Wall clock time and date at job start Tue Mar 31 2020 09:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86791 * 120.00301 * 2 1 4 4 H 1.48500 * 109.47287 * 239.99958 * 3 2 1 5 5 H 1.48500 * 109.47197 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47285 * 119.99787 * 3 2 1 7 7 C 1.38816 * 119.99379 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99684 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00336 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99862 * 174.60377 * 9 7 2 11 11 C 1.52998 * 110.01806 * 301.46367 * 10 9 7 12 12 N 1.46507 * 109.46896 * 303.90004 * 11 10 9 13 13 C 1.34775 * 119.99693 * 175.12991 * 12 11 10 14 14 O 1.21283 * 120.00321 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.99772 * 180.02562 * 13 12 11 16 16 C 1.53003 * 109.47471 * 179.97438 * 15 13 12 17 17 H 1.09002 * 109.51603 * 54.86955 * 16 15 13 18 18 C 1.53172 * 109.52497 * 174.99728 * 16 15 13 19 19 C 1.53181 * 109.03368 * 176.88725 * 18 16 15 20 20 C 1.53082 * 109.16450 * 303.01778 * 19 18 16 21 21 O 1.42904 * 109.41512 * 57.61304 * 20 19 18 22 22 C 1.42910 * 114.09586 * 298.83943 * 21 20 19 23 23 C 1.54268 * 110.07102 * 62.88083 * 10 9 7 24 24 C 1.54885 * 104.19593 * 95.69792 * 23 10 9 25 25 C 1.54890 * 102.75084 * 37.94111 * 24 23 10 26 26 C 1.53874 * 110.02903 * 180.02562 * 10 9 7 27 27 H 0.96999 * 119.99661 * 0.02562 * 1 2 3 28 28 H 0.96996 * 119.99812 * 354.60015 * 9 7 2 29 29 H 1.09006 * 109.46940 * 183.90761 * 11 10 9 30 30 H 1.08993 * 109.47628 * 63.90094 * 11 10 9 31 31 H 0.96994 * 119.99910 * 355.13076 * 12 11 10 32 32 H 1.09004 * 109.47483 * 59.99840 * 15 13 12 33 33 H 1.09007 * 109.47241 * 299.99961 * 15 13 12 34 34 H 1.08995 * 109.54684 * 296.75445 * 18 16 15 35 35 H 1.08998 * 109.54506 * 57.02186 * 18 16 15 36 36 H 1.09000 * 109.52338 * 62.93142 * 19 18 16 37 37 H 1.09006 * 109.51631 * 183.05201 * 19 18 16 38 38 H 1.09001 * 109.48085 * 177.59107 * 20 19 18 39 39 H 1.09004 * 109.48469 * 297.61869 * 20 19 18 40 40 H 1.08998 * 109.47795 * 301.17171 * 22 21 20 41 41 H 1.08999 * 109.47760 * 181.13663 * 22 21 20 42 42 H 1.09006 * 110.48223 * 214.37474 * 23 10 9 43 43 H 1.08999 * 110.49093 * 337.01343 * 23 10 9 44 44 H 1.09009 * 110.75554 * 279.62401 * 24 23 10 45 45 H 1.09006 * 110.91867 * 156.32939 * 24 23 10 46 46 H 1.09003 * 110.48418 * 203.38196 * 25 24 23 47 47 H 1.08992 * 110.60064 * 80.79291 * 25 24 23 48 48 H 1.08998 * 110.03436 * 359.95265 * 26 10 9 49 49 H 1.09009 * 110.02902 * 121.38902 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0531 -3.6541 -0.1182 11 6 2.8623 -3.6733 -1.4166 12 7 1.9681 -3.4364 -2.5527 13 6 2.4756 -3.3119 -3.7950 14 8 3.6725 -3.3954 -3.9724 15 6 1.5560 -3.0676 -4.9636 16 6 2.3801 -2.9654 -6.2487 17 1 2.9964 -3.8578 -6.3580 18 6 1.4398 -2.8422 -7.4515 19 6 2.2755 -2.6624 -8.7226 20 6 3.1771 -1.4357 -8.5619 21 8 4.0037 -1.6016 -7.4081 22 6 3.2778 -1.7270 -6.1835 23 6 2.9914 -3.8410 1.0920 24 6 2.1741 -4.7158 2.0747 25 6 1.4382 -5.6965 1.1284 26 6 1.0656 -4.8338 -0.0939 27 1 -0.4849 0.8401 -0.0004 28 1 0.3587 -2.3899 0.0792 29 1 3.3443 -4.6444 -1.5299 30 1 3.6218 -2.8923 -1.3830 31 1 1.0110 -3.3692 -2.4108 32 1 1.0096 -2.1373 -4.8079 33 1 0.8498 -3.8937 -5.0492 34 1 0.8363 -3.7458 -7.5366 35 1 0.7885 -1.9784 -7.3181 36 1 2.8904 -3.5481 -8.8825 37 1 1.6133 -2.5196 -9.5766 38 1 3.8050 -1.3278 -9.4464 39 1 2.5607 -0.5446 -8.4427 40 1 2.6628 -0.8397 -6.0330 41 1 3.9782 -1.8290 -5.3546 42 1 3.9039 -4.3558 0.7912 43 1 3.2272 -2.8777 1.5443 44 1 1.4610 -4.1079 2.6316 45 1 2.8327 -5.2561 2.7548 46 1 0.5403 -6.0873 1.6073 47 1 2.0978 -6.5124 0.8332 48 1 0.0450 -4.4645 0.0071 49 1 1.1622 -5.4205 -1.0076 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753679677.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:52:01 Heat of formation + Delta-G solvation = -98.915917 kcal Electronic energy + Delta-G solvation = -27115.251527 eV Core-core repulsion = 23462.219764 eV Total energy + Delta-G solvation = -3653.031764 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.93050 -38.95025 -38.00663 -34.39052 -34.01408 -33.30233 -32.04817 -30.67431 -28.47357 -28.23997 -26.98805 -24.96404 -24.40859 -23.27190 -22.40078 -20.52169 -20.04795 -19.57884 -18.55713 -17.01354 -16.66511 -16.26893 -16.13275 -15.62803 -15.19426 -15.03876 -14.68911 -14.38763 -14.22573 -14.13162 -13.75127 -13.33672 -12.96457 -12.80962 -12.64250 -12.54058 -12.35460 -12.05793 -11.57152 -11.46356 -11.26017 -11.10303 -10.93041 -10.80678 -10.76621 -10.74198 -10.65328 -10.54740 -10.26085 -10.25226 -10.14824 -9.88025 -9.66032 -9.40774 -9.27639 -8.91594 -8.38352 -7.03059 -5.82741 -3.11545 3.11248 3.41559 3.46160 3.48382 3.71686 3.99764 4.55148 4.69412 4.76662 4.77130 4.91191 5.08321 5.10232 5.12518 5.21437 5.25209 5.45178 5.48650 5.54435 5.57465 5.59444 5.67437 5.71653 5.75348 5.76894 5.85598 5.92594 5.93408 5.95210 5.98239 6.07488 6.17012 6.24859 6.29690 6.34128 6.36558 6.44070 6.55640 6.60837 6.75937 6.81660 7.00376 7.12430 7.29880 7.68812 8.10260 8.36060 8.75604 9.47906 10.01737 10.37158 11.39230 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011836 B = 0.004228 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.089009 B = 6620.486094 C = 8177.106429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.008 4.008 3 Si 0.900 3.100 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.232 4.232 8 H 0.069 0.931 9 N -0.711 5.711 10 C 0.189 3.811 11 C 0.120 3.880 12 N -0.700 5.700 13 C 0.508 3.492 14 O -0.555 6.555 15 C -0.137 4.137 16 C -0.103 4.103 17 H 0.085 0.915 18 C -0.119 4.119 19 C -0.154 4.154 20 C 0.056 3.944 21 O -0.381 6.381 22 C 0.061 3.939 23 C -0.132 4.132 24 C -0.117 4.117 25 C -0.121 4.121 26 C -0.125 4.125 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.401 0.599 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.047 0.953 40 H 0.045 0.955 41 H 0.115 0.885 42 H 0.052 0.948 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.054 0.946 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.068 0.932 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.043 -9.598 -10.219 14.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.204 4.204 3 Si 0.731 3.269 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.363 4.363 8 H 0.087 0.913 9 N -0.352 5.352 10 C 0.097 3.903 11 C -0.006 4.006 12 N -0.349 5.349 13 C 0.294 3.706 14 O -0.434 6.434 15 C -0.177 4.177 16 C -0.122 4.122 17 H 0.104 0.896 18 C -0.157 4.157 19 C -0.192 4.192 20 C -0.021 4.021 21 O -0.300 6.300 22 C -0.016 4.016 23 C -0.172 4.172 24 C -0.155 4.155 25 C -0.158 4.158 26 C -0.164 4.164 27 H 0.064 0.936 28 H 0.219 0.781 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.236 0.764 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.133 0.867 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.087 0.913 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.095 -9.498 -10.346 14.087 hybrid contribution -0.733 1.110 0.160 1.340 sum 0.361 -8.388 -10.186 13.200 Atomic orbital electron populations 1.69641 1.04992 1.25705 1.57716 1.24666 0.95394 0.97447 1.02883 0.86377 0.78659 0.83869 0.77979 1.21280 1.21793 1.21281 1.19042 0.90973 0.83849 1.42443 0.91346 1.42538 1.05943 0.99452 1.87280 1.20457 0.91291 0.87141 0.91430 1.21858 0.93204 0.99445 0.86118 1.45753 1.11392 1.71445 1.06268 1.20505 0.89136 0.76611 0.84380 1.90632 1.15989 1.51538 1.85261 1.21669 0.98643 1.04309 0.93067 1.21500 0.96759 1.00974 0.92959 0.89616 1.21673 0.97641 1.02274 0.94097 1.22169 0.99082 0.99834 0.98095 1.22558 0.93921 0.96300 0.89306 1.87973 1.33397 1.93572 1.15012 1.22905 0.96422 0.95253 0.86989 1.22827 0.97334 1.00278 0.96792 1.22382 0.98774 0.97069 0.97227 1.22285 0.99592 0.97623 0.96341 1.22412 0.99825 0.96358 0.97756 0.93558 0.78149 0.93273 0.91537 0.76378 0.88696 0.89024 0.91451 0.91665 0.91118 0.91123 0.89338 0.93446 0.93718 0.86707 0.92932 0.90312 0.91436 0.92742 0.92401 0.92302 0.91334 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.37 13.07 55.49 0.73 -25.65 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.90 22.00 29.55 -169.99 -5.02 16.97 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.23 -5.91 8.39 -15.06 -0.13 -6.04 16 8 H 0.07 1.77 7.23 -52.48 -0.38 1.39 16 9 N -0.71 -15.66 4.76 -46.20 -0.22 -15.88 16 10 C 0.19 3.35 0.68 -130.70 -0.09 3.26 16 11 C 0.12 2.17 3.99 -4.04 -0.02 2.16 16 12 N -0.70 -11.89 5.10 -60.29 -0.31 -12.20 16 13 C 0.51 8.61 7.56 -10.99 -0.08 8.52 16 14 O -0.55 -11.10 13.99 5.55 0.08 -11.02 16 15 C -0.14 -1.78 5.18 -27.88 -0.14 -1.93 16 16 C -0.10 -1.34 2.03 -90.48 -0.18 -1.52 16 17 H 0.09 1.23 7.95 -51.93 -0.41 0.82 16 18 C -0.12 -1.23 5.31 -26.55 -0.14 -1.37 16 19 C -0.15 -1.49 6.14 -26.60 -0.16 -1.65 16 20 C 0.06 0.62 6.84 37.20 0.25 0.88 16 21 O -0.38 -5.74 10.77 -35.23 -0.38 -6.12 16 22 C 0.06 0.92 5.84 37.20 0.22 1.14 16 23 C -0.13 -2.25 5.94 -25.07 -0.15 -2.40 16 24 C -0.12 -1.73 6.91 -24.74 -0.17 -1.90 16 25 C -0.12 -1.61 6.83 -25.12 -0.17 -1.78 16 26 C -0.13 -1.87 5.80 -25.66 -0.15 -2.01 16 27 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.38 9.07 7.28 -40.82 -0.30 8.77 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.40 7.49 -51.93 -0.39 1.02 16 31 H 0.40 6.53 7.99 -40.82 -0.33 6.20 16 32 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.09 0.97 8.14 -51.92 -0.42 0.55 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.12 2.06 6.04 -51.93 -0.31 1.74 16 42 H 0.05 0.82 7.85 -51.93 -0.41 0.41 16 43 H 0.08 1.54 7.12 -51.93 -0.37 1.17 16 44 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.07 1.06 7.44 -51.93 -0.39 0.67 16 49 H 0.06 0.83 7.55 -51.92 -0.39 0.44 16 LS Contribution 377.73 15.07 5.69 5.69 Total: -1.00 -29.55 377.73 -9.37 -38.93 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: -8.73 Total: 14.23 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -1.21 Total: -4.96 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: 0.20 Total: -53.72 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.30 Total: -17.14 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.55 -9.37 -38.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753679677.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.988 kcal (2) G-P(sol) polarization free energy of solvation -29.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds