Wall clock time and date at job start Tue Mar 31 2020 09:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50697 * 109.62451 * 2 1 4 4 O 1.21286 * 119.99804 * 94.67033 * 3 2 1 5 5 N 1.34769 * 120.00028 * 274.66236 * 3 2 1 6 6 C 1.46503 * 120.00008 * 185.15453 * 5 3 2 7 7 H 1.09004 * 110.88343 * 37.43034 * 6 5 3 8 8 C 1.54913 * 111.00584 * 273.55012 * 6 5 3 9 9 N 1.47418 * 104.83434 * 204.87825 * 8 6 5 10 10 C 1.36940 * 125.65006 * 203.86228 * 9 8 6 11 11 H 1.07992 * 119.99635 * 354.94852 * 10 9 8 12 12 C 1.38806 * 119.99901 * 174.94412 * 10 9 8 13 13 N 1.31623 * 120.00577 * 354.86520 * 12 10 9 14 14 Si 1.86801 * 120.00011 * 174.86886 * 12 10 9 15 15 H 1.48503 * 109.47409 * 94.99487 * 14 12 10 16 16 H 1.48493 * 109.47455 * 215.00076 * 14 12 10 17 17 H 1.48506 * 109.47032 * 334.99856 * 14 12 10 18 18 C 1.47029 * 108.70268 * 24.12499 * 9 8 6 19 19 C 1.54321 * 107.26791 * 358.94581 * 18 9 8 20 20 H 1.08996 * 110.72102 * 96.17025 * 19 18 9 21 21 O 1.42906 * 110.71520 * 219.44071 * 19 18 9 22 22 C 1.50472 * 109.78926 * 120.48978 * 2 1 3 23 23 C 1.54058 * 112.49927 * 213.95306 * 22 2 1 24 24 C 1.54074 * 112.81762 * 318.28554 * 23 22 2 25 25 C 1.50464 * 112.49502 * 318.28193 * 24 23 22 26 26 C 1.54247 * 108.52575 * 94.14995 * 25 24 23 27 27 C 1.45544 * 112.40265 * 280.01423 * 26 25 24 28 28 H 1.08994 * 109.47289 * 59.99614 * 1 2 3 29 29 H 1.09003 * 109.47282 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46919 * 299.99528 * 1 2 3 31 31 H 0.97005 * 120.00158 * 5.16066 * 5 3 2 32 32 H 1.09002 * 110.36822 * 86.03703 * 8 6 5 33 33 H 1.09001 * 110.36313 * 323.71467 * 8 6 5 34 34 H 0.96993 * 120.00452 * 179.97438 * 13 12 10 35 35 H 1.09003 * 109.87740 * 118.35874 * 18 9 8 36 36 H 1.08998 * 109.88226 * 239.52529 * 18 9 8 37 37 H 0.96703 * 114.00058 * 293.52249 * 21 19 18 38 38 H 1.09002 * 108.87665 * 334.73323 * 22 2 1 39 39 H 1.09000 * 108.87833 * 93.17335 * 22 2 1 40 40 H 1.09000 * 108.81570 * 197.42398 * 23 22 2 41 41 H 1.09001 * 108.81758 * 79.14476 * 23 22 2 42 42 H 1.08998 * 108.87918 * 197.50306 * 24 23 22 43 43 H 1.08999 * 108.79438 * 79.00310 * 24 23 22 44 44 H 1.09001 * 109.62986 * 334.43851 * 25 24 23 45 45 H 1.09002 * 109.63196 * 213.85908 * 25 24 23 46 46 H 1.09002 * 108.89696 * 159.25789 * 26 25 24 47 47 H 1.08994 * 108.89131 * 40.76323 * 26 25 24 48 48 H 1.08998 * 108.89462 * 301.17814 * 27 26 25 49 49 H 1.08997 * 108.81449 * 182.63421 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0362 1.4194 0.0000 4 8 2.3204 1.9619 1.0469 5 7 2.1731 2.0860 -1.1633 6 6 2.7705 3.4237 -1.1751 7 1 3.5849 3.4919 -0.4538 8 6 1.7006 4.5120 -0.9092 9 7 2.2432 5.7342 -1.5298 10 6 1.9146 7.0180 -1.1845 11 1 1.1416 7.1992 -0.4525 12 6 2.5752 8.0862 -1.7754 13 7 3.5848 7.8662 -2.5908 14 14 2.0316 9.8363 -1.4134 15 1 2.8575 10.3936 -0.3122 16 1 2.2023 10.6696 -2.6306 17 1 0.6025 9.8372 -1.0095 18 6 3.1908 5.3465 -2.5850 19 6 3.2552 3.8047 -2.5989 20 1 2.5853 3.3975 -3.3562 21 8 4.5951 3.3566 -2.8135 22 6 2.0395 -0.7184 1.2201 23 6 3.3500 -0.1120 1.7570 24 6 4.3399 0.2590 0.6362 25 6 4.4043 -0.7862 -0.4443 26 6 3.4262 -0.3892 -1.5690 27 6 2.0481 -0.7349 -1.2532 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8761 1.6801 -1.9927 32 1 1.5663 4.6582 0.1625 33 1 0.7552 4.2367 -1.3769 34 1 4.0462 8.6126 -3.0040 35 1 2.8403 5.7116 -3.5503 36 1 4.1768 5.7568 -2.3668 37 1 4.9457 3.5700 -3.6892 38 1 1.2813 -0.6676 2.0015 39 1 2.2126 -1.7643 0.9669 40 1 3.8253 -0.8340 2.4210 41 1 3.1138 0.7855 2.3286 42 1 5.3330 0.3807 1.0687 43 1 4.0302 1.2055 0.1932 44 1 4.1175 -1.7546 -0.0345 45 1 5.4176 -0.8395 -0.8424 46 1 3.7170 -0.9007 -2.4866 47 1 3.4921 0.6866 -1.7306 48 1 1.9836 -1.8097 -1.0841 49 1 1.4166 -0.4731 -2.1022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077149607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:38:36 Heat of formation + Delta-G solvation = -75.761886 kcal Electronic energy + Delta-G solvation = -28524.125221 eV Core-core repulsion = 24872.097491 eV Total energy + Delta-G solvation = -3652.027730 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.44071 -39.87551 -37.96861 -36.66466 -35.83187 -34.69509 -33.77387 -32.77579 -30.18234 -28.80732 -28.59765 -26.49859 -25.47599 -24.69470 -23.04564 -22.35871 -21.81595 -20.76286 -20.24698 -19.00118 -18.31813 -17.41518 -17.22326 -16.82789 -16.54352 -16.16558 -15.82324 -15.72425 -15.36900 -14.77251 -14.64919 -14.46556 -14.13943 -14.09958 -13.91194 -13.74440 -13.54026 -13.30276 -13.18273 -13.01803 -12.81233 -12.76218 -12.73844 -12.47294 -12.17329 -12.07417 -11.89607 -11.63656 -11.53481 -11.40997 -11.25277 -11.18617 -11.02716 -10.94404 -10.79315 -10.25052 -9.87257 -8.96879 -7.89023 -5.28576 1.44191 1.45983 1.55331 1.78012 2.14879 2.47121 3.12673 3.29994 3.54451 3.55333 3.65073 3.86065 3.90238 4.03878 4.04629 4.15679 4.22232 4.25648 4.35007 4.42269 4.49578 4.53847 4.55790 4.60256 4.82253 4.83650 4.85948 4.99464 5.00856 5.06339 5.10613 5.16492 5.28722 5.29175 5.30260 5.35243 5.36708 5.41027 5.42950 5.45711 5.55732 5.65372 5.66769 5.70728 6.13678 6.64087 6.87128 7.03066 7.40105 7.67974 8.30656 9.18982 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.022422 B = 0.003924 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.491434 B = 7134.027446 C = 7558.476680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.070 4.070 3 C 0.531 3.469 4 O -0.575 6.575 5 N -0.704 5.704 6 C 0.160 3.840 7 H 0.063 0.937 8 C 0.132 3.868 9 N -0.621 5.621 10 C -0.250 4.250 11 H 0.079 0.921 12 C -0.059 4.059 13 N -0.946 5.946 14 Si 0.980 3.020 15 H -0.289 1.289 16 H -0.288 1.288 17 H -0.269 1.269 18 C 0.156 3.844 19 C 0.094 3.906 20 H 0.093 0.907 21 O -0.565 6.565 22 C -0.094 4.094 23 C -0.118 4.118 24 C -0.135 4.135 25 C -0.109 4.109 26 C -0.147 4.147 27 C -0.104 4.104 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.046 0.954 31 H 0.412 0.588 32 H 0.028 0.972 33 H 0.040 0.960 34 H 0.249 0.751 35 H 0.016 0.984 36 H 0.033 0.967 37 H 0.395 0.605 38 H 0.063 0.937 39 H 0.092 0.908 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.039 0.961 43 H 0.048 0.952 44 H 0.079 0.921 45 H 0.057 0.943 46 H 0.079 0.921 47 H 0.063 0.937 48 H 0.095 0.905 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.886 -23.145 -1.131 23.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.074 4.074 3 C 0.321 3.679 4 O -0.454 6.454 5 N -0.357 5.357 6 C 0.053 3.947 7 H 0.081 0.919 8 C 0.005 3.995 9 N -0.348 5.348 10 C -0.379 4.379 11 H 0.096 0.904 12 C -0.253 4.253 13 N -0.595 5.595 14 Si 0.807 3.193 15 H -0.216 1.216 16 H -0.214 1.214 17 H -0.193 1.193 18 C 0.030 3.970 19 C 0.034 3.966 20 H 0.111 0.889 21 O -0.373 6.373 22 C -0.131 4.131 23 C -0.155 4.155 24 C -0.173 4.173 25 C -0.146 4.146 26 C -0.184 4.184 27 C -0.142 4.142 28 H 0.086 0.914 29 H 0.114 0.886 30 H 0.065 0.935 31 H 0.251 0.749 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.034 0.966 36 H 0.051 0.949 37 H 0.245 0.755 38 H 0.082 0.918 39 H 0.110 0.890 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.057 0.943 43 H 0.066 0.934 44 H 0.098 0.902 45 H 0.076 0.924 46 H 0.097 0.903 47 H 0.081 0.919 48 H 0.113 0.887 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.687 -22.792 0.155 23.089 hybrid contribution 0.221 1.859 -0.498 1.938 sum -3.465 -20.933 -0.343 21.221 Atomic orbital electron populations 1.21879 0.90712 1.04339 1.02362 1.20694 0.97941 0.89596 0.99127 1.21046 0.75412 0.88871 0.82618 1.90669 1.51589 1.70517 1.32632 1.46006 1.62941 1.16151 1.10612 1.21596 0.94480 0.82339 0.96293 0.91921 1.21934 0.95313 0.86125 0.96133 1.44518 1.49843 1.01014 1.39453 1.19432 1.15751 0.82228 1.20459 0.90352 1.25652 0.97857 1.01888 0.99881 1.70132 1.23711 1.30443 1.35191 0.85053 0.78080 0.79288 0.76836 1.21560 1.21401 1.19331 1.21693 0.93990 0.90527 0.90807 1.23074 0.84399 0.93601 0.95538 0.88914 1.86447 1.28821 1.81210 1.40808 1.21253 0.96401 0.99731 0.95759 1.21986 0.95202 1.00489 0.97847 1.21640 0.98420 0.99804 0.97390 1.21284 0.99353 0.98704 0.95292 1.20887 0.95434 1.03070 0.99050 1.20615 0.96245 1.01629 0.95677 0.91377 0.88559 0.93466 0.74927 0.95407 0.94225 0.94133 0.96634 0.94882 0.75493 0.91821 0.88998 0.92336 0.92732 0.94261 0.93389 0.90248 0.92430 0.90252 0.91861 0.88661 0.89718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.15 71.98 0.59 -1.52 16 2 C -0.07 -1.35 0.73 -53.32 -0.04 -1.39 16 3 C 0.53 15.32 3.30 87.66 0.29 15.60 16 4 O -0.57 -22.01 12.19 -3.05 -0.04 -22.05 16 5 N -0.70 -19.70 3.19 -435.96 -1.39 -21.09 16 6 C 0.16 6.03 2.99 46.38 0.14 6.17 16 7 H 0.06 2.87 7.81 -2.39 -0.02 2.85 16 8 C 0.13 5.82 6.93 86.86 0.60 6.42 16 9 N -0.62 -32.92 3.39 -691.99 -2.35 -35.27 16 10 C -0.25 -14.49 10.27 84.03 0.86 -13.62 16 11 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 12 C -0.06 -3.42 5.46 84.86 0.46 -2.95 16 13 N -0.95 -56.80 10.41 21.65 0.23 -56.57 16 14 Si 0.98 46.36 29.56 68.60 2.03 48.39 16 15 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 16 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 C 0.16 7.57 5.20 86.73 0.45 8.02 16 19 C 0.09 3.35 3.95 31.78 0.13 3.48 16 20 H 0.09 2.67 8.00 -2.39 -0.02 2.65 16 21 O -0.57 -18.51 13.39 -148.98 -1.99 -20.50 16 22 C -0.09 -1.82 4.62 30.13 0.14 -1.69 16 23 C -0.12 -3.02 5.06 31.32 0.16 -2.86 16 24 C -0.13 -3.69 5.15 30.14 0.16 -3.54 16 25 C -0.11 -2.19 5.61 30.20 0.17 -2.02 16 26 C -0.15 -2.59 5.08 28.74 0.15 -2.45 16 27 C -0.10 -1.42 3.80 28.74 0.11 -1.31 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.05 0.90 8.11 -2.38 -0.02 0.88 16 31 H 0.41 8.78 6.87 -92.70 -0.64 8.14 16 32 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 35 H 0.02 0.80 7.90 -2.39 -0.02 0.79 16 36 H 0.03 1.87 6.88 -2.39 -0.02 1.85 16 37 H 0.40 9.54 9.12 -74.06 -0.68 8.87 16 38 H 0.06 1.24 7.69 -2.39 -0.02 1.22 16 39 H 0.09 1.28 6.63 -2.39 -0.02 1.26 16 40 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.05 1.80 6.06 -2.39 -0.01 1.79 16 42 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.05 1.62 4.16 -2.39 -0.01 1.61 16 44 H 0.08 1.29 6.98 -2.39 -0.02 1.27 16 45 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.06 1.45 4.49 -2.39 -0.01 1.44 16 48 H 0.09 0.91 7.47 -2.39 -0.02 0.89 16 49 H 0.08 0.86 7.63 -2.39 -0.02 0.84 16 Total: -1.00 -74.34 356.83 0.48 -73.85 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: -0.35 Total: 26.90 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 4.36 Total: 6.34 kcal Atomic # 7 Polarization: -109.41 SS G_CDS: -3.52 Total: -112.93 kcal Atomic # 8 Polarization: -40.52 SS G_CDS: -2.03 Total: -42.55 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -74.34 0.48 -73.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077149607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.909 kcal (2) G-P(sol) polarization free energy of solvation -74.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds