Wall clock time and date at job start Tue Mar 31 2020 09:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 C 1.53006 * 109.46623 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46626 * 179.97438 * 4 3 2 6 6 C 1.52993 * 109.47522 * 295.00072 * 5 4 3 7 7 C 1.53002 * 109.47372 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47328 * 59.99669 * 7 6 5 9 9 C 1.50703 * 109.46679 * 60.00330 * 8 7 6 10 10 O 1.21279 * 119.99961 * 239.99918 * 9 8 7 11 11 N 1.34771 * 120.00122 * 60.00202 * 9 8 7 12 12 C 1.46503 * 120.00242 * 180.02562 * 11 9 8 13 13 C 1.50699 * 109.47150 * 179.97438 * 12 11 9 14 14 O 1.21287 * 120.00407 * 0.02562 * 13 12 11 15 15 N 1.34783 * 119.99552 * 179.97438 * 13 12 11 16 16 C 1.37095 * 119.99960 * 179.97438 * 15 13 12 17 17 H 1.08011 * 119.99611 * 0.02562 * 16 15 13 18 18 C 1.38947 * 120.00388 * 180.02562 * 16 15 13 19 19 N 1.31411 * 119.99717 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00147 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47355 * 89.99863 * 20 18 16 22 22 H 1.48499 * 109.47033 * 210.00051 * 20 18 16 23 23 H 1.48504 * 109.47224 * 329.99809 * 20 18 16 24 24 C 1.52998 * 109.47109 * 300.00806 * 8 7 6 25 25 C 1.52993 * 109.47626 * 59.99289 * 24 8 7 26 26 H 1.09001 * 109.47377 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46866 * 300.00212 * 1 2 3 28 28 H 1.08996 * 109.47261 * 59.99820 * 1 2 3 29 29 H 1.09000 * 109.46866 * 239.99788 * 2 1 3 30 30 H 1.09001 * 109.46611 * 119.99905 * 2 1 3 31 31 H 1.09000 * 109.47486 * 60.00167 * 3 2 1 32 32 H 1.09001 * 109.47362 * 299.99445 * 3 2 1 33 33 H 1.08993 * 109.46955 * 300.00075 * 4 3 2 34 34 H 1.09000 * 109.47050 * 59.99904 * 4 3 2 35 35 H 1.09002 * 109.47016 * 55.00506 * 5 4 3 36 36 H 1.09002 * 109.47330 * 300.00242 * 6 5 4 37 37 H 1.09000 * 109.47130 * 60.00256 * 6 5 4 38 38 H 1.09002 * 109.46816 * 300.00220 * 7 6 5 39 39 H 1.09000 * 109.47511 * 180.02562 * 7 6 5 40 40 H 1.08998 * 109.46865 * 180.02562 * 8 7 6 41 41 H 0.97000 * 120.00373 * 359.97438 * 11 9 8 42 42 H 1.09000 * 109.46911 * 299.99968 * 12 11 9 43 43 H 1.09001 * 109.46933 * 59.99680 * 12 11 9 44 44 H 0.97001 * 120.00214 * 0.02562 * 15 13 12 45 45 H 0.97004 * 120.00013 * 179.97438 * 19 18 16 46 46 H 1.09007 * 109.46726 * 299.99156 * 24 8 7 47 47 H 1.09000 * 109.46821 * 180.02562 * 24 8 7 48 48 H 1.09000 * 109.47453 * 179.97438 * 25 24 8 49 49 H 1.09007 * 109.47176 * 60.00143 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8849 0.0000 6 6 3.6759 3.5682 -1.3078 7 6 4.1864 5.0105 -1.3087 8 6 5.7113 5.0119 -1.1826 9 6 6.3121 4.2657 -2.3458 10 8 6.9963 3.2840 -2.1483 11 7 6.0892 4.6893 -3.6057 12 6 6.6729 3.9635 -4.7366 13 6 6.2743 4.6363 -6.0248 14 8 5.5723 5.6251 -6.0007 15 7 6.6990 4.1399 -7.2037 16 6 6.3360 4.7516 -8.3757 17 1 5.7101 5.6316 -8.3543 18 6 6.7733 4.2395 -9.5912 19 7 7.5352 3.1691 -9.6172 20 14 6.2793 5.0735 -11.1880 21 1 7.2890 6.1034 -11.5416 22 1 6.2038 4.0615 -12.2722 23 1 4.9523 5.7185 -11.0197 24 6 6.1154 4.3285 0.1253 25 6 5.6049 2.8863 0.1261 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 3.9330 0.9287 0.8908 34 1 3.9338 0.9284 -0.8891 35 1 3.6451 3.4244 0.8414 36 1 4.1108 3.0287 -2.1492 37 1 2.5896 3.5669 -1.3978 38 1 3.7518 5.5503 -0.4673 39 1 3.8981 5.4975 -2.2403 40 1 6.0748 6.0395 -1.1827 41 1 5.5418 5.4742 -3.7638 42 1 7.7592 3.9640 -4.6469 43 1 6.3087 2.9361 -4.7359 44 1 7.2607 3.3493 -7.2230 45 1 7.8401 2.8114 -10.4657 46 1 5.6808 4.8684 0.9667 47 1 7.2017 4.3300 0.2153 48 1 5.8932 2.3993 1.0577 49 1 6.0395 2.3465 -0.7153 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344120565.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:34:25 Heat of formation + Delta-G solvation = -125.098489 kcal Electronic energy + Delta-G solvation = -26132.732009 eV Core-core repulsion = 22478.564884 eV Total energy + Delta-G solvation = -3654.167125 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.48556 -38.51015 -37.61528 -35.53881 -34.47676 -33.71827 -32.46291 -31.38661 -30.72820 -28.74864 -27.46403 -24.84688 -24.07297 -22.82215 -22.06539 -20.99098 -20.31886 -19.70366 -19.16342 -18.05732 -16.71839 -16.13270 -15.72246 -15.49089 -15.35624 -14.90983 -14.52996 -14.30770 -14.24491 -14.10906 -13.89887 -13.62940 -13.32664 -13.15334 -12.86325 -12.47788 -12.23052 -12.18778 -12.02869 -11.93389 -11.78588 -11.63930 -11.33083 -11.24402 -11.14007 -11.12744 -10.93128 -10.68808 -10.54908 -10.46722 -10.32398 -10.03346 -9.91528 -9.64472 -9.33776 -8.71794 -8.63676 -8.10965 -6.52323 -3.94360 2.88729 3.11015 3.21157 3.25898 3.44218 3.73554 4.10824 4.48164 4.57485 4.67929 4.76958 4.82029 4.88403 4.93724 4.96905 5.16153 5.18880 5.24229 5.29658 5.33696 5.40994 5.50187 5.53330 5.58520 5.62811 5.66544 5.75282 5.81127 5.85287 5.87127 5.93431 5.96737 5.97741 6.01683 6.07147 6.11987 6.14962 6.19101 6.23464 6.31957 6.35539 6.57377 6.80209 7.45104 7.86427 7.91448 8.43880 8.52667 9.03801 9.38594 9.86492 10.64611 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014407 B = 0.002758 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.002316 B =10151.050333 C =11277.323224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.115 4.115 5 C -0.084 4.084 6 C -0.118 4.118 7 C -0.111 4.111 8 C -0.108 4.108 9 C 0.518 3.482 10 O -0.545 6.545 11 N -0.708 5.708 12 C 0.109 3.891 13 C 0.428 3.572 14 O -0.597 6.597 15 N -0.550 5.550 16 C -0.305 4.305 17 H 0.105 0.895 18 C 0.025 3.975 19 N -0.895 5.895 20 Si 0.933 3.067 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.269 1.269 24 C -0.094 4.094 25 C -0.128 4.128 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.410 0.590 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.396 0.604 45 H 0.274 0.726 46 H 0.063 0.937 47 H 0.066 0.934 48 H 0.054 0.946 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.762 -2.294 20.026 21.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.152 4.152 5 C -0.103 4.103 6 C -0.156 4.156 7 C -0.149 4.149 8 C -0.129 4.129 9 C 0.304 3.696 10 O -0.424 6.424 11 N -0.362 5.362 12 C -0.019 4.019 13 C 0.214 3.786 14 O -0.484 6.484 15 N -0.184 5.184 16 C -0.434 4.434 17 H 0.123 0.877 18 C -0.177 4.177 19 N -0.535 5.535 20 Si 0.759 3.241 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.193 1.193 24 C -0.132 4.132 25 C -0.166 4.166 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.112 0.888 41 H 0.248 0.752 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.229 0.771 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.085 0.915 48 H 0.073 0.927 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.651 -2.450 19.965 21.521 hybrid contribution -0.047 0.259 -1.047 1.080 sum -7.699 -2.191 18.918 20.541 Atomic orbital electron populations 1.21781 0.96103 1.01415 1.01730 1.21548 0.95664 0.97255 1.01913 1.21677 0.95715 0.96457 1.01996 1.21633 0.95026 0.96577 1.02002 1.21163 0.96061 0.95538 0.97513 1.21668 1.00677 0.95232 0.98013 1.21545 0.92916 0.97749 1.02709 1.21351 0.96963 1.00406 0.94178 1.20520 0.80418 0.84808 0.83820 1.90600 1.39707 1.26996 1.85092 1.45770 1.53040 1.32470 1.04876 1.20930 0.99089 0.96204 0.85681 1.19769 0.86357 0.87568 0.84920 1.90491 1.42739 1.28475 1.86710 1.41806 1.44686 1.27369 1.04575 1.19726 1.29947 1.11388 0.82366 0.87697 1.25325 0.96354 0.96221 0.99832 1.69616 1.34251 1.21717 1.27932 0.85816 0.79230 0.78627 0.80379 1.20260 1.20788 1.19307 1.21282 1.01121 0.96187 0.94645 1.21842 0.94543 0.96911 1.03265 0.92970 0.92932 0.92716 0.92029 0.92285 0.92308 0.91724 0.92230 0.91910 0.91725 0.91777 0.91610 0.90976 0.91151 0.88751 0.75237 0.89991 0.90039 0.77056 0.91586 0.91826 0.91481 0.92676 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.78 16 2 C -0.13 -1.04 5.93 -26.73 -0.16 -1.19 16 3 C -0.12 -1.04 4.97 -26.73 -0.13 -1.18 16 4 C -0.11 -1.10 4.68 -26.73 -0.13 -1.22 16 5 C -0.08 -0.84 2.19 -90.62 -0.20 -1.04 16 6 C -0.12 -1.29 4.74 -26.73 -0.13 -1.42 16 7 C -0.11 -1.14 5.35 -26.73 -0.14 -1.28 16 8 C -0.11 -1.23 3.01 -91.77 -0.28 -1.50 16 9 C 0.52 7.84 5.64 -10.99 -0.06 7.78 16 10 O -0.55 -9.67 13.66 5.56 0.08 -9.59 16 11 N -0.71 -11.58 5.42 -61.47 -0.33 -11.92 16 12 C 0.11 2.00 6.15 -5.19 -0.03 1.97 16 13 C 0.43 9.79 7.85 -10.98 -0.09 9.70 16 14 O -0.60 -15.21 15.24 5.55 0.08 -15.12 16 15 N -0.55 -13.63 5.29 -10.96 -0.06 -13.69 16 16 C -0.30 -8.28 9.68 -14.94 -0.14 -8.42 16 17 H 0.11 2.97 7.16 -52.48 -0.38 2.59 16 18 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 19 N -0.89 -23.92 13.05 55.50 0.72 -23.19 16 20 Si 0.93 20.52 29.55 -169.99 -5.02 15.50 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 24 C -0.09 -1.01 5.09 -26.74 -0.14 -1.15 16 25 C -0.13 -1.45 4.91 -26.73 -0.13 -1.58 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.59 6.56 -51.93 -0.34 0.25 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.85 7.22 -51.93 -0.37 0.48 16 37 H 0.07 0.66 6.56 -51.93 -0.34 0.32 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.75 7.57 -51.93 -0.39 0.36 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.41 6.65 6.86 -40.82 -0.28 6.37 16 42 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 43 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 44 H 0.40 9.46 7.90 -40.82 -0.32 9.14 16 45 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 48 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.09 1.35 5.51 -51.93 -0.29 1.06 16 LS Contribution 383.02 15.07 5.77 5.77 Total: -1.00 -29.77 383.02 -8.85 -38.62 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -8.61 Total: 14.36 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -1.48 Total: -0.74 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 0.33 Total: -48.80 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: 0.16 Total: -24.72 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.77 -8.85 -38.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344120565.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.481 kcal (2) G-P(sol) polarization free energy of solvation -29.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds