Wall clock time and date at job start Tue Mar 31 2020 09:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50697 * 109.62451 * 2 1 4 4 O 1.21286 * 119.99804 * 94.67033 * 3 2 1 5 5 N 1.34769 * 120.00028 * 274.66236 * 3 2 1 6 6 C 1.46503 * 120.00008 * 185.15453 * 5 3 2 7 7 H 1.09004 * 110.88343 * 37.43034 * 6 5 3 8 8 C 1.54913 * 111.00584 * 273.55012 * 6 5 3 9 9 N 1.47418 * 104.83434 * 204.87825 * 8 6 5 10 10 C 1.36940 * 125.65006 * 203.86228 * 9 8 6 11 11 H 1.07992 * 119.99635 * 354.94852 * 10 9 8 12 12 C 1.38806 * 119.99901 * 174.94412 * 10 9 8 13 13 N 1.31623 * 120.00577 * 354.86520 * 12 10 9 14 14 Si 1.86801 * 120.00011 * 174.86886 * 12 10 9 15 15 H 1.48503 * 109.47409 * 94.99487 * 14 12 10 16 16 H 1.48493 * 109.47455 * 215.00076 * 14 12 10 17 17 H 1.48506 * 109.47032 * 334.99856 * 14 12 10 18 18 C 1.47029 * 108.70268 * 24.12499 * 9 8 6 19 19 C 1.54321 * 107.26791 * 358.94581 * 18 9 8 20 20 H 1.08996 * 110.72102 * 96.17025 * 19 18 9 21 21 O 1.42906 * 110.71520 * 219.44071 * 19 18 9 22 22 C 1.50472 * 109.78926 * 120.48978 * 2 1 3 23 23 C 1.54058 * 112.49927 * 213.95306 * 22 2 1 24 24 C 1.54074 * 112.81762 * 318.28554 * 23 22 2 25 25 C 1.50464 * 112.49502 * 318.28193 * 24 23 22 26 26 C 1.54247 * 108.52575 * 94.14995 * 25 24 23 27 27 C 1.45544 * 112.40265 * 280.01423 * 26 25 24 28 28 H 1.08994 * 109.47289 * 59.99614 * 1 2 3 29 29 H 1.09003 * 109.47282 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46919 * 299.99528 * 1 2 3 31 31 H 0.97005 * 120.00158 * 5.16066 * 5 3 2 32 32 H 1.09002 * 110.36822 * 86.03703 * 8 6 5 33 33 H 1.09001 * 110.36313 * 323.71467 * 8 6 5 34 34 H 0.96993 * 120.00452 * 179.97438 * 13 12 10 35 35 H 1.09003 * 109.87740 * 118.35874 * 18 9 8 36 36 H 1.08998 * 109.88226 * 239.52529 * 18 9 8 37 37 H 0.96703 * 114.00058 * 293.52249 * 21 19 18 38 38 H 1.09002 * 108.87665 * 334.73323 * 22 2 1 39 39 H 1.09000 * 108.87833 * 93.17335 * 22 2 1 40 40 H 1.09000 * 108.81570 * 197.42398 * 23 22 2 41 41 H 1.09001 * 108.81758 * 79.14476 * 23 22 2 42 42 H 1.08998 * 108.87918 * 197.50306 * 24 23 22 43 43 H 1.08999 * 108.79438 * 79.00310 * 24 23 22 44 44 H 1.09001 * 109.62986 * 334.43851 * 25 24 23 45 45 H 1.09002 * 109.63196 * 213.85908 * 25 24 23 46 46 H 1.09002 * 108.89696 * 159.25789 * 26 25 24 47 47 H 1.08994 * 108.89131 * 40.76323 * 26 25 24 48 48 H 1.08998 * 108.89462 * 301.17814 * 27 26 25 49 49 H 1.08997 * 108.81449 * 182.63421 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0362 1.4194 0.0000 4 8 2.3204 1.9619 1.0469 5 7 2.1731 2.0860 -1.1633 6 6 2.7705 3.4237 -1.1751 7 1 3.5849 3.4919 -0.4538 8 6 1.7006 4.5120 -0.9092 9 7 2.2432 5.7342 -1.5298 10 6 1.9146 7.0180 -1.1845 11 1 1.1416 7.1992 -0.4525 12 6 2.5752 8.0862 -1.7754 13 7 3.5848 7.8662 -2.5908 14 14 2.0316 9.8363 -1.4134 15 1 2.8575 10.3936 -0.3122 16 1 2.2023 10.6696 -2.6306 17 1 0.6025 9.8372 -1.0095 18 6 3.1908 5.3465 -2.5850 19 6 3.2552 3.8047 -2.5989 20 1 2.5853 3.3975 -3.3562 21 8 4.5951 3.3566 -2.8135 22 6 2.0395 -0.7184 1.2201 23 6 3.3500 -0.1120 1.7570 24 6 4.3399 0.2590 0.6362 25 6 4.4043 -0.7862 -0.4443 26 6 3.4262 -0.3892 -1.5690 27 6 2.0481 -0.7349 -1.2532 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8761 1.6801 -1.9927 32 1 1.5663 4.6582 0.1625 33 1 0.7552 4.2367 -1.3769 34 1 4.0462 8.6126 -3.0040 35 1 2.8403 5.7116 -3.5503 36 1 4.1768 5.7568 -2.3668 37 1 4.9457 3.5700 -3.6892 38 1 1.2813 -0.6676 2.0015 39 1 2.2126 -1.7643 0.9669 40 1 3.8253 -0.8340 2.4210 41 1 3.1138 0.7855 2.3286 42 1 5.3330 0.3807 1.0687 43 1 4.0302 1.2055 0.1932 44 1 4.1175 -1.7546 -0.0345 45 1 5.4176 -0.8395 -0.8424 46 1 3.7170 -0.9007 -2.4866 47 1 3.4921 0.6866 -1.7306 48 1 1.9836 -1.8097 -1.0841 49 1 1.4166 -0.4731 -2.1022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077149607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:38:37 Heat of formation + Delta-G solvation = -53.199172 kcal Electronic energy + Delta-G solvation = -28523.146828 eV Core-core repulsion = 24872.097491 eV Total energy + Delta-G solvation = -3651.049337 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.37958 -38.32545 -36.82192 -35.06978 -34.41925 -33.75007 -32.24000 -31.39919 -28.39608 -27.80154 -27.05555 -24.73165 -24.54889 -23.57147 -21.97251 -20.58482 -20.36055 -19.67641 -19.09859 -17.06231 -16.88313 -16.20135 -15.85999 -15.73380 -15.13593 -14.94652 -14.50438 -14.13507 -14.07424 -13.48216 -13.37514 -13.17871 -13.01768 -12.75285 -12.66192 -12.53741 -12.29806 -12.13101 -11.92320 -11.66542 -11.36931 -11.26603 -11.18468 -10.83759 -10.81957 -10.74730 -10.56412 -10.33670 -10.27771 -10.15036 -10.06402 -9.89236 -9.83993 -9.43654 -9.04433 -8.70758 -8.53094 -6.88881 -5.74357 -3.10766 2.92019 3.36393 3.40100 3.45153 3.47180 4.42842 4.43918 4.50572 4.62506 4.70991 4.93898 5.09066 5.13596 5.20347 5.25087 5.33986 5.39065 5.39928 5.44590 5.53055 5.57935 5.61893 5.68351 5.81693 5.83444 5.87480 5.93405 5.94931 6.07108 6.11874 6.12004 6.14678 6.14974 6.27831 6.33159 6.36894 6.48861 6.64865 6.66953 6.73251 6.95850 7.24904 7.53163 7.71774 7.78804 8.11220 8.20156 8.53560 9.15655 9.76417 10.39689 11.35831 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.022422 B = 0.003924 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.491434 B = 7134.027446 C = 7558.476680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.076 4.076 3 C 0.535 3.465 4 O -0.531 6.531 5 N -0.718 5.718 6 C 0.141 3.859 7 H 0.100 0.900 8 C 0.130 3.870 9 N -0.599 5.599 10 C -0.228 4.228 11 H 0.080 0.920 12 C -0.007 4.007 13 N -0.922 5.922 14 Si 0.914 3.086 15 H -0.288 1.288 16 H -0.290 1.290 17 H -0.280 1.280 18 C 0.149 3.851 19 C 0.070 3.930 20 H 0.055 0.945 21 O -0.561 6.561 22 C -0.094 4.094 23 C -0.119 4.119 24 C -0.136 4.136 25 C -0.112 4.112 26 C -0.149 4.149 27 C -0.106 4.106 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.396 0.604 32 H 0.051 0.949 33 H 0.022 0.978 34 H 0.253 0.747 35 H 0.036 0.964 36 H 0.074 0.926 37 H 0.376 0.624 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.045 0.955 41 H 0.091 0.909 42 H 0.052 0.948 43 H 0.078 0.922 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.088 0.912 48 H 0.068 0.932 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.456 -20.224 0.156 20.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.080 4.080 3 C 0.322 3.678 4 O -0.408 6.408 5 N -0.370 5.370 6 C 0.036 3.964 7 H 0.118 0.882 8 C 0.003 3.997 9 N -0.327 5.327 10 C -0.356 4.356 11 H 0.098 0.902 12 C -0.203 4.203 13 N -0.570 5.570 14 Si 0.744 3.256 15 H -0.215 1.215 16 H -0.216 1.216 17 H -0.206 1.206 18 C 0.024 3.976 19 C 0.009 3.991 20 H 0.073 0.927 21 O -0.366 6.366 22 C -0.132 4.132 23 C -0.157 4.157 24 C -0.173 4.173 25 C -0.149 4.149 26 C -0.186 4.186 27 C -0.144 4.144 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.231 0.769 32 H 0.069 0.931 33 H 0.039 0.961 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.092 0.908 37 H 0.222 0.778 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.109 0.891 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.106 0.894 48 H 0.087 0.913 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.242 -19.824 1.468 20.005 hybrid contribution -0.293 0.944 -0.975 1.389 sum -2.535 -18.880 0.492 19.056 Atomic orbital electron populations 1.21851 0.92282 1.02514 1.02795 1.20620 0.96857 0.92695 0.97784 1.20178 0.76604 0.87431 0.83593 1.90660 1.49900 1.69230 1.31016 1.46230 1.63247 1.17998 1.09509 1.22206 0.96423 0.80904 0.96916 0.88188 1.21861 0.93805 0.86355 0.97687 1.44247 1.49354 1.00518 1.38542 1.19087 1.15580 0.80606 1.20362 0.90220 1.24817 0.97659 0.98070 0.99784 1.69918 1.22883 1.29733 1.34436 0.86072 0.78053 0.84239 0.77242 1.21524 1.21636 1.20585 1.21871 0.96712 0.86587 0.92479 1.23405 0.82901 0.97734 0.95016 0.92712 1.86472 1.29427 1.81808 1.38913 1.21199 0.97829 0.98468 0.95671 1.22057 0.93870 1.01619 0.98106 1.21656 0.99111 1.00107 0.96424 1.21289 0.98809 0.98911 0.95907 1.20913 0.94635 1.04435 0.98630 1.20572 0.97096 1.00460 0.96245 0.92093 0.91551 0.91758 0.76903 0.93078 0.96050 0.93702 0.94625 0.90777 0.77757 0.91850 0.91951 0.93646 0.89072 0.92886 0.90364 0.92231 0.92333 0.92216 0.89430 0.91307 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.15 37.16 0.30 -0.99 16 2 C -0.08 -0.84 0.73 -156.27 -0.11 -0.95 16 3 C 0.53 7.84 3.30 -10.99 -0.04 7.80 16 4 O -0.53 -9.73 12.19 5.55 0.07 -9.66 16 5 N -0.72 -10.40 3.19 -51.73 -0.17 -10.56 16 6 C 0.14 2.61 2.99 -65.78 -0.20 2.41 16 7 H 0.10 2.15 7.81 -51.93 -0.41 1.75 16 8 C 0.13 2.81 6.93 -2.53 -0.02 2.79 16 9 N -0.60 -15.36 3.39 -170.07 -0.58 -15.94 16 10 C -0.23 -6.42 10.27 -15.06 -0.15 -6.57 16 11 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 12 C -0.01 -0.20 5.46 -17.43 -0.10 -0.29 16 13 N -0.92 -26.81 10.41 55.49 0.58 -26.23 16 14 Si 0.91 22.16 29.56 -169.99 -5.02 17.13 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 18 C 0.15 3.52 5.20 -3.06 -0.02 3.50 16 19 C 0.07 1.25 3.95 -24.90 -0.10 1.16 16 20 H 0.06 0.87 8.00 -51.93 -0.42 0.45 16 21 O -0.56 -9.39 13.39 -35.23 -0.47 -9.86 16 22 C -0.09 -1.03 4.62 -27.44 -0.13 -1.16 16 23 C -0.12 -1.54 5.06 -25.62 -0.13 -1.67 16 24 C -0.14 -1.85 5.15 -27.44 -0.14 -1.99 16 25 C -0.11 -1.25 5.61 -27.35 -0.15 -1.41 16 26 C -0.15 -1.57 5.08 -29.59 -0.15 -1.72 16 27 C -0.11 -0.97 3.80 -29.60 -0.11 -1.09 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.67 8.11 -51.92 -0.42 0.25 16 31 H 0.40 4.77 6.87 -40.82 -0.28 4.49 16 32 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.04 0.90 7.90 -51.93 -0.41 0.49 16 36 H 0.07 1.99 6.88 -51.93 -0.36 1.63 16 37 H 0.38 4.79 9.12 45.56 0.42 5.20 16 38 H 0.06 0.68 7.69 -51.93 -0.40 0.28 16 39 H 0.06 0.58 6.63 -51.93 -0.34 0.24 16 40 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.09 1.42 6.06 -51.93 -0.31 1.11 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.08 1.28 4.16 -51.93 -0.22 1.06 16 44 H 0.06 0.60 6.98 -51.93 -0.36 0.24 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.09 1.11 4.49 -51.93 -0.23 0.87 16 48 H 0.07 0.55 7.47 -51.93 -0.39 0.16 16 49 H 0.06 0.50 7.63 -51.93 -0.40 0.10 16 LS Contribution 356.83 15.07 5.38 5.38 Total: -1.00 -31.88 356.83 -8.91 -40.79 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -7.46 Total: 9.15 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -1.24 Total: -0.19 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.17 Total: -52.74 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.40 Total: -19.52 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.88 -8.91 -40.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077149607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.408 kcal (2) G-P(sol) polarization free energy of solvation -31.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds