Wall clock time and date at job start Tue Mar 31 2020 11:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46964 * 2 1 4 4 C 1.52998 * 109.46985 * 119.99583 * 2 1 3 5 5 C 1.52997 * 109.46882 * 177.49024 * 4 2 1 6 6 H 1.08994 * 109.68177 * 60.78734 * 5 4 2 7 7 C 1.53294 * 109.68239 * 300.22749 * 5 4 2 8 8 O 1.42964 * 109.22298 * 187.97614 * 7 5 4 9 9 C 1.42957 * 114.16804 * 62.58274 * 8 7 5 10 10 C 1.53293 * 109.22341 * 297.41863 * 9 8 7 11 11 N 1.47153 * 108.38542 * 52.30083 * 10 9 8 12 12 C 1.34778 * 120.98532 * 129.48352 * 11 10 9 13 13 O 1.21582 * 120.00173 * 175.30152 * 12 11 10 14 14 N 1.34784 * 119.99577 * 355.31056 * 12 11 10 15 15 C 1.46503 * 119.99667 * 184.98144 * 14 12 11 16 16 C 1.52994 * 109.46951 * 185.06638 * 15 14 12 17 17 C 1.50701 * 115.55124 * 304.46243 * 16 15 14 18 18 H 1.08001 * 120.00079 * 145.71932 * 17 16 15 19 19 C 1.37873 * 119.99711 * 325.71363 * 17 16 15 20 20 N 1.31518 * 119.99708 * 166.60545 * 19 17 16 21 21 Si 1.86801 * 120.00527 * 346.60619 * 19 17 16 22 22 H 1.48499 * 109.47026 * 95.62428 * 21 19 17 23 23 H 1.48492 * 109.47642 * 215.62927 * 21 19 17 24 24 H 1.48502 * 109.46893 * 335.62730 * 21 19 17 25 25 C 1.52996 * 117.49819 * 158.79079 * 16 15 14 26 26 C 1.53004 * 117.49828 * 90.13159 * 16 15 14 27 27 H 1.08998 * 109.47508 * 300.00180 * 1 2 3 28 28 H 1.09004 * 109.47250 * 60.00319 * 1 2 3 29 29 H 1.08995 * 109.47380 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47028 * 239.99953 * 2 1 3 31 31 H 1.09001 * 109.47101 * 65.55983 * 3 2 1 32 32 H 1.08998 * 109.46685 * 185.56229 * 3 2 1 33 33 H 1.09000 * 109.47140 * 305.55865 * 3 2 1 34 34 H 1.08995 * 109.47646 * 297.49079 * 4 2 1 35 35 H 1.09000 * 109.47059 * 57.49350 * 4 2 1 36 36 H 1.08995 * 109.51368 * 307.89830 * 7 5 4 37 37 H 1.09000 * 109.51566 * 68.05506 * 7 5 4 38 38 H 1.09001 * 109.51740 * 177.49760 * 9 8 7 39 39 H 1.09007 * 109.55558 * 57.36987 * 9 8 7 40 40 H 1.08999 * 109.68353 * 292.57784 * 10 9 8 41 41 H 1.09005 * 109.71542 * 172.03769 * 10 9 8 42 42 H 0.96997 * 119.99879 * 4.98308 * 14 12 11 43 43 H 1.09005 * 109.46869 * 305.06647 * 15 14 12 44 44 H 1.09005 * 109.46861 * 65.06722 * 15 14 12 45 45 H 0.97003 * 119.99928 * 180.02562 * 20 19 17 46 46 H 1.09003 * 117.49918 * 0.02562 * 25 16 15 47 47 H 1.09008 * 117.50320 * 145.01931 * 25 16 15 48 48 H 1.08997 * 117.49804 * 214.97872 * 26 16 15 49 49 H 1.09001 * 117.50082 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5686 -0.7761 1.2181 6 1 3.9722 0.2363 1.2093 7 6 4.0327 -1.5287 -0.0341 8 8 5.4452 -1.7371 0.0385 9 6 5.8612 -2.5491 1.1390 10 6 5.4908 -1.8488 2.4514 11 7 4.0629 -1.4963 2.4023 12 6 3.2325 -1.8231 3.4123 13 8 2.0757 -1.4492 3.3934 14 7 3.6845 -2.5642 4.4434 15 6 2.7573 -3.0115 5.4858 16 6 3.5390 -3.7198 6.5938 17 6 4.3978 -4.8748 6.1471 18 1 5.3370 -5.0727 6.6423 19 6 3.9845 -5.6789 5.1062 20 7 4.8318 -6.5118 4.5422 21 14 2.2211 -5.5856 4.4970 22 1 2.1479 -4.6679 3.3318 23 1 1.7655 -6.9391 4.0904 24 1 1.3480 -5.0754 5.5845 25 6 2.8786 -3.8215 7.9701 26 6 4.0532 -2.8643 7.7534 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.7602 1.9269 0.9356 32 1 3.1254 1.4441 -0.0996 33 1 1.5976 1.9843 -0.8360 34 1 1.7139 -0.1820 2.1387 35 1 1.6404 -1.7350 1.2721 36 1 3.5251 -2.4916 -0.0892 37 1 3.7967 -0.9405 -0.9209 38 1 6.9406 -2.6951 1.0964 39 1 5.3609 -3.5163 1.0886 40 1 6.0884 -0.9446 2.5664 41 1 5.6746 -2.5196 3.2907 42 1 4.6236 -2.8013 4.4952 43 1 2.2361 -2.1496 5.9027 44 1 2.0317 -3.7015 5.0549 45 1 4.5412 -7.0773 3.8096 46 1 1.8869 -3.3842 8.0861 47 1 3.0654 -4.7237 8.5528 48 1 5.0124 -3.1371 8.1934 49 1 3.8349 -1.7967 7.7267 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332227395.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:22 Heat of formation + Delta-G solvation = -25.993398 kcal Electronic energy + Delta-G solvation = -28188.359458 eV Core-core repulsion = 24538.489852 eV Total energy + Delta-G solvation = -3649.869606 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.57836 -38.43243 -37.16528 -36.51043 -34.42953 -33.46661 -32.33458 -31.35623 -28.38565 -27.19324 -26.65357 -26.07155 -25.08946 -23.07831 -22.06088 -21.45299 -19.94889 -19.50056 -19.10680 -17.66770 -16.65840 -16.30415 -16.10995 -15.84973 -15.23680 -15.09184 -14.93250 -14.53263 -14.35034 -13.99553 -13.61499 -13.55275 -13.18691 -13.05193 -12.89354 -12.43290 -12.33292 -12.19929 -12.08445 -11.81974 -11.56441 -11.33864 -11.12679 -10.98709 -10.78092 -10.68069 -10.54035 -10.49959 -10.44871 -10.10118 -9.97095 -9.61155 -9.40756 -9.01131 -8.82335 -8.47404 -8.39910 -7.97380 -6.31891 -4.25788 2.88504 3.24978 3.33996 3.36249 3.64817 3.81175 4.27342 4.27869 4.72352 4.75616 4.88653 4.96781 4.97135 5.07495 5.11089 5.24662 5.27797 5.28995 5.43959 5.52912 5.63146 5.64025 5.68266 5.74212 5.80386 5.84326 5.86877 5.87955 5.94925 6.06965 6.11680 6.12972 6.22375 6.24267 6.41934 6.46787 6.48792 6.55514 6.62206 6.80138 6.89780 7.06685 7.10034 7.24431 7.32225 7.58449 8.32892 8.49062 8.74465 9.09355 9.33697 10.78685 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014834 B = 0.005046 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.110255 B = 5547.454028 C = 6063.333495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.107 4.107 3 C -0.148 4.148 4 C -0.108 4.108 5 C 0.134 3.866 6 H 0.076 0.924 7 C 0.048 3.952 8 O -0.382 6.382 9 C 0.047 3.953 10 C 0.076 3.924 11 N -0.635 5.635 12 C 0.706 3.294 13 O -0.595 6.595 14 N -0.719 5.719 15 C 0.159 3.841 16 C -0.007 4.007 17 C -0.490 4.490 18 H 0.080 0.920 19 C 0.086 3.914 20 N -0.883 5.883 21 Si 0.887 3.113 22 H -0.278 1.278 23 H -0.301 1.301 24 H -0.263 1.263 25 C -0.200 4.200 26 C -0.187 4.187 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.107 0.893 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.405 0.595 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.266 0.734 46 H 0.070 0.930 47 H 0.088 0.912 48 H 0.083 0.917 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.234 11.758 -8.615 14.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.126 4.126 3 C -0.205 4.205 4 C -0.146 4.146 5 C 0.030 3.970 6 H 0.094 0.906 7 C -0.029 4.029 8 O -0.301 6.301 9 C -0.030 4.030 10 C -0.048 4.048 11 N -0.374 5.374 12 C 0.408 3.592 13 O -0.475 6.475 14 N -0.376 5.376 15 C 0.036 3.964 16 C -0.009 4.009 17 C -0.527 4.527 18 H 0.098 0.902 19 C -0.118 4.118 20 N -0.518 5.518 21 Si 0.718 3.282 22 H -0.204 1.204 23 H -0.229 1.229 24 H -0.189 1.189 25 C -0.238 4.238 26 C -0.224 4.224 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.125 0.875 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.116 0.884 42 H 0.244 0.756 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.088 0.912 47 H 0.106 0.894 48 H 0.102 0.898 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.899 11.915 -8.878 14.980 hybrid contribution -0.602 -0.430 -0.051 0.742 sum -2.501 11.486 -8.929 14.762 Atomic orbital electron populations 1.21758 0.95174 1.01675 1.01314 1.21344 0.96107 0.96349 0.98775 1.21891 1.00819 0.96173 1.01616 1.22231 0.91678 1.02455 0.98202 1.21781 0.96314 0.94969 0.83939 0.90586 1.23163 0.81823 1.00023 0.97918 1.87916 1.22490 1.71480 1.48169 1.22980 1.01077 0.93564 0.85406 1.22339 0.81897 1.00804 0.99715 1.47301 1.08470 1.62046 1.19572 1.15927 0.84333 0.79053 0.79852 1.90827 1.17108 1.59986 1.79575 1.45350 1.13535 1.54830 1.23860 1.21129 0.90873 0.96920 0.87514 1.19542 0.98256 0.97256 0.85826 1.20311 1.05645 1.09942 1.16808 0.90213 1.24922 0.96847 0.94783 0.95294 1.69929 1.34234 1.24563 1.23087 0.86972 0.86068 0.75530 0.79584 1.20427 1.22935 1.18942 1.23102 0.95203 1.01116 1.04408 1.22825 0.98062 0.95175 1.06336 0.92591 0.93164 0.92843 0.91771 0.92590 0.92699 0.93087 0.87472 0.91437 0.92731 0.87912 0.87540 0.92210 0.90779 0.88442 0.75610 0.92639 0.92737 0.92371 0.91180 0.89360 0.89823 0.90890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.19 37.16 0.34 -1.23 16 2 C -0.11 -1.21 2.67 -90.62 -0.24 -1.46 16 3 C -0.15 -1.48 8.75 37.16 0.33 -1.15 16 4 C -0.11 -1.60 2.70 -26.73 -0.07 -1.68 16 5 C 0.13 1.91 2.89 -67.42 -0.19 1.72 16 6 H 0.08 1.01 6.67 -51.93 -0.35 0.67 16 7 C 0.05 0.63 5.67 37.31 0.21 0.84 16 8 O -0.38 -5.33 10.74 -35.23 -0.38 -5.70 16 9 C 0.05 0.63 6.98 37.31 0.26 0.90 16 10 C 0.08 1.08 6.63 -3.53 -0.02 1.06 16 11 N -0.63 -10.50 3.02 -170.43 -0.51 -11.02 16 12 C 0.71 14.07 8.15 -86.91 -0.71 13.37 16 13 O -0.59 -12.96 12.05 5.29 0.06 -12.89 16 14 N -0.72 -14.74 4.88 -65.22 -0.32 -15.06 16 15 C 0.16 3.49 4.37 -4.04 -0.02 3.47 16 16 C -0.01 -0.17 1.47 -155.66 -0.23 -0.40 16 17 C -0.49 -12.57 8.87 -34.44 -0.31 -12.88 16 18 H 0.08 2.22 8.06 -52.49 -0.42 1.79 16 19 C 0.09 2.29 5.34 -17.82 -0.10 2.19 16 20 N -0.88 -24.68 13.96 55.43 0.77 -23.91 16 21 Si 0.89 21.93 23.88 -169.99 -4.06 17.87 16 22 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.30 -7.56 7.11 56.52 0.40 -7.15 16 24 H -0.26 -6.38 6.43 56.52 0.36 -6.02 16 25 C -0.20 -4.04 9.96 -26.70 -0.27 -4.30 16 26 C -0.19 -3.61 9.93 -26.69 -0.27 -3.87 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.67 6.50 -51.93 -0.34 0.33 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.53 6.81 -51.93 -0.35 0.17 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.11 1.85 6.05 -51.93 -0.31 1.54 16 35 H 0.07 1.18 7.48 -51.93 -0.39 0.80 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.10 1.10 6.85 -51.93 -0.36 0.75 16 38 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.10 1.46 5.66 -51.93 -0.29 1.16 16 42 H 0.41 8.06 5.49 -40.82 -0.22 7.83 16 43 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 44 H 0.06 1.32 2.55 -51.93 -0.13 1.18 16 45 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 46 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 47 H 0.09 1.79 8.14 -51.92 -0.42 1.36 16 48 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 49 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 367.08 15.07 5.53 5.53 Total: -1.00 -29.20 367.08 -8.44 -37.64 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -8.26 Total: 10.96 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -1.28 Total: -3.42 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -0.06 Total: -49.98 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.31 Total: -18.60 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.06 Total: 17.87 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.20 -8.44 -37.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332227395.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.645 kcal (2) G-P(sol) polarization free energy of solvation -29.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds