Wall clock time and date at job start Tue Mar 31 2020 11:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46983 * 2 1 4 4 C 1.52997 * 109.47325 * 174.99753 * 3 2 1 5 5 C 1.52995 * 109.47260 * 184.99713 * 4 3 2 6 6 N 1.46497 * 109.47040 * 294.99700 * 3 2 1 7 7 C 1.46770 * 124.34952 * 119.99793 * 6 3 2 8 8 C 1.54480 * 105.47236 * 163.00653 * 7 6 3 9 9 H 1.09002 * 110.96791 * 143.53628 * 8 7 6 10 10 C 1.50705 * 110.96789 * 267.26267 * 8 7 6 11 11 O 1.21280 * 119.99981 * 356.90916 * 10 8 7 12 12 N 1.34779 * 119.99843 * 176.91174 * 10 8 7 13 13 C 1.46502 * 120.00113 * 179.97438 * 12 10 8 14 14 C 1.52996 * 109.47026 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.46859 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.46987 * 179.97438 * 15 14 13 17 17 H 1.07990 * 119.99869 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99769 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99993 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00004 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46777 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47642 * 119.99888 * 20 18 16 23 23 H 1.48506 * 109.47074 * 240.00155 * 20 18 16 24 24 C 1.54628 * 101.76599 * 25.41755 * 8 7 6 25 25 C 1.34424 * 124.35286 * 300.02596 * 6 3 2 26 26 O 1.21280 * 124.93697 * 0.38752 * 25 6 3 27 27 H 1.09003 * 109.47028 * 60.00560 * 1 2 3 28 28 H 1.09000 * 109.46874 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47104 * 300.00210 * 1 2 3 30 30 H 1.08994 * 109.47104 * 239.99790 * 2 1 3 31 31 H 1.09003 * 109.47028 * 119.99440 * 2 1 3 32 32 H 1.09003 * 109.47335 * 54.99545 * 3 2 1 33 33 H 1.09001 * 109.47253 * 305.00100 * 4 3 2 34 34 H 1.09001 * 109.47244 * 64.99505 * 4 3 2 35 35 H 1.08999 * 109.47164 * 60.00289 * 5 4 3 36 36 H 1.09001 * 109.46821 * 179.97438 * 5 4 3 37 37 H 1.08994 * 109.47405 * 299.99993 * 5 4 3 38 38 H 1.09005 * 110.24126 * 44.00714 * 7 6 3 39 39 H 1.08996 * 110.32088 * 282.04737 * 7 6 3 40 40 H 0.96999 * 119.99735 * 359.97438 * 12 10 8 41 41 H 1.08997 * 109.46975 * 300.00636 * 13 12 10 42 42 H 1.09000 * 109.46332 * 60.00179 * 13 12 10 43 43 H 1.08996 * 109.47059 * 299.99867 * 14 13 12 44 44 H 1.09000 * 109.46933 * 60.00252 * 14 13 12 45 45 H 1.09006 * 109.47056 * 300.00405 * 15 14 13 46 46 H 1.08999 * 109.47137 * 59.99740 * 15 14 13 47 47 H 0.97005 * 119.99863 * 179.97438 * 19 18 16 48 48 H 1.08995 * 110.48559 * 93.88283 * 24 8 7 49 49 H 1.08999 * 110.48739 * 216.52271 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4444 0.1258 5 6 4.0644 2.8851 0.2511 6 7 1.6525 2.0974 -1.2518 7 6 0.8075 3.2948 -1.3330 8 6 1.0286 3.8597 -2.7537 9 1 0.1048 4.2751 -3.1564 10 6 2.1278 4.8907 -2.7590 11 8 2.6643 5.2105 -1.7194 12 7 2.5144 5.4575 -3.9191 13 6 3.5825 6.4602 -3.9243 14 6 3.8245 6.9401 -5.3568 15 6 4.9404 7.9868 -5.3623 16 6 5.1792 8.4591 -6.7733 17 1 4.5934 8.0536 -7.5848 18 6 6.1449 9.4096 -7.0280 19 7 6.8573 9.9046 -6.0394 20 14 6.4405 9.9956 -8.7769 21 1 5.5148 9.2893 -9.6985 22 1 6.1984 11.4585 -8.8565 23 1 7.8437 9.7041 -9.1661 24 6 1.4525 2.5938 -3.5339 25 6 2.0246 1.6787 -2.4738 26 8 2.7181 0.7085 -2.6942 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 1.6053 1.9816 0.8418 33 1 3.8570 0.8802 1.0114 34 1 4.0030 0.9836 -0.7595 35 1 3.6263 3.3459 1.1364 36 1 5.1507 2.8863 0.3412 37 1 3.7722 3.4493 -0.6345 38 1 1.1153 4.0250 -0.5845 39 1 -0.2401 3.0291 -1.1915 40 1 2.0855 5.2014 -4.7506 41 1 3.2896 7.3062 -3.3026 42 1 4.4973 6.0185 -3.5293 43 1 4.1172 6.0942 -5.9787 44 1 2.9095 7.3819 -5.7514 45 1 4.6481 8.8328 -4.7400 46 1 5.8552 7.5447 -4.9677 47 1 7.5370 10.5731 -6.2186 48 1 0.5878 2.1319 -4.0103 49 1 2.2121 2.8395 -4.2760 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170904650.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:05 Heat of formation + Delta-G solvation = -124.179881 kcal Electronic energy + Delta-G solvation = -26473.391178 eV Core-core repulsion = 22819.263887 eV Total energy + Delta-G solvation = -3654.127291 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.05803 -40.29583 -37.66724 -37.05717 -36.48051 -35.19541 -33.15733 -33.02794 -31.80189 -28.82253 -28.52445 -27.32152 -25.39180 -23.65060 -22.99240 -22.90258 -22.30374 -20.92746 -19.84731 -18.65720 -18.41881 -17.82846 -16.98244 -16.87268 -16.52996 -16.43955 -16.01361 -15.60009 -15.40708 -15.21339 -14.91239 -14.69453 -14.29172 -14.12011 -13.93294 -13.86997 -13.69602 -13.62074 -13.43356 -13.20437 -12.84370 -12.76607 -12.54853 -12.53294 -12.50009 -12.33596 -12.01550 -11.90504 -11.79814 -11.76478 -11.67050 -11.57153 -11.22264 -10.76080 -10.59328 -10.57074 -10.05600 -9.59573 -8.20505 -6.31890 1.41143 1.41597 1.54627 1.59264 1.63023 2.06278 2.21302 2.42080 3.13480 3.30804 3.36604 3.70629 3.75762 3.93709 4.01477 4.11925 4.18477 4.21666 4.32279 4.40835 4.46237 4.54416 4.55432 4.58880 4.61289 4.72185 4.78708 4.88013 4.90953 4.94595 4.96891 5.00621 5.01699 5.10584 5.16457 5.17003 5.22181 5.35898 5.39533 5.47082 5.54061 5.70111 5.74593 5.83679 6.21435 6.22679 6.60145 6.86253 7.21674 7.28759 7.37973 8.91807 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.026727 B = 0.002423 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.393018 B =11552.152967 C =11790.067989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.136 4.136 3 C 0.159 3.841 4 C -0.136 4.136 5 C -0.147 4.147 6 N -0.602 5.602 7 C 0.113 3.887 8 C -0.111 4.111 9 H 0.172 0.828 10 C 0.507 3.493 11 O -0.572 6.572 12 N -0.714 5.714 13 C 0.133 3.867 14 C -0.102 4.102 15 C 0.023 3.977 16 C -0.539 4.539 17 H 0.067 0.933 18 C -0.005 4.005 19 N -0.936 5.936 20 Si 0.967 3.033 21 H -0.257 1.257 22 H -0.279 1.279 23 H -0.282 1.282 24 C -0.141 4.141 25 C 0.504 3.496 26 O -0.576 6.576 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.061 0.939 36 H 0.041 0.959 37 H 0.045 0.955 38 H 0.084 0.916 39 H 0.118 0.882 40 H 0.416 0.584 41 H 0.052 0.948 42 H 0.040 0.960 43 H 0.064 0.936 44 H 0.072 0.928 45 H -0.007 1.007 46 H -0.012 1.012 47 H 0.263 0.737 48 H 0.151 0.849 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.817 -18.258 11.044 29.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.175 4.175 3 C 0.057 3.943 4 C -0.174 4.174 5 C -0.205 4.205 6 N -0.335 5.335 7 C -0.010 4.010 8 C -0.132 4.132 9 H 0.190 0.810 10 C 0.294 3.706 11 O -0.452 6.452 12 N -0.366 5.366 13 C 0.008 3.992 14 C -0.140 4.140 15 C -0.015 4.015 16 C -0.577 4.577 17 H 0.085 0.915 18 C -0.203 4.203 19 N -0.576 5.576 20 Si 0.792 3.208 21 H -0.181 1.181 22 H -0.205 1.205 23 H -0.208 1.208 24 C -0.181 4.181 25 C 0.292 3.708 26 O -0.457 6.457 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.125 0.875 33 H 0.105 0.895 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.102 0.898 39 H 0.136 0.864 40 H 0.253 0.747 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.011 0.989 46 H 0.006 0.994 47 H 0.072 0.928 48 H 0.169 0.831 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -18.934 -18.430 11.790 28.934 hybrid contribution 1.027 0.644 -1.020 1.584 sum -17.907 -17.786 10.770 27.441 Atomic orbital electron populations 1.21677 0.94024 1.01965 1.02209 1.21887 0.97569 0.95395 1.02601 1.21162 0.93873 0.93766 0.85501 1.21894 0.96013 0.97258 1.02232 1.21707 1.00137 0.96528 1.02080 1.48375 1.50204 1.29056 1.05824 1.22251 0.96317 0.86087 0.96299 1.22401 0.99548 0.93210 0.98022 0.81046 1.21053 0.84211 0.82183 0.83126 1.90692 1.57285 1.64066 1.33112 1.45949 1.38314 1.41878 1.10429 1.21157 0.89466 0.90566 0.97984 1.21588 0.99615 0.98847 0.93906 1.18951 0.93206 0.93439 0.95888 1.21714 1.19033 1.22442 0.94476 0.91460 1.26040 0.95767 0.96706 1.01745 1.70123 1.23804 1.30095 1.33611 0.85364 0.78086 0.78068 0.79315 1.18094 1.20495 1.20762 1.22446 1.04888 0.93719 0.97083 1.21338 0.79151 0.84699 0.85573 1.90674 1.40065 1.30310 1.84602 0.92992 0.92532 0.91351 0.93188 0.89869 0.87477 0.89501 0.93624 0.91954 0.93976 0.93613 0.89816 0.86385 0.74675 0.92956 0.94157 0.91700 0.90940 0.98881 0.99400 0.92845 0.83089 0.88298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.80 71.98 0.71 -0.93 16 2 C -0.14 -2.17 5.36 30.60 0.16 -2.01 16 3 C 0.16 2.77 2.26 44.99 0.10 2.87 16 4 C -0.14 -2.98 5.36 30.59 0.16 -2.81 16 5 C -0.15 -3.69 9.80 71.98 0.71 -2.98 16 6 N -0.60 -10.92 1.74 -794.02 -1.38 -12.30 16 7 C 0.11 1.44 6.66 86.83 0.58 2.02 16 8 C -0.11 -1.37 3.54 -10.48 -0.04 -1.41 16 9 H 0.17 0.60 8.14 -2.39 -0.02 0.58 16 10 C 0.51 11.89 7.12 87.66 0.62 12.51 16 11 O -0.57 -18.42 13.97 -3.03 -0.04 -18.46 16 12 N -0.71 -17.00 5.37 -463.06 -2.49 -19.49 16 13 C 0.13 4.45 5.67 86.38 0.49 4.94 16 14 C -0.10 -3.79 5.27 30.59 0.16 -3.63 16 15 C 0.02 1.18 4.97 29.85 0.15 1.33 16 16 C -0.54 -29.87 9.11 25.60 0.23 -29.64 16 17 H 0.07 3.50 7.74 -2.92 -0.02 3.48 16 18 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 19 N -0.94 -57.25 13.29 21.45 0.28 -56.96 16 20 Si 0.97 43.71 29.54 68.60 2.03 45.74 16 21 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 24 C -0.14 -1.97 6.40 30.59 0.20 -1.77 16 25 C 0.50 11.42 7.37 87.90 0.65 12.07 16 26 O -0.58 -18.16 15.02 -3.03 -0.05 -18.20 16 27 H 0.05 0.62 7.75 -2.39 -0.02 0.60 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.05 1.12 6.62 -2.39 -0.02 1.10 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.11 1.45 8.07 -2.39 -0.02 1.43 16 33 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.04 1.30 6.65 -2.39 -0.02 1.28 16 35 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.04 1.39 6.15 -2.39 -0.01 1.38 16 38 H 0.08 1.39 6.98 -2.38 -0.02 1.38 16 39 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.42 7.01 8.47 -92.71 -0.79 6.23 16 41 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 45 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 46 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 47 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 48 H 0.15 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.10 1.59 7.76 -2.39 -0.02 1.57 16 Total: -1.00 -78.32 391.02 3.83 -74.48 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.13 Total: 14.46 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 5.34 Total: -9.26 kcal Atomic # 7 Polarization: -85.17 SS G_CDS: -3.58 Total: -88.75 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -0.09 Total: -36.67 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -78.32 3.83 -74.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170904650.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.695 kcal (2) G-P(sol) polarization free energy of solvation -78.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds