Wall clock time and date at job start Tue Mar 31 2020 11:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46909 * 2 1 4 4 C 1.52998 * 109.47261 * 240.00373 * 2 1 3 5 5 C 1.50700 * 109.47027 * 59.99543 * 4 2 1 6 6 H 1.07998 * 120.00551 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99934 * 180.02562 * 5 4 2 8 8 N 1.31508 * 120.00011 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99960 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47240 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47358 * 119.99858 * 9 7 5 12 12 H 1.48498 * 109.46835 * 239.99841 * 9 7 5 13 13 C 1.52998 * 109.47501 * 119.99963 * 2 1 3 14 14 N 1.46497 * 109.46922 * 300.00181 * 13 2 1 15 15 C 1.34784 * 119.99966 * 180.02562 * 14 13 2 16 16 O 1.21593 * 119.99720 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00158 * 180.02562 * 15 14 13 18 18 C 1.49619 * 126.07201 * 359.97045 * 17 15 14 19 19 C 1.51524 * 102.49179 * 154.37393 * 18 17 15 20 20 H 1.08997 * 111.12721 * 288.13834 * 19 18 17 21 21 C 1.51560 * 123.79597 * 151.79915 * 19 18 17 22 22 C 1.56333 * 101.81229 * 207.81632 * 21 19 18 23 23 C 1.56394 * 105.77878 * 25.22195 * 22 21 19 24 24 H 1.09001 * 110.34340 * 125.72439 * 23 22 21 25 25 O 1.42897 * 110.88720 * 248.58907 * 23 22 21 26 26 C 1.49702 * 103.79866 * 7.28878 * 23 22 21 27 27 H 1.09002 * 108.54930 * 77.65896 * 26 23 22 28 28 C 1.49287 * 126.07200 * 179.97438 * 17 15 14 29 29 H 1.09001 * 109.46713 * 299.99965 * 1 2 3 30 30 H 1.08996 * 109.46916 * 59.99750 * 1 2 3 31 31 H 1.08998 * 109.46929 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47172 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47024 * 300.00246 * 3 2 1 34 34 H 1.09000 * 109.46909 * 60.00294 * 3 2 1 35 35 H 1.08997 * 109.47779 * 179.97438 * 4 2 1 36 36 H 1.09006 * 109.46976 * 300.00124 * 4 2 1 37 37 H 0.96998 * 120.00329 * 179.97438 * 8 7 5 38 38 H 1.08998 * 109.47193 * 180.02562 * 13 2 1 39 39 H 1.08997 * 109.46658 * 60.00145 * 13 2 1 40 40 H 0.96998 * 120.00251 * 359.97438 * 14 13 2 41 41 H 1.09002 * 110.80364 * 36.12902 * 18 17 15 42 42 H 1.08995 * 110.97027 * 272.69860 * 18 17 15 43 43 H 1.08991 * 110.96594 * 325.94497 * 21 19 18 44 44 H 1.09005 * 110.96115 * 89.69162 * 21 19 18 45 45 H 1.09000 * 110.19429 * 144.51390 * 22 21 19 46 46 H 1.09006 * 110.19054 * 266.28902 * 22 21 19 47 47 H 0.96700 * 114.00803 * 294.54998 * 25 23 22 48 48 H 1.09000 * 110.39463 * 54.78778 * 28 17 15 49 49 H 1.09006 * 110.39580 * 292.39209 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0107 -2.4797 6 1 0.9170 0.8676 -2.3806 7 6 1.8703 -0.4820 -3.7320 8 7 2.6264 -1.5512 -3.8528 9 14 1.2481 0.3990 -5.2572 10 1 0.4235 1.5659 -4.8530 11 1 2.4033 0.8649 -6.0656 12 1 0.4225 -0.5339 -6.0654 13 6 2.0401 -0.7212 1.2492 14 7 1.5518 -0.0306 2.4453 15 6 1.8779 -0.4908 3.6695 16 8 2.5770 -1.4793 3.7810 17 7 1.4282 0.1442 4.7700 18 6 0.5640 1.3654 4.7911 19 6 -0.1370 1.2478 6.1293 20 1 -0.8783 0.4488 6.1156 21 6 -0.6298 2.4363 6.9302 22 6 -0.5622 1.8872 8.3924 23 6 0.5229 0.7611 8.3740 24 1 1.2798 0.9518 9.1348 25 8 -0.0723 -0.5233 8.5687 26 6 1.1185 0.8615 7.0042 27 1 1.8059 1.7073 6.9862 28 6 1.7040 -0.2459 6.1843 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 -0.7208 -1.2496 36 1 1.6767 -1.7489 -1.2493 37 1 2.8602 -1.8830 -4.7337 38 1 3.1301 -0.7208 1.2494 39 1 1.6768 -1.7489 1.2491 40 1 0.9944 0.7582 2.3564 41 1 -0.1566 1.3439 3.9735 42 1 1.1681 2.2716 4.7489 43 1 0.0324 3.2929 6.8045 44 1 -1.6533 2.6932 6.6572 45 1 -0.2726 2.6819 9.0798 46 1 -1.5272 1.4719 8.6832 47 1 -0.4737 -0.6429 9.4403 48 1 2.7780 -0.3184 6.3558 49 1 1.2162 -1.1919 6.4195 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358738019.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:05 Heat of formation + Delta-G solvation = -77.212285 kcal Electronic energy + Delta-G solvation = -26578.639291 eV Core-core repulsion = 22926.548668 eV Total energy + Delta-G solvation = -3652.090624 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.03842 -39.27927 -37.20815 -36.43760 -34.26884 -33.49089 -32.05340 -30.24017 -29.38696 -27.06494 -26.47432 -26.37905 -25.74275 -23.75650 -22.53691 -20.75756 -20.33880 -19.74450 -18.50740 -17.89770 -17.27325 -16.44603 -16.22891 -15.64837 -15.37129 -14.98173 -14.76462 -14.48811 -14.27754 -13.81787 -13.62429 -13.38639 -13.21243 -12.92979 -12.71971 -12.59062 -12.33701 -12.04404 -12.03148 -11.80300 -11.52570 -11.36210 -11.10827 -11.06425 -10.99669 -10.81332 -10.61350 -10.60034 -10.35990 -10.24337 -10.20505 -9.90783 -9.83841 -9.16821 -8.88426 -8.85038 -8.36547 -8.33637 -5.97465 -3.98541 2.63142 3.31615 3.39599 3.41945 3.43413 3.53155 3.85328 4.10026 4.26145 4.38049 4.47656 4.59439 4.65983 4.86575 4.93646 5.12680 5.14726 5.24304 5.32989 5.37769 5.38094 5.47532 5.55194 5.57133 5.69001 5.72195 5.75210 5.79481 5.89101 5.99808 6.08970 6.21949 6.28532 6.35372 6.46360 6.65225 6.66437 6.87002 7.10287 7.11165 7.15552 7.20686 7.25071 7.68030 7.80530 8.01562 8.20084 8.43575 8.86312 9.06524 9.64337 11.14079 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.032146 B = 0.002523 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.810668 B =11093.840764 C =11612.062426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.072 4.072 3 C -0.125 4.125 4 C 0.035 3.965 5 C -0.509 4.509 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.147 3.853 14 N -0.735 5.735 15 C 0.719 3.281 16 O -0.591 6.591 17 N -0.648 5.648 18 C 0.116 3.884 19 C -0.117 4.117 20 H 0.094 0.906 21 C -0.102 4.102 22 C -0.154 4.154 23 C 0.124 3.876 24 H 0.063 0.937 25 O -0.557 6.557 26 C -0.120 4.120 27 H 0.087 0.913 28 C 0.155 3.845 29 H 0.027 0.973 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.027 0.973 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.259 0.741 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.393 0.607 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.377 0.623 48 H 0.069 0.931 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.343 9.957 26.490 29.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.072 4.072 3 C -0.183 4.183 4 C -0.002 4.002 5 C -0.548 4.548 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C 0.023 3.977 14 N -0.391 5.391 15 C 0.421 3.579 16 O -0.470 6.470 17 N -0.389 5.389 18 C -0.007 4.007 19 C -0.136 4.136 20 H 0.112 0.888 21 C -0.140 4.140 22 C -0.192 4.192 23 C 0.064 3.936 24 H 0.081 0.919 25 O -0.363 6.363 26 C -0.139 4.139 27 H 0.105 0.895 28 C 0.033 3.967 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.046 0.954 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.228 0.772 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.224 0.776 48 H 0.087 0.913 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.467 8.958 25.698 27.972 hybrid contribution -0.740 0.947 -0.412 1.270 sum -7.207 9.905 25.286 28.097 Atomic orbital electron populations 1.21746 0.95343 1.01143 1.00043 1.20909 0.95435 0.95848 0.95046 1.21748 1.00540 0.95934 1.00056 1.19099 0.96411 0.95273 0.89431 1.21220 1.31048 1.11990 0.90498 0.92224 1.25021 0.95362 0.95105 0.99086 1.69975 1.37026 1.23072 1.23295 0.86594 0.78578 0.79665 0.83484 1.19829 1.21158 1.21159 1.21494 0.98651 0.95664 0.81863 1.45378 1.56132 1.33234 1.04330 1.15513 0.80194 0.82413 0.79776 1.90919 1.43069 1.27466 1.85502 1.48810 1.54861 1.30254 1.04967 1.21660 0.93077 0.88378 0.97549 1.22595 0.97203 0.99758 0.94064 0.88771 1.21843 1.01785 0.96633 0.93737 1.23805 0.99715 0.98289 0.97384 1.21650 0.93322 0.83202 0.95406 0.91872 1.86610 1.77358 1.33179 1.39129 1.21792 0.97984 0.99930 0.94234 0.89500 1.20594 1.00067 0.97387 0.78654 0.95442 0.91478 0.93353 0.93365 0.91489 0.95409 0.96279 0.96274 0.93112 0.92039 0.92038 0.77207 0.90609 0.91139 0.90847 0.90893 0.90852 0.90539 0.77580 0.91301 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 8.05 37.16 0.30 -1.97 16 2 C -0.07 -1.41 0.54 -154.51 -0.08 -1.49 16 3 C -0.13 -2.26 8.05 37.16 0.30 -1.96 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.65 7.65 -34.44 -0.26 -13.91 16 6 H 0.06 1.54 5.68 -52.49 -0.30 1.24 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 9 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.15 2.77 4.56 -4.04 -0.02 2.76 16 14 N -0.74 -11.89 4.93 -65.23 -0.32 -12.22 16 15 C 0.72 12.51 8.52 -86.91 -0.74 11.77 16 16 O -0.59 -12.81 16.71 5.28 0.09 -12.72 16 17 N -0.65 -8.65 3.43 -177.29 -0.61 -9.26 16 18 C 0.12 1.09 6.39 -3.05 -0.02 1.07 16 19 C -0.12 -0.92 3.10 -89.45 -0.28 -1.20 16 20 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 21 C -0.10 -0.55 6.63 -25.67 -0.17 -0.72 16 22 C -0.15 -0.71 6.78 -23.12 -0.16 -0.87 16 23 C 0.12 0.76 4.17 -26.54 -0.11 0.65 16 24 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 25 O -0.56 -4.07 12.89 -35.23 -0.45 -4.52 16 26 C -0.12 -0.98 2.37 -91.24 -0.22 -1.20 16 27 H 0.09 0.64 8.00 -51.93 -0.42 0.22 16 28 C 0.16 1.84 6.70 -4.12 -0.03 1.81 16 29 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 30 H 0.07 1.29 6.62 -51.93 -0.34 0.94 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 34 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.39 5.43 4.70 -40.82 -0.19 5.24 16 41 H 0.08 0.68 7.34 -51.93 -0.38 0.30 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.08 0.34 8.03 -51.93 -0.42 -0.08 16 47 H 0.38 1.11 9.12 45.56 0.42 1.52 16 48 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 49 H 0.07 1.00 7.80 -51.93 -0.41 0.59 16 LS Contribution 376.88 15.07 5.68 5.68 Total: -1.00 -33.81 376.88 -9.32 -43.13 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -7.72 Total: 2.55 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -1.70 Total: -3.02 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -0.19 Total: -47.42 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.37 Total: -17.24 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.81 -9.32 -43.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358738019.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.083 kcal (2) G-P(sol) polarization free energy of solvation -33.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds