Wall clock time and date at job start Tue Mar 31 2020 10:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00097 * 2 1 4 4 H 1.08993 * 110.05823 * 331.42115 * 3 2 1 5 5 C 1.53873 * 110.02814 * 92.84056 * 3 2 1 6 6 C 1.54462 * 106.68551 * 119.44553 * 5 3 2 7 7 C 1.54888 * 104.10408 * 23.33839 * 6 5 3 8 8 H 1.08995 * 110.75539 * 80.70806 * 7 6 5 9 9 C 1.50701 * 110.75657 * 203.89819 * 7 6 5 10 10 O 1.21274 * 120.00146 * 116.06391 * 9 7 6 11 11 N 1.34780 * 119.99507 * 296.05918 * 9 7 6 12 12 C 1.46501 * 119.99348 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.46204 * 60.03024 * 12 11 9 14 14 C 1.53044 * 109.45773 * 180.02562 * 12 11 9 15 15 C 1.53194 * 109.31228 * 58.65766 * 14 12 11 16 16 N 1.46923 * 108.77818 * 54.63278 * 15 14 12 17 17 C 1.36935 * 120.63428 * 126.37017 * 16 15 14 18 18 H 1.08004 * 119.99447 * 332.24644 * 17 16 15 19 19 C 1.38804 * 120.00356 * 152.24690 * 17 16 15 20 20 N 1.31621 * 119.99830 * 335.24358 * 19 17 16 21 21 Si 1.86805 * 120.00146 * 155.52481 * 19 17 16 22 22 H 1.48497 * 109.47162 * 179.72076 * 21 19 17 23 23 H 1.48501 * 109.46645 * 299.72075 * 21 19 17 24 24 H 1.48500 * 109.47160 * 59.72200 * 21 19 17 25 25 C 1.46924 * 118.73831 * 306.64529 * 16 15 14 26 26 C 1.52763 * 109.00800 * 53.30883 * 25 16 15 27 27 C 1.54264 * 110.03299 * 210.00325 * 3 2 1 28 28 H 1.09001 * 109.47680 * 59.99390 * 1 2 3 29 29 H 1.09008 * 109.47281 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46847 * 299.99350 * 1 2 3 31 31 H 1.09007 * 110.02776 * 238.56550 * 5 3 2 32 32 H 1.08997 * 110.03352 * 359.94839 * 5 3 2 33 33 H 1.09000 * 110.40560 * 264.75165 * 6 5 3 34 34 H 1.09004 * 110.66463 * 142.05081 * 6 5 3 35 35 H 0.96993 * 120.00430 * 0.02562 * 11 9 7 36 36 H 1.08998 * 109.47212 * 179.97438 * 13 12 11 37 37 H 1.08994 * 109.46962 * 299.97245 * 13 12 11 38 38 H 1.09001 * 109.47033 * 59.96748 * 13 12 11 39 39 H 1.08996 * 109.49642 * 298.70477 * 14 12 11 40 40 H 1.09001 * 109.52139 * 178.62338 * 14 12 11 41 41 H 1.09006 * 109.58170 * 294.84730 * 15 14 12 42 42 H 1.09001 * 109.70242 * 174.49537 * 15 14 12 43 43 H 0.96997 * 120.00123 * 354.51593 * 20 19 17 44 44 H 1.09002 * 109.59010 * 173.13891 * 25 16 15 45 45 H 1.08994 * 109.59213 * 293.56747 * 25 16 15 46 46 H 1.09003 * 109.56839 * 185.55247 * 26 25 16 47 47 H 1.09000 * 109.36153 * 65.49814 * 26 25 16 48 48 H 1.09002 * 110.48561 * 98.43027 * 27 3 2 49 49 H 1.09001 * 110.59908 * 335.84179 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3409 2.0126 -0.4898 5 6 2.2900 1.7577 1.4439 6 6 3.8130 1.9939 1.5474 7 6 4.2540 2.2589 0.0865 8 1 4.0469 3.2903 -0.1985 9 6 5.7153 1.9394 -0.0966 10 8 6.0515 1.0444 -0.8427 11 7 6.6485 2.6484 0.5689 12 6 8.0692 2.3382 0.3905 13 6 8.4492 2.5169 -1.0807 14 6 8.9095 3.2827 1.2530 15 6 8.5023 3.1250 2.7214 16 7 8.6139 1.7081 3.0936 17 6 9.3528 1.3287 4.1823 18 1 10.1883 1.9325 4.5047 19 6 9.0282 0.1683 4.8713 20 7 7.7990 -0.3002 4.8288 21 14 10.3341 -0.7240 5.8653 22 1 9.7353 -1.9221 6.5066 23 1 11.4393 -1.1437 4.9667 24 1 10.8656 0.1845 6.9129 25 6 7.9225 0.7053 2.2719 26 6 8.3318 0.8905 0.8118 27 6 3.3717 1.2777 -0.7247 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.7564 2.6846 1.6548 32 1 1.9816 0.9819 2.1446 33 1 4.3093 1.1068 1.9408 34 1 4.0262 2.8605 2.1733 35 1 6.3796 3.3640 1.1659 36 1 9.5062 2.2866 -1.2136 37 1 7.8507 1.8441 -1.6949 38 1 8.2611 3.5475 -1.3819 39 1 8.7397 4.3119 0.9369 40 1 9.9654 3.0368 1.1399 41 1 7.4724 3.4573 2.8526 42 1 9.1618 3.7215 3.3518 43 1 7.1021 0.2061 4.3829 44 1 8.2016 -0.2947 2.6040 45 1 6.8446 0.8361 2.3658 46 1 7.7508 0.2172 0.1816 47 1 9.3929 0.6667 0.7028 48 1 3.2637 1.6228 -1.7530 49 1 3.7975 0.2745 -0.7027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045483721.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:10 Heat of formation + Delta-G solvation = -75.498351 kcal Electronic energy + Delta-G solvation = -27882.468016 eV Core-core repulsion = 24230.451714 eV Total energy + Delta-G solvation = -3652.016302 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.39917 -38.93162 -37.47164 -35.67908 -34.58373 -32.04630 -30.89941 -29.95967 -28.91767 -28.43341 -27.29515 -26.24048 -23.94453 -22.69174 -22.32030 -20.91290 -20.43973 -19.72750 -18.64465 -17.60208 -17.31618 -16.50436 -15.94264 -15.13815 -15.10407 -14.68798 -14.39175 -14.17103 -14.08448 -13.70855 -13.49615 -13.44236 -13.30250 -13.05668 -12.48239 -12.21255 -12.03034 -11.98116 -11.77231 -11.67747 -11.60825 -11.48505 -11.17539 -11.11502 -10.82734 -10.69000 -10.59259 -10.55486 -10.38633 -10.08120 -9.99598 -9.82307 -9.69695 -9.29627 -9.03459 -8.61403 -8.33713 -6.83587 -6.03277 -3.19722 2.94762 3.38298 3.50973 3.55408 3.72996 3.76681 4.38449 4.46747 4.62341 4.81924 4.96962 5.12289 5.14022 5.19022 5.25266 5.29203 5.34245 5.38346 5.40798 5.43222 5.45481 5.48527 5.59817 5.64467 5.81463 5.88124 5.91631 5.98586 6.05212 6.06728 6.13082 6.16792 6.24997 6.32921 6.36367 6.45639 6.60448 6.65123 6.74247 6.80016 7.02755 7.13618 7.16544 7.29787 7.89900 8.03110 8.58603 8.61455 9.15462 9.88428 10.33462 11.25202 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014035 B = 0.004275 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.511076 B = 6548.341287 C = 7813.456254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.380 6.380 3 C 0.084 3.916 4 H 0.063 0.937 5 C -0.145 4.145 6 C -0.110 4.110 7 C -0.115 4.115 8 H 0.098 0.902 9 C 0.524 3.476 10 O -0.537 6.537 11 N -0.711 5.711 12 C 0.184 3.816 13 C -0.159 4.159 14 C -0.137 4.137 15 C 0.149 3.851 16 N -0.597 5.597 17 C -0.352 4.352 18 H 0.054 0.946 19 C -0.022 4.022 20 N -0.914 5.914 21 Si 1.063 2.937 22 H -0.286 1.286 23 H -0.294 1.294 24 H -0.293 1.293 25 C 0.159 3.841 26 C -0.146 4.146 27 C -0.099 4.099 28 H 0.039 0.961 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.396 0.604 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.046 0.954 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.012 0.988 42 H 0.056 0.944 43 H 0.269 0.731 44 H 0.075 0.925 45 H 0.015 0.985 46 H 0.074 0.926 47 H 0.061 0.939 48 H 0.072 0.928 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.123 8.368 -10.768 17.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.299 6.299 3 C 0.026 3.974 4 H 0.081 0.919 5 C -0.183 4.183 6 C -0.148 4.148 7 C -0.136 4.136 8 H 0.116 0.884 9 C 0.310 3.690 10 O -0.415 6.415 11 N -0.362 5.362 12 C 0.098 3.902 13 C -0.218 4.218 14 C -0.177 4.177 15 C 0.022 3.978 16 N -0.321 5.321 17 C -0.481 4.481 18 H 0.072 0.928 19 C -0.225 4.225 20 N -0.554 5.554 21 Si 0.893 3.107 22 H -0.211 1.211 23 H -0.221 1.221 24 H -0.221 1.221 25 C 0.033 3.967 26 C -0.185 4.185 27 C -0.137 4.137 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.230 0.770 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.029 0.971 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.033 0.967 46 H 0.092 0.908 47 H 0.079 0.921 48 H 0.091 0.909 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.442 6.194 -10.339 15.947 hybrid contribution -0.594 2.153 -0.549 2.300 sum -11.037 8.347 -10.888 17.608 Atomic orbital electron populations 1.22771 0.81543 1.02648 0.99674 1.88006 1.19229 1.27727 1.94916 1.22846 0.94903 0.84352 0.95309 0.91903 1.22703 0.96623 1.01638 0.97336 1.22315 0.95257 1.03037 0.94143 1.22240 0.92357 1.01031 0.97981 0.88400 1.20245 0.87287 0.81659 0.79798 1.90620 1.82181 1.30732 1.37941 1.46110 1.06416 1.37071 1.46590 1.20242 0.79331 0.96376 0.94204 1.22213 1.01676 1.01335 0.96532 1.22321 1.00189 0.97200 0.97952 1.20835 0.97167 0.87763 0.91988 1.44099 1.59329 0.99328 1.29374 1.19947 1.09023 1.12097 1.07012 0.92811 1.25806 0.99869 0.98349 0.98445 1.70779 0.99962 1.42889 1.41751 0.83554 0.74915 0.76456 0.75773 1.21105 1.22086 1.22061 1.20755 0.93859 0.94706 0.87377 1.22386 1.01466 0.94857 0.99839 1.22238 0.92295 1.01439 0.97761 0.94263 0.89764 0.94171 0.91401 0.90304 0.90206 0.90807 0.76952 0.92292 0.90729 0.93495 0.92605 0.90729 0.97065 0.92597 0.92049 0.90713 0.96723 0.90788 0.92059 0.90917 0.88711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.85 101.05 1.10 1.36 16 2 O -0.38 -4.83 10.26 -35.23 -0.36 -5.19 16 3 C 0.08 0.93 3.39 -25.62 -0.09 0.84 16 4 H 0.06 0.57 7.81 -51.93 -0.41 0.16 16 5 C -0.15 -1.59 6.62 -25.51 -0.17 -1.75 16 6 C -0.11 -1.37 6.27 -24.97 -0.16 -1.53 16 7 C -0.11 -1.40 3.28 -89.78 -0.29 -1.69 16 8 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 9 C 0.52 8.19 6.56 -10.98 -0.07 8.12 16 10 O -0.54 -10.10 11.97 5.56 0.07 -10.03 16 11 N -0.71 -10.78 4.08 -47.57 -0.19 -10.98 16 12 C 0.18 3.09 0.66 -131.78 -0.09 3.00 16 13 C -0.16 -2.42 8.40 37.16 0.31 -2.11 16 14 C -0.14 -2.26 4.96 -26.61 -0.13 -2.39 16 15 C 0.15 2.96 6.25 -3.71 -0.02 2.94 16 16 N -0.60 -14.69 2.85 -172.58 -0.49 -15.18 16 17 C -0.35 -9.78 9.49 -15.06 -0.14 -9.92 16 18 H 0.05 1.50 7.94 -52.48 -0.42 1.08 16 19 C -0.02 -0.64 4.69 -17.43 -0.08 -0.72 16 20 N -0.91 -27.55 12.42 55.49 0.69 -26.86 16 21 Si 1.06 25.48 29.98 -169.99 -5.10 20.38 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.16 3.80 4.41 -3.93 -0.02 3.78 16 26 C -0.15 -2.97 4.65 -26.83 -0.12 -3.10 16 27 C -0.10 -1.25 5.62 -25.07 -0.14 -1.39 16 28 H 0.04 0.29 8.10 -51.93 -0.42 -0.13 16 29 H 0.08 0.66 8.14 -51.92 -0.42 0.23 16 30 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.94 7.95 -51.93 -0.41 0.53 16 33 H 0.08 1.25 8.04 -51.93 -0.42 0.84 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.40 5.35 7.27 -40.82 -0.30 5.05 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 1.25 6.17 -51.93 -0.32 0.93 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.01 0.22 6.94 -51.93 -0.36 -0.14 16 42 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 43 H 0.27 8.16 6.69 -40.82 -0.27 7.88 16 44 H 0.07 2.07 6.31 -51.93 -0.33 1.74 16 45 H 0.01 0.36 7.46 -51.93 -0.39 -0.03 16 46 H 0.07 1.58 6.20 -51.93 -0.32 1.25 16 47 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 48 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.09 1.48 7.41 -51.93 -0.38 1.10 16 LS Contribution 370.74 15.07 5.59 5.59 Total: -1.00 -32.29 370.74 -8.53 -40.82 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -8.60 Total: 6.01 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -0.12 Total: -4.56 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.00 Total: -53.01 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.29 Total: -15.22 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.10 Total: 20.38 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.29 -8.53 -40.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045483721.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.683 kcal (2) G-P(sol) polarization free energy of solvation -32.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds