Wall clock time and date at job start Tue Mar 31 2020 10:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 120.00083 * 2 1 4 4 H 1.48494 * 109.47057 * 270.00810 * 3 2 1 5 5 H 1.48508 * 109.46648 * 30.00556 * 3 2 1 6 6 H 1.48494 * 109.46997 * 150.00178 * 3 2 1 7 7 C 1.38819 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99723 * 359.97438 * 7 2 1 9 9 N 1.36935 * 119.99528 * 179.97438 * 7 2 1 10 10 C 1.46506 * 119.99383 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46853 * 204.99695 * 10 9 7 12 12 C 1.52997 * 109.47215 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47046 * 59.99923 * 12 11 10 14 14 N 1.46506 * 109.47011 * 60.00013 * 13 12 11 15 15 C 1.34773 * 119.99968 * 154.99680 * 14 13 12 16 16 O 1.21283 * 120.00360 * 359.73034 * 15 14 13 17 17 C 1.50706 * 120.00081 * 180.02562 * 15 14 13 18 18 C 1.52998 * 109.47348 * 179.72561 * 17 15 14 19 19 C 1.53170 * 109.54574 * 294.55768 * 18 17 15 20 20 C 1.53088 * 109.16514 * 183.15183 * 19 18 17 21 21 O 1.42903 * 109.41634 * 57.60640 * 20 19 18 22 22 C 1.42899 * 114.09788 * 298.84562 * 21 20 19 23 23 C 1.53090 * 109.41589 * 61.15301 * 22 21 20 24 24 C 1.53000 * 109.47680 * 300.00245 * 13 12 11 25 25 C 1.52998 * 109.47209 * 84.99952 * 10 9 7 26 26 H 0.96997 * 120.00042 * 359.97438 * 1 2 3 27 27 H 0.96998 * 120.00785 * 359.97438 * 9 7 2 28 28 H 1.09002 * 109.47102 * 324.99776 * 10 9 7 29 29 H 1.09005 * 109.47186 * 60.00092 * 11 10 9 30 30 H 1.08992 * 109.47335 * 299.99932 * 11 10 9 31 31 H 1.09002 * 109.47084 * 300.00292 * 12 11 10 32 32 H 1.08998 * 109.47332 * 180.02562 * 12 11 10 33 33 H 1.08995 * 109.47536 * 180.02562 * 13 12 11 34 34 H 0.96998 * 119.99507 * 335.00535 * 14 13 12 35 35 H 1.09001 * 109.46564 * 299.73030 * 17 15 14 36 36 H 1.08998 * 109.47012 * 59.72084 * 17 15 14 37 37 H 1.09002 * 109.53909 * 54.82602 * 18 17 15 38 38 H 1.09004 * 109.51971 * 303.05900 * 19 18 17 39 39 H 1.09000 * 109.52396 * 63.24592 * 19 18 17 40 40 H 1.08996 * 109.47916 * 297.62309 * 20 19 18 41 41 H 1.09005 * 109.48045 * 177.58677 * 20 19 18 42 42 H 1.09001 * 109.47905 * 301.17162 * 22 21 20 43 43 H 1.09004 * 109.49038 * 181.14485 * 22 21 20 44 44 H 1.09008 * 109.52547 * 182.48657 * 23 22 21 45 45 H 1.09004 * 109.52154 * 62.30179 * 23 22 21 46 46 H 1.08996 * 109.47804 * 179.97438 * 24 13 12 47 47 H 1.09002 * 109.46963 * 299.99945 * 24 13 12 48 48 H 1.08998 * 109.47303 * 299.99979 * 25 10 9 49 49 H 1.09002 * 109.47232 * 59.99904 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0011 11 6 5.4996 -2.2586 0.6079 12 6 6.2644 -3.5837 0.6086 13 6 6.4099 -4.0892 -0.8281 14 7 7.1455 -3.1012 -1.6213 15 6 7.8277 -3.4894 -2.7169 16 8 7.8368 -4.6574 -3.0434 17 6 8.5848 -2.4731 -3.5325 18 6 9.2714 -3.1716 -4.7079 19 6 10.3424 -4.1307 -4.1794 20 6 11.0769 -4.7655 -5.3631 21 8 11.6464 -3.7371 -6.1756 22 6 10.6875 -2.8380 -6.7360 23 6 9.9373 -2.1258 -5.6074 24 6 5.0225 -4.3014 -1.4372 25 6 4.2577 -2.9757 -1.4380 26 1 -0.4850 0.8400 0.0004 27 1 3.8646 -0.3621 -0.0014 28 1 3.5650 -3.2063 0.5888 29 1 5.3959 -1.8989 1.6317 30 1 6.0467 -1.5233 0.0181 31 1 5.7171 -4.3188 1.1987 32 1 7.2527 -3.4327 1.0428 33 1 6.9544 -5.0335 -0.8277 34 1 7.1415 -2.1677 -1.3578 35 1 7.8917 -1.7217 -3.9108 36 1 9.3362 -1.9918 -2.9065 37 1 8.5322 -3.7294 -5.2828 38 1 11.0527 -3.5795 -3.5630 39 1 9.8701 -4.9111 -3.5828 40 1 10.3734 -5.3497 -5.9563 41 1 11.8688 -5.4165 -4.9927 42 1 9.9789 -3.3970 -7.3472 43 1 11.1986 -2.1004 -7.3548 44 1 9.1752 -1.4723 -6.0321 45 1 10.6395 -1.5341 -5.0199 46 1 5.1262 -4.6611 -2.4609 47 1 4.4753 -5.0366 -0.8471 48 1 3.2693 -3.1269 -1.8719 49 1 4.8048 -2.2403 -2.0279 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026468340.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:00:47 Heat of formation + Delta-G solvation = -98.837484 kcal Electronic energy + Delta-G solvation = -26592.292128 eV Core-core repulsion = 22939.263766 eV Total energy + Delta-G solvation = -3653.028363 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.48261 -39.42378 -38.04681 -35.03704 -34.59741 -32.81733 -31.32327 -31.14825 -30.54840 -29.32507 -27.78908 -24.13430 -23.77474 -23.29030 -22.36006 -21.09778 -20.79094 -20.17000 -19.04719 -17.58431 -17.27190 -16.40133 -16.24490 -15.72884 -15.63698 -15.32817 -14.93456 -14.76260 -14.35344 -14.21817 -13.80330 -13.61902 -13.23046 -12.96820 -12.85421 -12.65401 -12.52814 -12.31764 -12.07062 -11.97628 -11.84794 -11.57122 -11.30429 -11.22961 -10.99589 -10.94774 -10.84978 -10.54937 -10.49220 -10.26239 -10.08913 -9.93118 -9.80535 -9.60517 -9.59765 -8.99441 -8.87247 -7.29310 -5.79514 -3.14992 2.62107 3.16799 3.33151 3.35408 3.41811 3.63231 4.38743 4.43632 4.50850 4.55665 4.72738 4.79488 4.90326 4.94874 4.98385 5.01722 5.11380 5.14610 5.24185 5.33371 5.42119 5.44797 5.47324 5.50500 5.55955 5.59502 5.61283 5.63955 5.75696 5.79276 5.81291 5.89660 5.94333 6.02387 6.11431 6.13157 6.23568 6.35345 6.38604 6.53424 6.66534 6.86050 6.94354 7.00191 7.50907 7.97277 8.22298 8.39711 9.18262 9.90768 10.10493 11.38988 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019530 B = 0.002860 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.357054 B = 9788.845734 C =10597.309580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.242 4.242 8 H 0.090 0.910 9 N -0.749 5.749 10 C 0.182 3.818 11 C -0.128 4.128 12 C -0.122 4.122 13 C 0.147 3.853 14 N -0.719 5.719 15 C 0.513 3.487 16 O -0.543 6.543 17 C -0.139 4.139 18 C -0.072 4.072 19 C -0.155 4.155 20 C 0.062 3.938 21 O -0.387 6.387 22 C 0.061 3.939 23 C -0.153 4.153 24 C -0.128 4.128 25 C -0.131 4.131 26 H 0.259 0.741 27 H 0.359 0.641 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.400 0.600 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.093 0.907 40 H 0.050 0.950 41 H 0.091 0.909 42 H 0.050 0.950 43 H 0.092 0.908 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.059 0.941 47 H 0.068 0.932 48 H 0.064 0.936 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.877 -6.595 -7.527 24.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.372 4.372 8 H 0.108 0.892 9 N -0.391 5.391 10 C 0.073 3.927 11 C -0.166 4.166 12 C -0.160 4.160 13 C 0.043 3.957 14 N -0.371 5.371 15 C 0.300 3.700 16 O -0.421 6.421 17 C -0.179 4.179 18 C -0.091 4.091 19 C -0.192 4.192 20 C -0.015 4.015 21 O -0.306 6.306 22 C -0.015 4.015 23 C -0.191 4.191 24 C -0.167 4.167 25 C -0.172 4.172 26 H 0.069 0.931 27 H 0.192 0.808 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.235 0.765 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.112 0.888 40 H 0.069 0.931 41 H 0.109 0.891 42 H 0.068 0.932 43 H 0.110 0.890 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.078 0.922 47 H 0.087 0.913 48 H 0.083 0.917 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 22.805 -7.475 -7.758 25.222 hybrid contribution 0.044 1.840 0.182 1.850 sum 22.849 -5.634 -7.577 24.723 Atomic orbital electron populations 1.69698 1.05115 1.25791 1.57636 1.24685 0.95227 0.97192 1.02172 0.86542 0.79167 0.85073 0.77668 1.21198 1.21804 1.20390 1.19078 0.80635 0.94655 1.42784 0.89250 1.42787 1.03991 1.02007 1.90353 1.20204 0.90109 0.89093 0.93300 1.21850 0.97024 0.96210 1.01538 1.21781 1.00516 0.98545 0.95179 1.20967 0.92610 0.91947 0.90188 1.46197 1.51101 1.12151 1.27686 1.20612 0.78833 0.89741 0.80817 1.90644 1.62907 1.19078 1.69502 1.21755 1.00259 0.98282 0.97577 1.20919 0.97133 0.95916 0.95155 1.22354 0.97660 1.00504 0.98700 1.22584 0.97901 0.89570 0.91437 1.87909 1.33741 1.42298 1.66681 1.22545 0.91964 0.92457 0.94566 1.22281 1.00289 0.98459 0.98053 1.21923 0.94884 0.98967 1.00933 1.22177 0.99858 0.95093 1.00058 0.93079 0.80832 0.92685 0.91419 0.92819 0.90238 0.91789 0.89928 0.76482 0.88710 0.88985 0.90165 0.91748 0.88813 0.93144 0.89070 0.93194 0.88975 0.90701 0.90944 0.92201 0.91299 0.91698 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.09 13.97 55.49 0.78 -28.32 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 3 Si 0.88 21.65 27.73 -169.99 -4.71 16.94 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 7 C -0.24 -6.65 10.41 -15.06 -0.16 -6.80 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 9 N -0.75 -16.90 4.93 -53.42 -0.26 -17.17 16 10 C 0.18 3.24 2.77 -67.93 -0.19 3.05 16 11 C -0.13 -1.74 5.22 -26.73 -0.14 -1.88 16 12 C -0.12 -1.35 5.61 -26.74 -0.15 -1.50 16 13 C 0.15 1.75 2.78 -67.93 -0.19 1.56 16 14 N -0.72 -7.88 4.23 -53.80 -0.23 -8.11 16 15 C 0.51 5.94 7.53 -10.98 -0.08 5.85 16 16 O -0.54 -7.92 13.66 5.56 0.08 -7.84 16 17 C -0.14 -1.20 5.18 -27.88 -0.14 -1.34 16 18 C -0.07 -0.65 1.91 -90.44 -0.17 -0.83 16 19 C -0.15 -1.46 5.13 -26.60 -0.14 -1.59 16 20 C 0.06 0.56 6.84 37.20 0.25 0.82 16 21 O -0.39 -3.95 10.77 -35.23 -0.38 -4.33 16 22 C 0.06 0.49 6.84 37.20 0.25 0.75 16 23 C -0.15 -1.15 5.42 -26.60 -0.14 -1.30 16 24 C -0.13 -1.77 5.61 -26.70 -0.15 -1.92 16 25 C -0.13 -2.18 5.35 -26.70 -0.14 -2.32 16 26 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 27 H 0.36 7.93 5.66 -40.82 -0.23 7.70 16 28 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.68 6.51 -51.93 -0.34 0.34 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.03 7.57 -51.93 -0.39 0.63 16 34 H 0.40 3.87 6.87 -40.82 -0.28 3.59 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.84 7.95 -51.93 -0.41 0.43 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.09 1.04 6.07 -51.93 -0.32 0.73 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 48 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 49 H 0.05 0.85 7.61 -51.93 -0.39 0.45 16 LS Contribution 372.95 15.07 5.62 5.62 Total: -1.00 -32.47 372.95 -9.22 -41.68 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -8.72 Total: 9.00 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -1.38 Total: -7.47 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.28 Total: -53.59 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: -0.30 Total: -12.18 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.71 Total: 16.94 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.47 -9.22 -41.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026468340.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.153 kcal (2) G-P(sol) polarization free energy of solvation -32.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds