Wall clock time and date at job start Tue Mar 31 2020 11:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46983 * 2 1 4 4 C 1.52997 * 109.47325 * 174.99753 * 3 2 1 5 5 C 1.52995 * 109.47260 * 184.99713 * 4 3 2 6 6 N 1.46497 * 109.47040 * 294.99700 * 3 2 1 7 7 C 1.46770 * 124.34952 * 119.99793 * 6 3 2 8 8 C 1.54480 * 105.47236 * 163.00653 * 7 6 3 9 9 H 1.09002 * 110.96791 * 143.53628 * 8 7 6 10 10 C 1.50705 * 110.96789 * 267.26267 * 8 7 6 11 11 O 1.21280 * 119.99981 * 356.90916 * 10 8 7 12 12 N 1.34779 * 119.99843 * 176.91174 * 10 8 7 13 13 C 1.46502 * 120.00113 * 179.97438 * 12 10 8 14 14 C 1.52996 * 109.47026 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.46859 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.46987 * 179.97438 * 15 14 13 17 17 H 1.07990 * 119.99869 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99769 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99993 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00004 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46777 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47642 * 119.99888 * 20 18 16 23 23 H 1.48506 * 109.47074 * 240.00155 * 20 18 16 24 24 C 1.54628 * 101.76599 * 25.41755 * 8 7 6 25 25 C 1.34424 * 124.35286 * 300.02596 * 6 3 2 26 26 O 1.21280 * 124.93697 * 0.38752 * 25 6 3 27 27 H 1.09003 * 109.47028 * 60.00560 * 1 2 3 28 28 H 1.09000 * 109.46874 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47104 * 300.00210 * 1 2 3 30 30 H 1.08994 * 109.47104 * 239.99790 * 2 1 3 31 31 H 1.09003 * 109.47028 * 119.99440 * 2 1 3 32 32 H 1.09003 * 109.47335 * 54.99545 * 3 2 1 33 33 H 1.09001 * 109.47253 * 305.00100 * 4 3 2 34 34 H 1.09001 * 109.47244 * 64.99505 * 4 3 2 35 35 H 1.08999 * 109.47164 * 60.00289 * 5 4 3 36 36 H 1.09001 * 109.46821 * 179.97438 * 5 4 3 37 37 H 1.08994 * 109.47405 * 299.99993 * 5 4 3 38 38 H 1.09005 * 110.24126 * 44.00714 * 7 6 3 39 39 H 1.08996 * 110.32088 * 282.04737 * 7 6 3 40 40 H 0.96999 * 119.99735 * 359.97438 * 12 10 8 41 41 H 1.08997 * 109.46975 * 300.00636 * 13 12 10 42 42 H 1.09000 * 109.46332 * 60.00179 * 13 12 10 43 43 H 1.08996 * 109.47059 * 299.99867 * 14 13 12 44 44 H 1.09000 * 109.46933 * 60.00252 * 14 13 12 45 45 H 1.09006 * 109.47056 * 300.00405 * 15 14 13 46 46 H 1.08999 * 109.47137 * 59.99740 * 15 14 13 47 47 H 0.97005 * 119.99863 * 179.97438 * 19 18 16 48 48 H 1.08995 * 110.48559 * 93.88283 * 24 8 7 49 49 H 1.08999 * 110.48739 * 216.52271 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4444 0.1258 5 6 4.0644 2.8851 0.2511 6 7 1.6525 2.0974 -1.2518 7 6 0.8075 3.2948 -1.3330 8 6 1.0286 3.8597 -2.7537 9 1 0.1048 4.2751 -3.1564 10 6 2.1278 4.8907 -2.7590 11 8 2.6643 5.2105 -1.7194 12 7 2.5144 5.4575 -3.9191 13 6 3.5825 6.4602 -3.9243 14 6 3.8245 6.9401 -5.3568 15 6 4.9404 7.9868 -5.3623 16 6 5.1792 8.4591 -6.7733 17 1 4.5934 8.0536 -7.5848 18 6 6.1449 9.4096 -7.0280 19 7 6.8573 9.9046 -6.0394 20 14 6.4405 9.9956 -8.7769 21 1 5.5148 9.2893 -9.6985 22 1 6.1984 11.4585 -8.8565 23 1 7.8437 9.7041 -9.1661 24 6 1.4525 2.5938 -3.5339 25 6 2.0246 1.6787 -2.4738 26 8 2.7181 0.7085 -2.6942 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 1.6053 1.9816 0.8418 33 1 3.8570 0.8802 1.0114 34 1 4.0030 0.9836 -0.7595 35 1 3.6263 3.3459 1.1364 36 1 5.1507 2.8863 0.3412 37 1 3.7722 3.4493 -0.6345 38 1 1.1153 4.0250 -0.5845 39 1 -0.2401 3.0291 -1.1915 40 1 2.0855 5.2014 -4.7506 41 1 3.2896 7.3062 -3.3026 42 1 4.4973 6.0185 -3.5293 43 1 4.1172 6.0942 -5.9787 44 1 2.9095 7.3819 -5.7514 45 1 4.6481 8.8328 -4.7400 46 1 5.8552 7.5447 -4.9677 47 1 7.5370 10.5731 -6.2186 48 1 0.5878 2.1319 -4.0103 49 1 2.2121 2.8395 -4.2760 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170904650.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:06 Heat of formation + Delta-G solvation = -103.023020 kcal Electronic energy + Delta-G solvation = -26472.473748 eV Core-core repulsion = 22819.263887 eV Total energy + Delta-G solvation = -3653.209861 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.24243 -39.27371 -36.78359 -35.93853 -35.36215 -33.38569 -32.25536 -31.66012 -30.73901 -27.95481 -27.09659 -26.37063 -23.92750 -22.48683 -22.21001 -22.07658 -20.76828 -19.82054 -19.02014 -17.67959 -17.07816 -16.48210 -15.94708 -15.75695 -15.39621 -15.06007 -14.75413 -14.55722 -14.45375 -14.08867 -13.91765 -13.79070 -13.25458 -13.21740 -13.06342 -12.74587 -12.58943 -12.32265 -12.08656 -11.91897 -11.81444 -11.77439 -11.68052 -11.28815 -11.11445 -11.00572 -10.95849 -10.90649 -10.77659 -10.59494 -9.94537 -9.91065 -9.73605 -9.41917 -9.13448 -8.87210 -8.82136 -8.39959 -6.04327 -4.07495 2.43884 2.58497 2.78381 3.20559 3.28446 3.36179 3.39571 4.00162 4.05954 4.41912 4.45027 4.50769 4.65995 4.74370 4.83891 5.01252 5.06576 5.14175 5.21375 5.26423 5.31571 5.31670 5.36253 5.45061 5.48520 5.60947 5.67221 5.68564 5.72082 5.74743 5.83148 5.97597 5.99228 6.09521 6.10609 6.34768 6.45361 6.50478 6.54713 6.76799 6.95714 6.98189 7.58396 7.60598 7.72401 7.94205 8.04102 8.25261 8.35476 8.99390 9.56990 11.06968 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.026727 B = 0.002423 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.393018 B =11552.152967 C =11790.067989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.163 3.837 4 C -0.140 4.140 5 C -0.153 4.153 6 N -0.604 5.604 7 C 0.116 3.884 8 C -0.127 4.127 9 H 0.124 0.876 10 C 0.514 3.486 11 O -0.532 6.532 12 N -0.722 5.722 13 C 0.117 3.883 14 C -0.121 4.121 15 C 0.024 3.976 16 C -0.522 4.522 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.149 4.149 25 C 0.520 3.480 26 O -0.528 6.528 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.399 0.601 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.261 0.739 48 H 0.114 0.886 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.692 -17.651 11.884 27.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.180 4.180 3 C 0.061 3.939 4 C -0.178 4.178 5 C -0.210 4.210 6 N -0.338 5.338 7 C -0.007 4.007 8 C -0.149 4.149 9 H 0.142 0.858 10 C 0.298 3.702 11 O -0.409 6.409 12 N -0.372 5.372 13 C -0.006 4.006 14 C -0.159 4.159 15 C -0.014 4.014 16 C -0.560 4.560 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.189 4.189 25 C 0.307 3.693 26 O -0.405 6.405 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.116 0.884 39 H 0.095 0.905 40 H 0.233 0.767 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.070 0.930 48 H 0.132 0.868 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.757 -17.818 12.639 26.935 hybrid contribution 0.004 0.450 -1.374 1.446 sum -15.753 -17.368 11.264 26.013 Atomic orbital electron populations 1.21716 0.95633 1.01492 1.01572 1.21960 0.96245 0.96303 1.03516 1.21063 0.95140 0.92845 0.84872 1.21941 0.94560 0.98437 1.02896 1.21779 1.00558 0.95809 1.02870 1.48236 1.50581 1.28854 1.06122 1.22020 0.94700 0.87228 0.96794 1.22342 0.99893 0.95005 0.97640 0.85831 1.20162 0.83791 0.82022 0.84200 1.90696 1.55809 1.62708 1.31675 1.46176 1.39279 1.42710 1.09080 1.21666 0.88948 0.90067 0.99870 1.21889 1.01326 1.00344 0.92328 1.19032 0.92270 0.92716 0.97383 1.21230 1.19035 1.22509 0.93249 0.92584 1.25037 0.95959 0.96421 0.97097 1.69977 1.22984 1.29274 1.31020 0.86524 0.78059 0.78528 0.84808 1.19750 1.20993 1.20984 1.22400 1.03886 0.94393 0.98252 1.20670 0.79587 0.84785 0.84217 1.90700 1.37921 1.28084 1.83773 0.92852 0.92837 0.92903 0.90236 0.90970 0.89477 0.91305 0.90512 0.93201 0.93130 0.90984 0.88405 0.90463 0.76730 0.91657 0.91766 0.92701 0.92683 0.96296 0.96300 0.92962 0.86818 0.87522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.80 37.16 0.36 -0.67 16 2 C -0.14 -1.21 5.36 -26.73 -0.14 -1.35 16 3 C 0.16 1.51 2.26 -67.93 -0.15 1.35 16 4 C -0.14 -1.51 5.36 -26.74 -0.14 -1.65 16 5 C -0.15 -1.86 9.80 37.15 0.36 -1.49 16 6 N -0.60 -5.89 1.74 -164.84 -0.29 -6.18 16 7 C 0.12 0.92 6.66 -3.12 -0.02 0.89 16 8 C -0.13 -1.00 3.54 -90.14 -0.32 -1.32 16 9 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 10 C 0.51 6.36 7.12 -10.98 -0.08 6.28 16 11 O -0.53 -8.51 13.97 5.56 0.08 -8.43 16 12 N -0.72 -9.09 5.37 -60.29 -0.32 -9.41 16 13 C 0.12 1.94 5.67 -4.04 -0.02 1.91 16 14 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 15 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 16 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 19 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 20 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 24 C -0.15 -1.24 6.40 -26.74 -0.17 -1.41 16 25 C 0.52 6.08 7.37 -10.86 -0.08 6.00 16 26 O -0.53 -8.06 15.02 5.56 0.08 -7.98 16 27 H 0.05 0.39 7.75 -51.93 -0.40 -0.01 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.87 6.62 -51.93 -0.34 0.53 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.69 8.07 -51.93 -0.42 0.27 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.02 6.65 -51.93 -0.35 0.68 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 1.06 6.15 -51.93 -0.32 0.74 16 38 H 0.10 0.91 6.98 -51.93 -0.36 0.55 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.40 3.91 8.47 -40.82 -0.35 3.56 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 48 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.11 0.96 7.76 -51.93 -0.40 0.56 16 LS Contribution 391.02 15.07 5.89 5.89 Total: -1.00 -33.67 391.02 -8.76 -42.43 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -8.82 Total: -0.09 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -1.09 Total: -6.63 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 0.13 Total: -41.52 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: 0.16 Total: -16.41 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.67 -8.76 -42.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170904650.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.590 kcal (2) G-P(sol) polarization free energy of solvation -33.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds