Wall clock time and date at job start Tue Mar 31 2020 10:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.08994 * 109.47052 * 35.00019 * 10 9 7 12 12 C 1.53006 * 109.46692 * 274.99780 * 10 9 7 13 13 C 1.53012 * 109.46635 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46981 * 60.00016 * 13 12 10 15 15 C 1.53001 * 109.47259 * 300.00142 * 14 13 12 16 16 C 1.52995 * 109.47024 * 155.00126 * 10 9 7 17 17 H 1.09002 * 109.47452 * 59.99785 * 16 10 9 18 18 N 1.46495 * 109.47436 * 300.00014 * 16 10 9 19 19 C 1.34770 * 120.00960 * 155.00040 * 18 16 10 20 20 O 1.21290 * 119.99674 * 0.02562 * 19 18 16 21 21 C 1.50701 * 120.00782 * 180.02562 * 19 18 16 22 22 C 1.53001 * 109.47200 * 180.02562 * 21 19 18 23 23 H 1.09007 * 109.47712 * 304.99713 * 22 21 19 24 24 C 1.53087 * 109.47765 * 184.97987 * 22 21 19 25 25 C 1.53183 * 109.16257 * 182.41679 * 24 22 21 26 26 C 1.53183 * 109.04132 * 56.96097 * 25 24 22 27 27 C 1.53089 * 109.16396 * 303.02443 * 26 25 24 28 28 O 1.42897 * 109.41576 * 57.61179 * 27 26 25 29 29 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 31 31 H 1.08994 * 109.47567 * 299.99923 * 12 10 9 32 32 H 1.08991 * 109.47054 * 60.00626 * 12 10 9 33 33 H 1.08999 * 109.46647 * 180.02562 * 13 12 10 34 34 H 1.08999 * 109.47000 * 300.00691 * 13 12 10 35 35 H 1.09002 * 109.47185 * 59.99918 * 14 13 12 36 36 H 1.08998 * 109.47319 * 179.97438 * 14 13 12 37 37 H 1.09002 * 109.47065 * 180.02562 * 15 14 13 38 38 H 1.08993 * 109.47008 * 299.99431 * 15 14 13 39 39 H 0.97002 * 119.99681 * 335.00269 * 18 16 10 40 40 H 1.08997 * 109.46897 * 299.99837 * 21 19 18 41 41 H 1.09002 * 109.46566 * 59.99847 * 21 19 18 42 42 H 1.09000 * 109.52241 * 302.31070 * 24 22 21 43 43 H 1.08994 * 109.52899 * 62.49799 * 24 22 21 44 44 H 1.08994 * 109.53643 * 297.09416 * 25 24 22 45 45 H 1.09005 * 109.61612 * 176.87516 * 25 24 22 46 46 H 1.09002 * 109.51539 * 183.12011 * 26 25 24 47 47 H 1.08997 * 109.57437 * 62.96356 * 26 25 24 48 48 H 1.08999 * 109.47917 * 297.63060 * 27 26 25 49 49 H 1.09005 * 109.48209 * 177.59439 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9686 -3.5536 0.5765 12 6 2.4217 -4.0280 -1.4525 13 6 3.1873 -5.3528 -1.4594 14 6 2.3106 -6.4516 -0.8553 15 6 1.9467 -6.0802 0.5837 16 6 1.1807 -4.7552 0.5904 17 1 0.2700 -4.8584 0.0004 18 7 0.8323 -4.3998 1.9682 19 6 -0.2856 -4.8995 2.5311 20 8 -1.0032 -5.6440 1.8970 21 6 -0.6443 -4.5334 3.9482 22 6 -1.9489 -5.2301 4.3403 23 1 -2.7256 -4.9808 3.6173 24 6 -2.3788 -4.7621 5.7331 25 6 -3.6521 -5.5084 6.1435 26 6 -3.3859 -7.0161 6.0929 27 6 -2.9172 -7.3967 4.6861 28 8 -1.7480 -6.6448 4.3553 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3880 -0.0068 31 1 1.5111 -4.1311 -2.0425 32 1 3.0467 -3.2455 -1.8827 33 1 3.4468 -5.6170 -2.4846 34 1 4.0980 -5.2492 -0.8695 35 1 1.3998 -6.5551 -1.4451 36 1 2.8557 -7.3954 -0.8606 37 1 1.3225 -6.8633 1.0142 38 1 2.8574 -5.9768 1.1735 39 1 1.4063 -3.8047 2.4755 40 1 0.1534 -4.8526 4.6189 41 1 -0.7718 -3.4535 4.0233 42 1 -1.5854 -4.9743 6.4497 43 1 -2.5753 -3.6902 5.7128 44 1 -4.4594 -5.2574 5.4557 45 1 -3.9338 -5.2217 7.1567 46 1 -4.3027 -7.5559 6.3299 47 1 -2.6132 -7.2750 6.8167 48 1 -3.7067 -7.1758 3.9678 49 1 -2.6854 -8.4614 4.6558 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085166021.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:06:39 Heat of formation + Delta-G solvation = -104.998527 kcal Electronic energy + Delta-G solvation = -26976.698096 eV Core-core repulsion = 23323.402570 eV Total energy + Delta-G solvation = -3653.295525 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.92418 -39.04228 -37.58518 -34.00955 -33.67680 -33.52198 -32.78033 -31.11999 -29.54970 -28.26750 -27.28911 -24.47357 -23.70494 -22.98215 -21.69089 -21.00091 -20.30020 -19.91953 -19.28369 -17.21997 -16.51631 -16.43686 -16.17806 -15.63847 -14.98592 -14.60561 -14.57927 -14.44070 -14.08659 -13.80874 -13.67663 -13.48942 -12.96630 -12.88592 -12.74864 -12.55377 -12.38131 -12.18441 -11.98885 -11.70316 -11.29675 -11.16761 -11.06157 -10.90462 -10.83040 -10.77173 -10.70632 -10.50702 -10.34251 -10.29641 -10.17889 -9.71616 -9.60037 -9.41775 -9.24184 -8.89526 -8.43093 -6.97859 -5.78004 -3.07313 3.16643 3.41209 3.46506 3.47272 3.64271 3.82791 4.55758 4.63890 4.69280 4.74162 4.86052 5.09049 5.12699 5.19185 5.20375 5.26586 5.38643 5.39615 5.52736 5.56198 5.58786 5.63498 5.66675 5.70475 5.77551 5.80583 5.84326 5.89137 5.93029 5.95338 6.01238 6.03081 6.04051 6.16330 6.20201 6.40685 6.50080 6.54751 6.58530 6.63032 6.91072 6.99203 7.16841 7.33148 7.67054 8.07575 8.39475 8.77501 9.51096 10.08340 10.43864 11.43965 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.012028 B = 0.003931 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.291650 B = 7120.788711 C = 9100.060298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.721 5.721 10 C 0.173 3.827 11 H 0.049 0.951 12 C -0.133 4.133 13 C -0.119 4.119 14 C -0.114 4.114 15 C -0.123 4.123 16 C 0.143 3.857 17 H 0.082 0.918 18 N -0.711 5.711 19 C 0.517 3.483 20 O -0.541 6.541 21 C -0.136 4.136 22 C 0.109 3.891 23 H 0.066 0.934 24 C -0.152 4.152 25 C -0.122 4.122 26 C -0.157 4.157 27 C 0.063 3.937 28 O -0.366 6.366 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.401 0.599 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.049 0.951 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.857 -13.625 10.252 17.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.362 5.362 10 C 0.063 3.937 11 H 0.067 0.933 12 C -0.174 4.174 13 C -0.157 4.157 14 C -0.152 4.152 15 C -0.162 4.162 16 C 0.037 3.963 17 H 0.100 0.900 18 N -0.361 5.361 19 C 0.303 3.697 20 O -0.418 6.418 21 C -0.176 4.176 22 C 0.050 3.950 23 H 0.084 0.916 24 C -0.190 4.190 25 C -0.159 4.159 26 C -0.194 4.194 27 C -0.014 4.014 28 O -0.285 6.285 29 H 0.065 0.935 30 H 0.218 0.782 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.236 0.764 40 H 0.115 0.885 41 H 0.127 0.873 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.067 0.933 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.096 -14.065 9.769 17.253 hybrid contribution 0.181 1.473 0.273 1.509 sum -1.915 -12.593 10.041 16.219 Atomic orbital electron populations 1.69663 1.05074 1.25697 1.57396 1.24722 0.95430 0.97558 1.02982 0.86312 0.78526 0.83769 0.77805 1.21349 1.21785 1.21332 1.19171 0.90878 0.84070 1.43012 0.91292 1.42406 1.05799 0.99476 1.88517 1.20463 0.93936 0.85820 0.93521 0.93261 1.22218 0.99897 0.95504 0.99782 1.21580 0.98519 0.95715 0.99910 1.21470 0.99835 0.97931 0.95936 1.21872 0.99951 0.97492 0.96926 1.21240 0.98786 0.93815 0.82435 0.90020 1.45900 1.25486 1.49617 1.15085 1.20341 0.80775 0.80170 0.88433 1.90668 1.50806 1.36265 1.64106 1.21729 0.98579 1.02207 0.95102 1.21741 0.96505 0.81579 0.95131 0.91601 1.22241 0.98241 1.00718 0.97777 1.21573 0.97705 0.94991 1.01679 1.22216 1.01723 0.96691 0.98817 1.22477 0.88653 0.96093 0.94146 1.87972 1.33401 1.16817 1.90298 0.93501 0.78151 0.92505 0.91703 0.92763 0.92433 0.92043 0.92491 0.91890 0.92191 0.76449 0.88538 0.87335 0.91045 0.90616 0.91761 0.91610 0.91224 0.91251 0.93299 0.89292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.48 13.06 55.49 0.72 -26.75 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 3 Si 0.90 21.84 29.55 -169.99 -5.02 16.81 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.37 9.93 -15.06 -0.15 -6.51 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.36 16 9 N -0.72 -17.27 4.95 -53.42 -0.26 -17.54 16 10 C 0.17 3.30 2.29 -67.93 -0.16 3.15 16 11 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 12 C -0.13 -2.35 5.50 -26.72 -0.15 -2.50 16 13 C -0.12 -1.68 5.92 -26.73 -0.16 -1.84 16 14 C -0.11 -1.55 5.92 -26.73 -0.16 -1.71 16 15 C -0.12 -1.84 5.50 -26.70 -0.15 -1.99 16 16 C 0.14 2.49 1.98 -67.91 -0.13 2.36 16 17 H 0.08 1.65 7.58 -51.93 -0.39 1.25 16 18 N -0.71 -11.84 4.91 -53.78 -0.26 -12.10 16 19 C 0.52 8.84 7.68 -10.99 -0.08 8.75 16 20 O -0.54 -11.03 15.08 -8.83 -0.13 -11.17 16 21 C -0.14 -1.81 5.41 -27.88 -0.15 -1.96 16 22 C 0.11 1.44 2.19 -26.69 -0.06 1.38 16 23 H 0.07 0.98 7.96 -51.93 -0.41 0.56 16 24 C -0.15 -1.55 5.42 -26.59 -0.14 -1.70 16 25 C -0.12 -1.11 6.03 -26.54 -0.16 -1.27 16 26 C -0.16 -1.41 6.14 -26.59 -0.16 -1.57 16 27 C 0.06 0.71 6.84 37.20 0.25 0.97 16 28 O -0.37 -5.29 9.64 -49.61 -0.48 -5.77 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.38 10.17 7.80 -40.82 -0.32 9.86 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.40 6.26 8.60 -40.82 -0.35 5.91 16 40 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 383.47 15.07 5.78 5.78 Total: -1.00 -31.25 383.47 -10.36 -41.61 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: -9.05 Total: 13.96 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -1.65 Total: -4.85 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: 0.20 Total: -56.39 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.61 Total: -16.93 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.25 -10.36 -41.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085166021.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.385 kcal (2) G-P(sol) polarization free energy of solvation -31.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds