101.05 1.11 1.56 16 2 O -0.38 -6.58 10.69 -35.23 -0.38 -6.96 16 3 C 0.15 2.54 5.97 36.01 0.21 2.75 16 4 C 0.13 2.40 6.89 -82.02 -0.57 1.84 16 5 N -0.29 -5.25 12.50 33.90 0.42 -4.83 16 6 N -0.36 -5.70 3.98 -67.60 -0.27 -5.97 16 7 C 0.10 1.02 11.44 59.84 0.68 1.70 16 8 C 0.10 1.75 10.99 -16.56 -0.18 1.56 16 9 C -0.26 -5.05 6.13 -105.06 -0.64 -5.69 16 10 C 0.60 12.69 7.78 -12.52 -0.10 12.59 16 11 O -0.56 -13.09 14.58 5.28 0.08 -13.01 16 12 N -0.69 -13.50 4.47 -54.88 -0.25 -13.74 16 13 C 0.12 2.29 2.88 -67.93 -0.20 2.09 16 14 H 0.08 1.67 7.57 -51.93 -0.39 1.28 16 15 C -0.16 -2.47 9.49 37.16 0.35 -2.12 16 16 C 0.14 2.70 5.36 -4.04 -0.02 2.68 16 17 N -0.60 -13.98 2.82 -181.13 -0.51 -14.50 16 18 C 0.16 3.98 9.01 59.84 0.54 4.52 16 19 C -0.26 -6.29 8.02 -15.06 -0.12 -6.41 16 20 H 0.06 1.50 7.84 -52.49 -0.41 1.09 16 21 C 0.01 0.21 5.13 -17.43 -0.09 0.12 16 22 N -0.90 -25.09 10.58 55.49 0.59 -24.50 16 23 Si 0.90 20.21 29.57 -169.99 -5.03 15.18 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -6.01 7.11 56.52 0.40 -5.60 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 1.71 6.56 -51.93 -0.34 1.37 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.18 2.63 7.46 -52.49 -0.39 2.24 16 36 H 0.40 7.52 6.32 -40.82 -0.26 7.27 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.05 0.84 8.03 -51.93 -0.42 0.43 16 41 H 0.05 0.90 7.86 -51.93 -0.41 0.49 16 42 H 0.03 0.76 7.42 -51.93 -0.39 0.37 16 43 H 0.04 1.14 7.19 -51.93 -0.37 0.76 16 44 H 0.00 -0.10 7.84 -51.93 -0.41 -0.50 16 45 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 374.44 15.07 5.64 5.64 Total: -1.00 -33.11 374.44 -5.86 -38.97 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -7.15 Total: 6.51 kcal Atomic # 6 Polarization: 16.22 SS G_CDS: 0.99 Total: 17.20 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: -0.01 Total: -63.54 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.30 Total: -19.97 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.03 Total: 15.18 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.11 -5.86 -38.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754314252.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.294 kcal (2) G-P(sol) polarization free energy of solvation -33.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds