Wall clock time and date at job start Tue Mar 31 2020 10:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47508 * 2 1 4 4 C 1.52997 * 109.47365 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47043 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47043 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.47330 * 180.02562 * 6 5 4 8 8 C 1.34777 * 120.00358 * 180.02562 * 7 6 5 9 9 O 1.21280 * 119.99998 * 0.02562 * 8 7 6 10 10 C 1.50703 * 119.99781 * 179.97438 * 8 7 6 11 11 H 1.09001 * 109.49684 * 59.93869 * 10 8 7 12 12 C 1.53044 * 109.49232 * 179.97438 * 10 8 7 13 13 C 1.53046 * 109.53554 * 181.35444 * 12 10 8 14 14 C 1.53196 * 109.30818 * 298.63322 * 13 12 10 15 15 N 1.46926 * 108.77728 * 54.64005 * 14 13 12 16 16 C 1.34769 * 120.63374 * 126.36393 * 15 14 13 17 17 O 1.21684 * 120.00001 * 175.13142 * 16 15 14 18 18 C 1.46377 * 119.99877 * 355.13614 * 16 15 14 19 19 H 1.07998 * 119.99939 * 20.44917 * 18 16 15 20 20 C 1.40045 * 119.99959 * 200.44531 * 18 16 15 21 21 N 1.30672 * 119.99899 * 18.45061 * 20 18 16 22 22 Si 1.86798 * 120.00073 * 198.44918 * 20 18 16 23 23 H 1.48503 * 109.47291 * 90.00039 * 22 20 18 24 24 H 1.48499 * 109.47159 * 329.99934 * 22 20 18 25 25 H 1.48507 * 109.47082 * 209.99903 * 22 20 18 26 26 C 1.46933 * 118.73353 * 306.64145 * 15 14 13 27 27 H 1.08999 * 109.46821 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47228 * 300.00333 * 1 2 3 29 29 H 1.09002 * 109.46619 * 59.99928 * 1 2 3 30 30 H 1.08997 * 109.47228 * 239.99667 * 2 1 3 31 31 H 1.09007 * 109.47052 * 119.99940 * 2 1 3 32 32 H 1.09003 * 109.46785 * 59.99818 * 3 2 1 33 33 H 1.08998 * 109.46823 * 300.00321 * 3 2 1 34 34 H 1.09003 * 109.47029 * 60.00321 * 4 3 2 35 35 H 1.08993 * 109.47268 * 300.00270 * 4 3 2 36 36 H 1.09003 * 109.46849 * 60.00330 * 5 4 3 37 37 H 1.09002 * 109.47498 * 300.00007 * 5 4 3 38 38 H 1.09003 * 109.47029 * 60.00440 * 6 5 4 39 39 H 1.08998 * 109.47702 * 300.00257 * 6 5 4 40 40 H 0.97002 * 119.99645 * 359.97438 * 7 6 5 41 41 H 1.09000 * 109.46146 * 61.33072 * 12 10 8 42 42 H 1.09007 * 109.46223 * 301.37100 * 12 10 8 43 43 H 1.09003 * 109.49391 * 178.68306 * 13 12 10 44 44 H 1.08995 * 109.50100 * 58.58498 * 13 12 10 45 45 H 1.09000 * 109.58421 * 294.84801 * 14 13 12 46 46 H 1.09003 * 109.70029 * 174.49450 * 14 13 12 47 47 H 0.97001 * 120.00177 * 5.78543 * 21 20 18 48 48 H 1.08998 * 109.58194 * 173.14887 * 26 15 14 49 49 H 1.08998 * 109.58366 * 293.56686 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.6101 2.8849 0.0013 7 7 6.0985 4.2661 0.0013 8 6 7.4236 4.5124 0.0018 9 8 8.2117 3.5905 0.0018 10 6 7.9258 5.9332 0.0012 11 1 7.5614 6.4483 0.8900 12 6 9.4563 5.9338 0.0026 13 6 9.9674 7.3760 0.0361 14 6 9.4847 8.1138 -1.2167 15 7 8.0229 7.9936 -1.3026 16 6 7.2497 9.0906 -1.4250 17 8 6.0490 8.9739 -1.5841 18 6 7.8543 10.4224 -1.3665 19 1 8.9104 10.5448 -1.5567 20 6 7.0634 11.5378 -1.0641 21 7 5.9004 11.3778 -0.4901 22 14 7.6708 13.2543 -1.4813 23 1 7.2234 13.6188 -2.8496 24 1 9.1543 13.2825 -1.4216 25 1 7.1175 14.2262 -0.5042 26 6 7.4197 6.6549 -1.2462 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9338 0.9285 -0.8892 35 1 3.9330 0.9287 0.8908 36 1 3.7164 3.3993 0.8896 37 1 3.7172 3.3983 -0.8904 38 1 5.9741 2.3704 -0.8881 39 1 5.9727 2.3717 0.8919 40 1 5.4681 5.0034 0.0002 41 1 9.8205 5.4403 -0.8984 42 1 9.8189 5.3996 0.8809 43 1 11.0572 7.3752 0.0607 44 1 9.5834 7.8776 0.9243 45 1 9.9406 7.6687 -2.1011 46 1 9.7617 9.1661 -1.1531 47 1 5.6212 10.4962 -0.1974 48 1 6.3345 6.7450 -1.1997 49 1 7.7037 6.0886 -2.1332 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153702778.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:00 Heat of formation + Delta-G solvation = -146.918395 kcal Electronic energy + Delta-G solvation = -25772.488189 eV Core-core repulsion = 22117.374881 eV Total energy + Delta-G solvation = -3655.113307 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.42979 -40.03935 -37.96247 -37.51171 -35.92177 -34.68244 -33.76167 -33.20491 -32.14608 -29.09867 -28.20807 -26.00740 -25.41302 -24.28519 -22.51743 -22.38028 -21.88829 -21.43227 -20.62714 -19.20222 -17.98016 -17.49071 -17.18663 -17.02096 -16.72083 -16.17748 -15.68724 -15.57492 -15.39964 -15.03093 -14.92449 -14.70215 -14.62722 -14.40583 -14.04920 -13.85552 -13.72078 -13.46515 -13.34065 -13.19326 -12.62298 -12.59833 -12.48509 -12.44804 -12.11548 -11.93298 -11.85623 -11.82597 -11.79999 -11.73251 -11.61683 -11.56588 -11.38526 -10.92977 -10.84699 -10.19944 -9.91860 -9.36910 -8.93508 -6.90059 1.43424 1.55503 1.57763 1.83674 2.07620 2.32481 2.42837 2.69780 3.36855 3.61189 3.64325 3.69702 3.83828 3.92625 4.03290 4.10927 4.16397 4.20165 4.24851 4.32271 4.41061 4.49757 4.50987 4.58975 4.65774 4.76021 4.78650 4.84614 4.87815 4.89193 4.94941 4.99911 5.02956 5.05539 5.10385 5.16670 5.20672 5.32469 5.35563 5.41073 5.43979 5.49811 5.55038 5.75556 6.08115 6.15632 6.36419 6.77522 7.07053 7.31369 8.16401 8.31883 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014989 B = 0.002642 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.565521 B =10596.196260 C =12234.057089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.112 4.112 5 C -0.126 4.126 6 C 0.119 3.881 7 N -0.725 5.725 8 C 0.527 3.473 9 O -0.570 6.570 10 C -0.114 4.114 11 H 0.094 0.906 12 C -0.088 4.088 13 C -0.123 4.123 14 C 0.111 3.889 15 N -0.637 5.637 16 C 0.546 3.454 17 O -0.663 6.663 18 C -0.635 4.635 19 H 0.090 0.910 20 C 0.004 3.996 21 N -0.839 5.839 22 Si 1.130 2.870 23 H -0.272 1.272 24 H -0.249 1.249 25 H -0.276 1.276 26 C 0.136 3.864 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.409 0.591 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.103 0.897 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.086 0.914 47 H 0.280 0.720 48 H 0.067 0.933 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.732 -16.973 3.012 17.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.163 4.163 3 C -0.157 4.157 4 C -0.150 4.150 5 C -0.164 4.164 6 C -0.004 4.004 7 N -0.376 5.376 8 C 0.314 3.686 9 O -0.449 6.449 10 C -0.136 4.136 11 H 0.112 0.888 12 C -0.126 4.126 13 C -0.162 4.162 14 C -0.011 4.011 15 N -0.371 5.371 16 C 0.354 3.646 17 O -0.555 6.555 18 C -0.670 4.670 19 H 0.108 0.892 20 C -0.211 4.211 21 N -0.468 5.468 22 Si 0.947 3.053 23 H -0.198 1.198 24 H -0.173 1.173 25 H -0.201 1.201 26 C 0.011 3.989 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.245 0.755 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.121 0.879 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.104 0.896 47 H 0.092 0.908 48 H 0.086 0.914 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.224 -16.205 2.960 16.519 hybrid contribution -0.266 -1.479 -0.033 1.503 sum -1.491 -17.684 2.927 17.986 Atomic orbital electron populations 1.21792 0.95718 1.01905 1.01797 1.21538 0.96056 0.96508 1.02187 1.21608 0.94762 0.97222 1.02133 1.21473 0.95781 0.94947 1.02769 1.21779 0.92387 0.98950 1.03260 1.21457 0.95157 0.81892 1.01876 1.46148 1.06841 1.10106 1.74504 1.20546 0.82504 0.90792 0.74790 1.90642 1.56160 1.46926 1.51212 1.21592 0.99455 0.92073 1.00466 0.88826 1.21261 0.91244 0.96895 1.03219 1.21893 1.02094 0.94538 0.97641 1.21722 0.79361 1.02195 0.97840 1.47950 1.07332 1.04697 1.77128 1.18689 0.85044 0.85409 0.75453 1.90459 1.18012 1.87850 1.59197 1.22263 0.99031 0.91468 1.54276 0.89198 1.28422 0.92711 1.09387 0.90536 1.70284 1.20334 1.29107 1.27036 0.82884 0.77007 0.68172 0.77267 1.19761 1.17263 1.20077 1.20964 0.98434 0.83926 0.95542 0.92268 0.92767 0.92905 0.91950 0.91774 0.91945 0.92207 0.91525 0.91230 0.90769 0.91219 0.92127 0.91711 0.75530 0.91458 0.90613 0.87881 0.92591 0.91948 0.89563 0.90815 0.91413 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 71.98 0.71 -1.09 16 2 C -0.13 -1.53 5.93 30.60 0.18 -1.35 16 3 C -0.12 -1.60 5.21 30.59 0.16 -1.45 16 4 C -0.11 -1.55 5.21 30.59 0.16 -1.40 16 5 C -0.13 -2.07 5.33 30.59 0.16 -1.91 16 6 C 0.12 2.54 5.67 86.38 0.49 3.03 16 7 N -0.72 -18.47 5.46 -463.06 -2.53 -21.00 16 8 C 0.53 16.18 7.16 87.66 0.63 16.81 16 9 O -0.57 -20.19 15.98 -3.03 -0.05 -20.23 16 10 C -0.11 -3.60 2.66 -11.61 -0.03 -3.63 16 11 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 12 C -0.09 -2.54 4.46 30.62 0.14 -2.41 16 13 C -0.12 -3.52 6.08 30.68 0.19 -3.34 16 14 C 0.11 3.93 6.35 86.36 0.55 4.48 16 15 N -0.64 -28.05 2.98 -824.83 -2.46 -30.51 16 16 C 0.55 30.36 7.21 86.36 0.62 30.98 16 17 O -0.66 -41.75 14.21 -4.30 -0.06 -41.82 16 18 C -0.63 -34.76 8.62 24.83 0.21 -34.55 16 19 H 0.09 4.46 6.02 -2.91 -0.02 4.45 16 20 C 0.00 0.23 5.36 85.30 0.46 0.69 16 21 N -0.84 -50.88 13.24 21.83 0.29 -50.59 16 22 Si 1.13 45.48 29.97 68.60 2.06 47.54 16 23 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 24 H -0.25 -8.70 7.11 99.48 0.71 -7.99 16 25 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 26 C 0.14 5.14 5.53 86.21 0.48 5.61 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 40 H 0.41 9.84 8.01 -92.71 -0.74 9.10 16 41 H 0.07 1.95 8.13 -2.39 -0.02 1.93 16 42 H 0.08 2.06 8.07 -2.38 -0.02 2.04 16 43 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.09 3.23 5.41 -2.39 -0.01 3.22 16 47 H 0.28 18.06 6.56 -92.71 -0.61 17.45 16 48 H 0.07 2.80 6.63 -2.39 -0.02 2.78 16 49 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -73.20 389.26 2.69 -70.51 By element: Atomic # 1 Polarization: 35.29 SS G_CDS: 0.34 Total: 35.62 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 5.11 Total: 10.49 kcal Atomic # 7 Polarization: -97.41 SS G_CDS: -4.70 Total: -102.10 kcal Atomic # 8 Polarization: -61.94 SS G_CDS: -0.11 Total: -62.05 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.06 Total: 47.54 kcal Total: -73.20 2.69 -70.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153702778.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.410 kcal (2) G-P(sol) polarization free energy of solvation -73.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds