Wall clock time and date at job start Tue Mar 31 2020 10:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 120.00257 * 2 1 4 4 H 1.48500 * 109.47035 * 240.00465 * 3 2 1 5 5 H 1.48497 * 109.47148 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47291 * 120.00307 * 3 2 1 7 7 C 1.38821 * 119.99625 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99868 * 195.66523 * 7 2 1 9 9 N 1.36929 * 120.00000 * 15.66988 * 7 2 1 10 10 C 1.44576 * 118.64488 * 206.52057 * 9 7 2 11 11 C 1.54866 * 109.60392 * 270.70380 * 10 9 7 12 12 C 1.47095 * 110.31967 * 288.72864 * 11 10 9 13 13 C 1.52573 * 114.32189 * 62.80529 * 12 11 10 14 14 C 1.50882 * 109.35243 * 274.98374 * 13 12 11 15 15 H 1.08996 * 109.26518 * 331.75751 * 14 13 12 16 16 N 1.46504 * 109.36152 * 212.08276 * 14 13 12 17 17 C 1.34781 * 120.00065 * 154.35923 * 16 14 13 18 18 O 1.21276 * 119.99590 * 0.28079 * 17 16 14 19 19 C 1.50701 * 120.00017 * 179.97438 * 17 16 14 20 20 C 1.53002 * 109.47015 * 300.00231 * 19 17 16 21 21 C 1.53001 * 109.46553 * 180.02562 * 20 19 17 22 22 C 1.52997 * 109.47468 * 60.00411 * 21 20 19 23 23 O 1.42897 * 109.47421 * 59.99388 * 22 21 20 24 24 C 1.53005 * 109.46664 * 299.99673 * 22 21 20 25 25 C 1.53001 * 109.46593 * 180.02562 * 19 17 16 26 26 C 1.47603 * 118.64714 * 26.49788 * 9 7 2 27 27 H 0.97000 * 119.99421 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.44996 * 30.74341 * 10 9 7 29 29 H 1.09005 * 109.45299 * 150.66214 * 10 9 7 30 30 H 1.08998 * 109.32572 * 48.99179 * 11 10 9 31 31 H 1.09001 * 109.32573 * 168.64317 * 11 10 9 32 32 H 1.09003 * 108.50634 * 184.05143 * 12 11 10 33 33 H 1.08991 * 108.51496 * 301.70315 * 12 11 10 34 34 H 1.09000 * 109.48981 * 155.01858 * 13 12 11 35 35 H 1.08996 * 109.49122 * 34.94425 * 13 12 11 36 36 H 0.97003 * 120.00384 * 334.36197 * 16 14 13 37 37 H 1.08995 * 109.46955 * 60.00632 * 19 17 16 38 38 H 1.09001 * 109.47228 * 299.99787 * 20 19 17 39 39 H 1.08995 * 109.47050 * 59.99970 * 20 19 17 40 40 H 1.09001 * 109.47064 * 299.99746 * 21 20 19 41 41 H 1.09001 * 109.46578 * 180.02562 * 21 20 19 42 42 H 1.08995 * 109.46980 * 179.97438 * 22 21 20 43 43 H 0.96703 * 113.99994 * 60.00019 * 23 22 21 44 44 H 1.09001 * 109.47104 * 300.00197 * 24 22 21 45 45 H 1.09004 * 109.46904 * 179.97438 * 24 22 21 46 46 H 1.08988 * 109.47417 * 299.99913 * 25 19 17 47 47 H 1.09003 * 109.46936 * 60.00824 * 25 19 17 48 48 H 1.09003 * 108.94815 * 17.20492 * 26 9 7 49 49 H 1.09003 * 108.95013 * 258.57763 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2023 -0.0005 8 1 3.0601 -1.2198 0.2520 9 7 1.3637 -2.3659 -0.3213 10 6 1.8688 -3.6099 0.2148 11 6 2.9223 -4.2031 -0.7530 12 6 2.2702 -4.7072 -1.9713 13 6 1.5623 -3.6353 -2.7946 14 6 0.1712 -3.4241 -2.2499 15 1 -0.1781 -4.3472 -1.7875 16 7 -0.7294 -3.0591 -3.3463 17 6 -2.0490 -3.3153 -3.2482 18 8 -2.4915 -3.8434 -2.2502 19 6 -2.9755 -2.9394 -4.3758 20 6 -2.9086 -1.4286 -4.6086 21 6 -3.8497 -1.0470 -5.7530 22 6 -5.2819 -1.4440 -5.3895 23 8 -5.6781 -0.7605 -4.1988 24 6 -5.3487 -2.9547 -5.1566 25 6 -4.4079 -3.3361 -4.0126 26 6 0.1795 -2.2984 -1.1999 27 1 -0.4849 0.8401 0.0004 28 1 2.3301 -3.4262 1.1852 29 1 1.0460 -4.3153 0.3322 30 1 3.6410 -3.4291 -1.0222 31 1 3.4435 -5.0236 -0.2599 32 1 3.0260 -5.1815 -2.5973 33 1 1.5370 -5.4610 -1.6848 34 1 1.5009 -3.9568 -3.8343 35 1 2.1219 -2.7019 -2.7346 36 1 -0.3761 -2.6330 -4.1429 37 1 -2.6729 -3.4608 -5.2838 38 1 -3.2113 -0.9073 -3.7005 39 1 -1.8882 -1.1457 -4.8671 40 1 -3.5474 -1.5684 -6.6612 41 1 -3.8017 0.0292 -5.9192 42 1 -5.9523 -1.1716 -6.2046 43 1 -5.6596 0.2034 -4.2739 44 1 -5.0465 -3.4761 -6.0649 45 1 -6.3690 -3.2375 -4.8972 46 1 -4.4558 -4.4121 -3.8464 47 1 -4.7102 -2.8142 -3.1046 48 1 0.1732 -1.3363 -1.7122 49 1 -0.7196 -2.3778 -0.5887 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034192021.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:11 Heat of formation + Delta-G solvation = -88.295374 kcal Electronic energy + Delta-G solvation = -27678.053216 eV Core-core repulsion = 24025.481994 eV Total energy + Delta-G solvation = -3652.571222 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.08386 -38.62390 -37.47706 -34.92046 -34.31100 -33.49300 -31.08075 -30.70405 -30.46306 -29.24683 -26.01156 -24.30115 -23.76869 -22.78176 -22.45180 -20.38446 -19.99983 -19.39803 -19.12722 -17.05156 -16.71719 -16.56110 -15.90533 -15.47731 -15.21753 -14.84841 -14.33010 -14.19257 -13.87657 -13.40836 -13.37486 -13.31736 -13.10298 -12.67585 -12.40915 -12.32614 -12.17799 -12.02011 -12.00455 -11.36061 -11.25554 -11.10762 -11.06195 -10.94127 -10.67597 -10.51831 -10.40382 -10.23052 -10.19393 -10.09461 -9.92803 -9.86397 -9.74594 -9.47316 -9.16518 -8.45180 -8.31506 -6.60075 -5.72085 -3.17168 3.11662 3.38723 3.44797 3.45440 3.65342 4.16624 4.52746 4.59204 4.63604 4.79479 5.05300 5.15377 5.18719 5.29007 5.31656 5.37580 5.42627 5.43814 5.50271 5.67286 5.67800 5.70834 5.76296 5.88622 5.91610 5.99382 6.07278 6.14869 6.20431 6.27970 6.31380 6.37166 6.52570 6.56789 6.66884 6.69671 6.71452 6.85233 6.96757 7.05951 7.14438 7.45638 7.59779 7.80983 7.88271 8.04909 8.51445 8.75670 9.28489 9.95804 10.41435 11.33896 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.013491 B = 0.004435 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.938579 B = 6312.461296 C = 7705.357873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.005 3.995 3 Si 0.899 3.101 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.260 4.260 8 H 0.065 0.935 9 N -0.587 5.587 10 C 0.155 3.845 11 C -0.147 4.147 12 C -0.098 4.098 13 C -0.115 4.115 14 C 0.119 3.881 15 H 0.071 0.929 16 N -0.719 5.719 17 C 0.515 3.485 18 O -0.538 6.538 19 C -0.103 4.103 20 C -0.107 4.107 21 C -0.149 4.149 22 C 0.103 3.897 23 O -0.560 6.560 24 C -0.112 4.112 25 C -0.095 4.095 26 C 0.176 3.824 27 H 0.253 0.747 28 H 0.045 0.955 29 H 0.032 0.968 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.043 0.957 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.080 0.920 36 H 0.393 0.607 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.051 0.949 43 H 0.375 0.625 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.066 0.934 47 H 0.081 0.919 48 H 0.076 0.924 49 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.937 -4.777 -14.898 16.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.194 4.194 3 Si 0.729 3.271 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.390 4.390 8 H 0.083 0.917 9 N -0.309 5.309 10 C 0.026 3.974 11 C -0.188 4.188 12 C -0.136 4.136 13 C -0.153 4.153 14 C 0.014 3.986 15 H 0.089 0.911 16 N -0.369 5.369 17 C 0.300 3.700 18 O -0.415 6.415 19 C -0.124 4.124 20 C -0.145 4.145 21 C -0.187 4.187 22 C 0.044 3.956 23 O -0.365 6.365 24 C -0.149 4.149 25 C -0.133 4.133 26 C 0.050 3.950 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.226 0.774 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.222 0.778 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.099 0.901 48 H 0.095 0.905 49 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -6.467 -5.652 -13.922 16.358 hybrid contribution 0.809 1.753 -0.730 2.064 sum -5.657 -3.899 -14.652 16.183 Atomic orbital electron populations 1.70096 1.05103 1.25396 1.53671 1.25051 0.95214 0.98264 1.00829 0.86433 0.78916 0.83706 0.78080 1.21161 1.21728 1.20901 1.19154 0.92368 0.84985 1.42493 0.91723 1.43532 1.32473 1.01993 1.52864 1.20730 0.94075 0.88295 0.94257 1.21504 1.00192 0.99655 0.97411 1.20223 0.98902 0.97490 0.97002 1.21279 0.95900 1.00769 0.97366 1.21733 0.87947 1.00633 0.88311 0.91067 1.46166 1.07465 1.62458 1.20830 1.20502 0.82734 0.78414 0.88308 1.90689 1.75950 1.43049 1.31798 1.21315 0.95967 0.97697 0.97463 1.21425 0.99397 0.93942 0.99712 1.22245 0.96116 1.01457 0.98905 1.21785 0.93578 0.93329 0.86879 1.86580 1.90232 1.22897 1.36785 1.21565 1.00625 0.93363 0.99358 1.21230 0.91592 1.01505 0.98980 1.21294 0.88993 0.95140 0.89600 0.93678 0.93622 0.94974 0.92102 0.93499 0.93801 0.93284 0.93243 0.90173 0.77407 0.89418 0.90229 0.91533 0.91067 0.91476 0.93124 0.77807 0.90905 0.91171 0.91560 0.90063 0.90535 0.95144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.36 11.01 55.49 0.61 -25.75 16 2 C 0.01 0.15 4.87 -17.43 -0.08 0.06 16 3 Si 0.90 21.63 29.58 -169.99 -5.03 16.60 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.26 -7.08 9.44 -15.06 -0.14 -7.22 16 8 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16 9 N -0.59 -14.68 2.27 -172.09 -0.39 -15.07 16 10 C 0.15 3.32 5.65 -4.09 -0.02 3.29 16 11 C -0.15 -2.62 5.74 -28.58 -0.16 -2.79 16 12 C -0.10 -1.61 5.16 -29.78 -0.15 -1.76 16 13 C -0.12 -1.97 5.07 -28.01 -0.14 -2.11 16 14 C 0.12 2.32 2.27 -68.50 -0.16 2.16 16 15 H 0.07 1.51 6.73 -51.93 -0.35 1.16 16 16 N -0.72 -11.96 4.86 -54.36 -0.26 -12.22 16 17 C 0.51 9.00 7.12 -10.98 -0.08 8.92 16 18 O -0.54 -11.84 15.64 5.56 0.09 -11.75 16 19 C -0.10 -1.33 2.53 -91.77 -0.23 -1.57 16 20 C -0.11 -1.28 4.96 -26.73 -0.13 -1.42 16 21 C -0.15 -1.34 5.64 -26.73 -0.15 -1.49 16 22 C 0.10 0.98 3.77 -26.73 -0.10 0.88 16 23 O -0.56 -6.37 11.97 -35.23 -0.42 -6.80 16 24 C -0.11 -1.13 5.66 -26.75 -0.15 -1.28 16 25 C -0.10 -1.27 4.34 -26.75 -0.12 -1.38 16 26 C 0.18 4.31 4.26 -2.95 -0.01 4.30 16 27 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.05 0.99 7.99 -51.93 -0.41 0.58 16 29 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.80 7.35 -51.93 -0.38 0.42 16 34 H 0.05 0.72 7.95 -51.93 -0.41 0.30 16 35 H 0.08 1.55 7.48 -51.93 -0.39 1.16 16 36 H 0.39 5.35 7.97 -40.82 -0.33 5.02 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.08 1.18 7.68 -51.93 -0.40 0.79 16 39 H 0.07 0.76 7.56 -51.93 -0.39 0.36 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.38 2.88 9.08 45.56 0.41 3.29 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 0.90 8.10 -51.94 -0.42 0.48 16 47 H 0.08 1.34 7.63 -51.93 -0.40 0.94 16 48 H 0.08 2.05 6.31 -51.93 -0.33 1.72 16 49 H 0.03 0.88 8.03 -51.93 -0.42 0.46 16 LS Contribution 370.53 15.07 5.58 5.58 Total: -1.00 -32.97 370.53 -9.65 -42.62 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -7.98 Total: 8.17 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -1.84 Total: -1.39 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.04 Total: -53.04 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.33 Total: -18.55 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.97 -9.65 -42.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034192021.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.680 kcal (2) G-P(sol) polarization free energy of solvation -32.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds