Wall clock time and date at job start Tue Mar 31 2020 11:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46964 * 2 1 4 4 C 1.52998 * 109.46985 * 119.99583 * 2 1 3 5 5 C 1.52997 * 109.46882 * 177.49024 * 4 2 1 6 6 H 1.08994 * 109.68177 * 60.78734 * 5 4 2 7 7 C 1.53294 * 109.68239 * 300.22749 * 5 4 2 8 8 O 1.42964 * 109.22298 * 187.97614 * 7 5 4 9 9 C 1.42957 * 114.16804 * 62.58274 * 8 7 5 10 10 C 1.53293 * 109.22341 * 297.41863 * 9 8 7 11 11 N 1.47153 * 108.38542 * 52.30083 * 10 9 8 12 12 C 1.34778 * 120.98532 * 129.48352 * 11 10 9 13 13 O 1.21582 * 120.00173 * 175.30152 * 12 11 10 14 14 N 1.34784 * 119.99577 * 355.31056 * 12 11 10 15 15 C 1.46503 * 119.99667 * 184.98144 * 14 12 11 16 16 C 1.52994 * 109.46951 * 185.06638 * 15 14 12 17 17 C 1.50701 * 115.55124 * 304.46243 * 16 15 14 18 18 H 1.08001 * 120.00079 * 145.71932 * 17 16 15 19 19 C 1.37873 * 119.99711 * 325.71363 * 17 16 15 20 20 N 1.31518 * 119.99708 * 166.60545 * 19 17 16 21 21 Si 1.86801 * 120.00527 * 346.60619 * 19 17 16 22 22 H 1.48499 * 109.47026 * 95.62428 * 21 19 17 23 23 H 1.48492 * 109.47642 * 215.62927 * 21 19 17 24 24 H 1.48502 * 109.46893 * 335.62730 * 21 19 17 25 25 C 1.52996 * 117.49819 * 158.79079 * 16 15 14 26 26 C 1.53004 * 117.49828 * 90.13159 * 16 15 14 27 27 H 1.08998 * 109.47508 * 300.00180 * 1 2 3 28 28 H 1.09004 * 109.47250 * 60.00319 * 1 2 3 29 29 H 1.08995 * 109.47380 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47028 * 239.99953 * 2 1 3 31 31 H 1.09001 * 109.47101 * 65.55983 * 3 2 1 32 32 H 1.08998 * 109.46685 * 185.56229 * 3 2 1 33 33 H 1.09000 * 109.47140 * 305.55865 * 3 2 1 34 34 H 1.08995 * 109.47646 * 297.49079 * 4 2 1 35 35 H 1.09000 * 109.47059 * 57.49350 * 4 2 1 36 36 H 1.08995 * 109.51368 * 307.89830 * 7 5 4 37 37 H 1.09000 * 109.51566 * 68.05506 * 7 5 4 38 38 H 1.09001 * 109.51740 * 177.49760 * 9 8 7 39 39 H 1.09007 * 109.55558 * 57.36987 * 9 8 7 40 40 H 1.08999 * 109.68353 * 292.57784 * 10 9 8 41 41 H 1.09005 * 109.71542 * 172.03769 * 10 9 8 42 42 H 0.96997 * 119.99879 * 4.98308 * 14 12 11 43 43 H 1.09005 * 109.46869 * 305.06647 * 15 14 12 44 44 H 1.09005 * 109.46861 * 65.06722 * 15 14 12 45 45 H 0.97003 * 119.99928 * 180.02562 * 20 19 17 46 46 H 1.09003 * 117.49918 * 0.02562 * 25 16 15 47 47 H 1.09008 * 117.50320 * 145.01931 * 25 16 15 48 48 H 1.08997 * 117.49804 * 214.97872 * 26 16 15 49 49 H 1.09001 * 117.50082 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5686 -0.7761 1.2181 6 1 3.9722 0.2363 1.2093 7 6 4.0327 -1.5287 -0.0341 8 8 5.4452 -1.7371 0.0385 9 6 5.8612 -2.5491 1.1390 10 6 5.4908 -1.8488 2.4514 11 7 4.0629 -1.4963 2.4023 12 6 3.2325 -1.8231 3.4123 13 8 2.0757 -1.4492 3.3934 14 7 3.6845 -2.5642 4.4434 15 6 2.7573 -3.0115 5.4858 16 6 3.5390 -3.7198 6.5938 17 6 4.3978 -4.8748 6.1471 18 1 5.3370 -5.0727 6.6423 19 6 3.9845 -5.6789 5.1062 20 7 4.8318 -6.5118 4.5422 21 14 2.2211 -5.5856 4.4970 22 1 2.1479 -4.6679 3.3318 23 1 1.7655 -6.9391 4.0904 24 1 1.3480 -5.0754 5.5845 25 6 2.8786 -3.8215 7.9701 26 6 4.0532 -2.8643 7.7534 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.7602 1.9269 0.9356 32 1 3.1254 1.4441 -0.0996 33 1 1.5976 1.9843 -0.8360 34 1 1.7139 -0.1820 2.1387 35 1 1.6404 -1.7350 1.2721 36 1 3.5251 -2.4916 -0.0892 37 1 3.7967 -0.9405 -0.9209 38 1 6.9406 -2.6951 1.0964 39 1 5.3609 -3.5163 1.0886 40 1 6.0884 -0.9446 2.5664 41 1 5.6746 -2.5196 3.2907 42 1 4.6236 -2.8013 4.4952 43 1 2.2361 -2.1496 5.9027 44 1 2.0317 -3.7015 5.0549 45 1 4.5412 -7.0773 3.8096 46 1 1.8869 -3.3842 8.0861 47 1 3.0654 -4.7237 8.5528 48 1 5.0124 -3.1371 8.1934 49 1 3.8349 -1.7967 7.7267 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332227395.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:21 Heat of formation + Delta-G solvation = -44.164511 kcal Electronic energy + Delta-G solvation = -28189.147417 eV Core-core repulsion = 24538.489852 eV Total energy + Delta-G solvation = -3650.657565 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.92952 -39.82298 -38.72161 -37.61548 -35.79270 -34.94453 -34.37613 -32.48676 -29.70992 -28.37303 -27.99871 -27.21601 -26.89644 -24.21337 -23.40049 -22.98571 -21.33108 -20.86048 -20.65740 -19.14484 -18.29572 -17.68049 -17.57800 -17.34839 -16.71532 -16.31627 -16.05425 -15.87134 -15.57720 -15.48674 -15.09638 -14.99709 -14.75810 -14.38179 -14.16149 -13.95232 -13.90513 -13.45033 -13.10651 -13.06337 -12.87013 -12.59100 -12.57194 -12.38341 -12.22115 -12.16110 -11.85074 -11.76499 -11.57067 -11.46707 -11.44594 -11.31429 -11.25889 -10.75919 -10.46846 -10.20603 -9.93602 -9.40189 -8.41069 -6.33267 1.23739 1.31866 1.34005 1.52536 2.10563 2.22990 2.72881 2.75091 2.96407 3.46684 3.63046 3.77593 3.88552 3.94986 3.97956 4.03027 4.10303 4.14845 4.19396 4.21978 4.40091 4.43730 4.47479 4.50156 4.61938 4.71061 4.77289 4.78461 4.80112 4.83183 4.91340 4.93723 4.97236 5.02616 5.12748 5.14226 5.20046 5.25752 5.44011 5.48706 5.49452 5.57372 5.64289 5.71551 5.87450 6.00644 6.27669 6.65348 6.97049 7.26743 7.55088 8.73101 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014834 B = 0.005046 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.110255 B = 5547.454028 C = 6063.333495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 C -0.143 4.143 4 C -0.097 4.097 5 C 0.130 3.870 6 H 0.095 0.905 7 C 0.052 3.948 8 O -0.382 6.382 9 C 0.050 3.950 10 C 0.074 3.926 11 N -0.635 5.635 12 C 0.699 3.301 13 O -0.619 6.619 14 N -0.722 5.722 15 C 0.166 3.834 16 C -0.037 4.037 17 C -0.478 4.478 18 H 0.053 0.947 19 C 0.055 3.945 20 N -0.919 5.919 21 Si 0.932 3.068 22 H -0.294 1.294 23 H -0.309 1.309 24 H -0.255 1.255 25 C -0.192 4.192 26 C -0.161 4.161 27 H 0.045 0.955 28 H 0.072 0.928 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.030 0.970 36 H 0.038 0.962 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.037 0.963 40 H 0.101 0.899 41 H 0.086 0.914 42 H 0.406 0.594 43 H 0.065 0.935 44 H 0.032 0.968 45 H 0.266 0.734 46 H 0.090 0.910 47 H 0.086 0.914 48 H 0.086 0.914 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.997 13.944 -9.223 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 C -0.201 4.201 4 C -0.134 4.134 5 C 0.027 3.973 6 H 0.113 0.887 7 C -0.025 4.025 8 O -0.300 6.300 9 C -0.028 4.028 10 C -0.049 4.049 11 N -0.373 5.373 12 C 0.401 3.599 13 O -0.501 6.501 14 N -0.379 5.379 15 C 0.042 3.958 16 C -0.038 4.038 17 C -0.515 4.515 18 H 0.071 0.929 19 C -0.146 4.146 20 N -0.557 5.557 21 Si 0.765 3.235 22 H -0.222 1.222 23 H -0.238 1.238 24 H -0.180 1.180 25 C -0.230 4.230 26 C -0.198 4.198 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.055 0.945 40 H 0.119 0.881 41 H 0.104 0.896 42 H 0.245 0.755 43 H 0.083 0.917 44 H 0.049 0.951 45 H 0.075 0.925 46 H 0.108 0.892 47 H 0.104 0.896 48 H 0.105 0.895 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.649 14.117 -9.486 17.088 hybrid contribution -0.648 -1.068 0.177 1.262 sum -2.298 13.048 -9.309 16.193 Atomic orbital electron populations 1.21767 0.95084 1.01122 1.01964 1.21315 0.96220 0.97201 0.97313 1.21855 1.01394 0.94840 1.01967 1.21977 0.92143 1.00274 0.99042 1.22011 0.95927 0.95792 0.83536 0.88738 1.23224 0.81396 0.99546 0.98365 1.87922 1.22688 1.71291 1.48129 1.23030 1.02504 0.92309 0.84950 1.22514 0.80760 1.01851 0.99770 1.47452 1.09185 1.61484 1.19228 1.16138 0.84454 0.78999 0.80334 1.90830 1.18242 1.60845 1.80187 1.45314 1.13374 1.55130 1.24100 1.20961 0.90699 0.96610 0.87568 1.19462 0.99797 0.97529 0.87040 1.20388 1.04839 1.10466 1.15835 0.92930 1.25274 0.98451 0.94944 0.95884 1.69999 1.35357 1.26119 1.24251 0.86266 0.84145 0.74342 0.78792 1.22196 1.23760 1.18007 1.23141 0.96652 1.01536 1.01668 1.22856 0.97920 0.96103 1.02912 0.93563 0.90856 0.94049 0.90253 0.93520 0.91882 0.91179 0.90159 0.95065 0.94397 0.84809 0.84715 0.94476 0.88126 0.89602 0.75474 0.91688 0.95084 0.92490 0.89180 0.89589 0.89528 0.88593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.19 71.98 0.66 -2.34 16 2 C -0.10 -2.15 2.67 -10.79 -0.03 -2.18 16 3 C -0.14 -2.49 8.75 71.98 0.63 -1.86 16 4 C -0.10 -2.87 2.70 30.59 0.08 -2.78 16 5 C 0.13 3.57 2.89 44.96 0.13 3.70 16 6 H 0.09 2.28 6.67 -2.39 -0.02 2.27 16 7 C 0.05 1.28 5.67 72.08 0.41 1.68 16 8 O -0.38 -9.81 10.74 -148.98 -1.60 -11.41 16 9 C 0.05 1.27 6.98 72.08 0.50 1.77 16 10 C 0.07 2.01 6.63 86.35 0.57 2.58 16 11 N -0.64 -20.74 3.02 -811.38 -2.45 -23.19 16 12 C 0.70 28.07 8.15 179.05 1.46 29.53 16 13 O -0.62 -27.52 12.05 -3.97 -0.05 -27.57 16 14 N -0.72 -29.66 4.88 -478.52 -2.34 -32.00 16 15 C 0.17 7.18 4.37 86.38 0.38 7.56 16 16 C -0.04 -1.60 1.47 -52.93 -0.08 -1.68 16 17 C -0.48 -24.64 8.87 25.60 0.23 -24.41 16 18 H 0.05 2.97 8.06 -2.91 -0.02 2.94 16 19 C 0.06 2.98 5.34 84.65 0.45 3.44 16 20 N -0.92 -52.61 13.96 21.45 0.30 -52.31 16 21 Si 0.93 46.41 23.88 68.60 1.64 48.05 16 22 H -0.29 -15.30 7.11 99.48 0.71 -14.60 16 23 H -0.31 -15.54 7.11 99.48 0.71 -14.84 16 24 H -0.25 -12.15 6.43 99.48 0.64 -11.51 16 25 C -0.19 -7.30 9.96 30.62 0.30 -7.00 16 26 C -0.16 -5.81 9.93 30.62 0.30 -5.50 16 27 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.08 1.46 6.50 -2.39 -0.02 1.45 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 1.00 6.81 -2.39 -0.02 0.98 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 2.83 6.05 -2.40 -0.01 2.82 16 35 H 0.03 1.13 7.48 -2.39 -0.02 1.11 16 36 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.13 2.43 6.85 -2.39 -0.02 2.42 16 38 H 0.14 2.67 8.14 -2.39 -0.02 2.65 16 39 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.09 2.55 5.66 -2.38 -0.01 2.54 16 42 H 0.41 16.26 5.49 -92.71 -0.51 15.75 16 43 H 0.06 2.67 8.05 -2.38 -0.02 2.65 16 44 H 0.03 1.51 2.55 -2.38 -0.01 1.50 16 45 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 46 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 47 H 0.09 3.31 8.14 -2.38 -0.02 3.30 16 48 H 0.09 3.09 8.14 -2.39 -0.02 3.08 16 49 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -64.01 367.08 1.87 -62.14 By element: Atomic # 1 Polarization: 33.44 SS G_CDS: 0.36 Total: 33.80 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 6.01 Total: 2.49 kcal Atomic # 7 Polarization: -103.01 SS G_CDS: -4.49 Total: -107.50 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: -1.65 Total: -38.98 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.64 Total: 48.05 kcal Total: -64.01 1.87 -62.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332227395.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.972 kcal (2) G-P(sol) polarization free energy of solvation -64.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds