Wall clock time and date at job start Tue Mar 31 2020 10:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47508 * 2 1 4 4 C 1.52997 * 109.47365 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47043 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47043 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.47330 * 180.02562 * 6 5 4 8 8 C 1.34777 * 120.00358 * 180.02562 * 7 6 5 9 9 O 1.21280 * 119.99998 * 0.02562 * 8 7 6 10 10 C 1.50703 * 119.99781 * 179.97438 * 8 7 6 11 11 H 1.09001 * 109.49684 * 59.93869 * 10 8 7 12 12 C 1.53044 * 109.49232 * 179.97438 * 10 8 7 13 13 C 1.53046 * 109.53554 * 181.35444 * 12 10 8 14 14 C 1.53196 * 109.30818 * 298.63322 * 13 12 10 15 15 N 1.46926 * 108.77728 * 54.64005 * 14 13 12 16 16 C 1.34769 * 120.63374 * 126.36393 * 15 14 13 17 17 O 1.21684 * 120.00001 * 175.13142 * 16 15 14 18 18 C 1.46377 * 119.99877 * 355.13614 * 16 15 14 19 19 H 1.07998 * 119.99939 * 20.44917 * 18 16 15 20 20 C 1.40045 * 119.99959 * 200.44531 * 18 16 15 21 21 N 1.30672 * 119.99899 * 18.45061 * 20 18 16 22 22 Si 1.86798 * 120.00073 * 198.44918 * 20 18 16 23 23 H 1.48503 * 109.47291 * 90.00039 * 22 20 18 24 24 H 1.48499 * 109.47159 * 329.99934 * 22 20 18 25 25 H 1.48507 * 109.47082 * 209.99903 * 22 20 18 26 26 C 1.46933 * 118.73353 * 306.64145 * 15 14 13 27 27 H 1.08999 * 109.46821 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47228 * 300.00333 * 1 2 3 29 29 H 1.09002 * 109.46619 * 59.99928 * 1 2 3 30 30 H 1.08997 * 109.47228 * 239.99667 * 2 1 3 31 31 H 1.09007 * 109.47052 * 119.99940 * 2 1 3 32 32 H 1.09003 * 109.46785 * 59.99818 * 3 2 1 33 33 H 1.08998 * 109.46823 * 300.00321 * 3 2 1 34 34 H 1.09003 * 109.47029 * 60.00321 * 4 3 2 35 35 H 1.08993 * 109.47268 * 300.00270 * 4 3 2 36 36 H 1.09003 * 109.46849 * 60.00330 * 5 4 3 37 37 H 1.09002 * 109.47498 * 300.00007 * 5 4 3 38 38 H 1.09003 * 109.47029 * 60.00440 * 6 5 4 39 39 H 1.08998 * 109.47702 * 300.00257 * 6 5 4 40 40 H 0.97002 * 119.99645 * 359.97438 * 7 6 5 41 41 H 1.09000 * 109.46146 * 61.33072 * 12 10 8 42 42 H 1.09007 * 109.46223 * 301.37100 * 12 10 8 43 43 H 1.09003 * 109.49391 * 178.68306 * 13 12 10 44 44 H 1.08995 * 109.50100 * 58.58498 * 13 12 10 45 45 H 1.09000 * 109.58421 * 294.84801 * 14 13 12 46 46 H 1.09003 * 109.70029 * 174.49450 * 14 13 12 47 47 H 0.97001 * 120.00177 * 5.78543 * 21 20 18 48 48 H 1.08998 * 109.58194 * 173.14887 * 26 15 14 49 49 H 1.08998 * 109.58366 * 293.56686 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.6101 2.8849 0.0013 7 7 6.0985 4.2661 0.0013 8 6 7.4236 4.5124 0.0018 9 8 8.2117 3.5905 0.0018 10 6 7.9258 5.9332 0.0012 11 1 7.5614 6.4483 0.8900 12 6 9.4563 5.9338 0.0026 13 6 9.9674 7.3760 0.0361 14 6 9.4847 8.1138 -1.2167 15 7 8.0229 7.9936 -1.3026 16 6 7.2497 9.0906 -1.4250 17 8 6.0490 8.9739 -1.5841 18 6 7.8543 10.4224 -1.3665 19 1 8.9104 10.5448 -1.5567 20 6 7.0634 11.5378 -1.0641 21 7 5.9004 11.3778 -0.4901 22 14 7.6708 13.2543 -1.4813 23 1 7.2234 13.6188 -2.8496 24 1 9.1543 13.2825 -1.4216 25 1 7.1175 14.2262 -0.5042 26 6 7.4197 6.6549 -1.2462 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9338 0.9285 -0.8892 35 1 3.9330 0.9287 0.8908 36 1 3.7164 3.3993 0.8896 37 1 3.7172 3.3983 -0.8904 38 1 5.9741 2.3704 -0.8881 39 1 5.9727 2.3717 0.8919 40 1 5.4681 5.0034 0.0002 41 1 9.8205 5.4403 -0.8984 42 1 9.8189 5.3996 0.8809 43 1 11.0572 7.3752 0.0607 44 1 9.5834 7.8776 0.9243 45 1 9.9406 7.6687 -2.1011 46 1 9.7617 9.1661 -1.1531 47 1 5.6212 10.4962 -0.1974 48 1 6.3345 6.7450 -1.1997 49 1 7.7037 6.0886 -2.1332 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153702778.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:01 Heat of formation + Delta-G solvation = -126.347389 kcal Electronic energy + Delta-G solvation = -25771.596163 eV Core-core repulsion = 22117.374881 eV Total energy + Delta-G solvation = -3654.221282 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.07203 -38.34540 -36.98132 -35.95897 -34.97428 -32.64471 -32.53902 -31.85979 -30.79941 -28.26094 -26.27181 -24.77573 -23.94648 -23.11469 -21.59118 -21.39471 -20.92396 -19.93655 -19.10360 -17.49759 -16.50639 -16.39010 -16.02534 -15.58182 -15.41845 -14.86020 -14.37741 -14.28860 -13.89464 -13.85439 -13.72571 -13.48430 -13.36060 -13.19397 -12.92908 -12.61483 -12.50096 -12.05666 -11.92909 -11.81759 -11.80722 -11.49820 -11.25196 -11.12029 -11.05199 -10.93644 -10.84690 -10.79543 -10.56018 -10.37925 -10.25667 -10.17955 -10.03872 -9.62830 -9.06681 -8.79357 -7.81962 -7.54040 -6.79678 -4.73810 2.73934 3.21116 3.26898 3.28933 3.46237 4.09824 4.36253 4.39325 4.41853 4.56294 4.66523 4.81149 4.86606 4.95547 5.01572 5.07308 5.14235 5.18059 5.35683 5.43404 5.45946 5.48920 5.51522 5.52619 5.59433 5.61898 5.65826 5.71442 5.79778 5.81668 5.92550 5.94135 6.03216 6.04312 6.07853 6.16974 6.27551 6.28736 6.32934 6.44822 6.51356 6.70767 7.36078 7.52766 7.84791 7.97187 8.29655 8.32478 8.80154 9.32793 10.25121 10.51696 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014989 B = 0.002642 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.565521 B =10596.196260 C =12234.057089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.116 4.116 5 C -0.134 4.134 6 C 0.119 3.881 7 N -0.733 5.733 8 C 0.525 3.475 9 O -0.546 6.546 10 C -0.122 4.122 11 H 0.098 0.902 12 C -0.093 4.093 13 C -0.134 4.134 14 C 0.119 3.881 15 N -0.636 5.636 16 C 0.560 3.440 17 O -0.621 6.621 18 C -0.615 4.615 19 H 0.072 0.928 20 C 0.053 3.947 21 N -0.808 5.808 22 Si 1.076 2.924 23 H -0.279 1.279 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.133 3.867 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.405 0.595 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.043 0.957 46 H 0.097 0.903 47 H 0.302 0.698 48 H 0.085 0.915 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.241 -16.628 2.953 17.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.154 4.154 5 C -0.172 4.172 6 C -0.004 4.004 7 N -0.386 5.386 8 C 0.311 3.689 9 O -0.423 6.423 10 C -0.145 4.145 11 H 0.116 0.884 12 C -0.131 4.131 13 C -0.173 4.173 14 C -0.005 4.005 15 N -0.371 5.371 16 C 0.369 3.631 17 O -0.510 6.510 18 C -0.651 4.651 19 H 0.090 0.910 20 C -0.170 4.170 21 N -0.437 5.437 22 Si 0.900 3.100 23 H -0.205 1.205 24 H -0.206 1.206 25 H -0.205 1.205 26 C 0.008 3.992 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.239 0.761 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.061 0.939 46 H 0.115 0.885 47 H 0.116 0.884 48 H 0.104 0.896 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.757 -15.807 2.893 16.305 hybrid contribution 0.204 -1.468 0.015 1.482 sum -2.553 -17.275 2.908 17.703 Atomic orbital electron populations 1.21784 0.95937 1.01510 1.01893 1.21540 0.95843 0.96965 1.01969 1.21628 0.95117 0.96784 1.02338 1.21502 0.95556 0.95894 1.02433 1.21832 0.94203 0.97976 1.03176 1.21327 0.93680 0.83291 1.02121 1.46118 1.07542 1.08896 1.76008 1.20725 0.81863 0.91498 0.74791 1.90651 1.55424 1.46546 1.49683 1.21717 0.98490 0.92007 1.02272 0.88432 1.21276 0.92315 0.96851 1.02634 1.21965 1.00103 0.95305 0.99923 1.21485 0.81643 1.02042 0.95369 1.48040 1.05878 1.04725 1.78503 1.18415 0.85230 0.83798 0.75651 1.90500 1.16126 1.86870 1.57491 1.21856 0.97938 0.90950 1.54382 0.90993 1.26618 0.93455 1.04792 0.92094 1.70134 1.18563 1.30656 1.24347 0.83519 0.75681 0.73421 0.77337 1.20465 1.20594 1.20507 1.20921 0.99440 0.85063 0.93751 0.92881 0.92751 0.92710 0.92062 0.92098 0.91894 0.91821 0.91679 0.91729 0.91156 0.90996 0.91678 0.91750 0.76050 0.91584 0.91764 0.91333 0.91542 0.93862 0.88483 0.88406 0.89645 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.13 -0.83 5.93 -26.73 -0.16 -0.99 16 3 C -0.12 -0.87 5.21 -26.73 -0.14 -1.01 16 4 C -0.12 -0.87 5.21 -26.73 -0.14 -1.01 16 5 C -0.13 -1.16 5.33 -26.73 -0.14 -1.30 16 6 C 0.12 1.32 5.67 -4.04 -0.02 1.30 16 7 N -0.73 -9.52 5.46 -60.29 -0.33 -9.85 16 8 C 0.52 8.26 7.16 -10.98 -0.08 8.18 16 9 O -0.55 -9.99 15.98 5.56 0.09 -9.90 16 10 C -0.12 -1.99 2.66 -91.88 -0.24 -2.23 16 11 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 12 C -0.09 -1.43 4.46 -26.68 -0.12 -1.55 16 13 C -0.13 -2.08 6.08 -26.61 -0.16 -2.24 16 14 C 0.12 2.19 6.35 -3.71 -0.02 2.16 16 15 N -0.64 -14.01 2.98 -174.69 -0.52 -14.53 16 16 C 0.56 15.27 7.21 -12.99 -0.09 15.18 16 17 O -0.62 -18.85 14.21 5.20 0.07 -18.78 16 18 C -0.62 -16.80 8.62 -35.63 -0.31 -17.10 16 19 H 0.07 1.82 6.02 -52.49 -0.32 1.50 16 20 C 0.05 1.44 5.36 -17.37 -0.09 1.35 16 21 N -0.81 -23.89 13.24 55.55 0.74 -23.15 16 22 Si 1.08 23.05 29.97 -169.99 -5.09 17.96 16 23 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 24 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 25 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 26 C 0.13 2.52 5.53 -3.93 -0.02 2.50 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.40 4.87 8.01 -40.82 -0.33 4.55 16 41 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 42 H 0.06 0.95 8.07 -51.93 -0.42 0.54 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.10 1.89 5.41 -51.93 -0.28 1.61 16 47 H 0.30 9.32 6.56 -40.82 -0.27 9.06 16 48 H 0.09 1.71 6.63 -51.93 -0.34 1.37 16 49 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 389.26 15.07 5.87 5.87 Total: -1.00 -33.33 389.26 -9.34 -42.67 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -8.78 Total: 7.10 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -1.38 Total: 2.62 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -0.11 Total: -47.53 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: 0.16 Total: -28.68 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.09 Total: 17.96 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.33 -9.34 -42.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153702778.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.678 kcal (2) G-P(sol) polarization free energy of solvation -33.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds