Wall clock time and date at job start Tue Mar 31 2020 11:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46909 * 2 1 4 4 C 1.52998 * 109.47261 * 240.00373 * 2 1 3 5 5 C 1.50700 * 109.47027 * 59.99543 * 4 2 1 6 6 H 1.07998 * 120.00551 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99934 * 180.02562 * 5 4 2 8 8 N 1.31508 * 120.00011 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99960 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47240 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47358 * 119.99858 * 9 7 5 12 12 H 1.48498 * 109.46835 * 239.99841 * 9 7 5 13 13 C 1.52998 * 109.47501 * 119.99963 * 2 1 3 14 14 N 1.46497 * 109.46922 * 300.00181 * 13 2 1 15 15 C 1.34784 * 119.99966 * 180.02562 * 14 13 2 16 16 O 1.21593 * 119.99720 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00158 * 180.02562 * 15 14 13 18 18 C 1.49619 * 126.07201 * 359.97045 * 17 15 14 19 19 C 1.51524 * 102.49179 * 154.37393 * 18 17 15 20 20 H 1.08997 * 111.12721 * 288.13834 * 19 18 17 21 21 C 1.51560 * 123.79597 * 151.79915 * 19 18 17 22 22 C 1.56333 * 101.81229 * 207.81632 * 21 19 18 23 23 C 1.56394 * 105.77878 * 25.22195 * 22 21 19 24 24 H 1.09001 * 110.34340 * 125.72439 * 23 22 21 25 25 O 1.42897 * 110.88720 * 248.58907 * 23 22 21 26 26 C 1.49702 * 103.79866 * 7.28878 * 23 22 21 27 27 H 1.09002 * 108.54930 * 77.65896 * 26 23 22 28 28 C 1.49287 * 126.07200 * 179.97438 * 17 15 14 29 29 H 1.09001 * 109.46713 * 299.99965 * 1 2 3 30 30 H 1.08996 * 109.46916 * 59.99750 * 1 2 3 31 31 H 1.08998 * 109.46929 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47172 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47024 * 300.00246 * 3 2 1 34 34 H 1.09000 * 109.46909 * 60.00294 * 3 2 1 35 35 H 1.08997 * 109.47779 * 179.97438 * 4 2 1 36 36 H 1.09006 * 109.46976 * 300.00124 * 4 2 1 37 37 H 0.96998 * 120.00329 * 179.97438 * 8 7 5 38 38 H 1.08998 * 109.47193 * 180.02562 * 13 2 1 39 39 H 1.08997 * 109.46658 * 60.00145 * 13 2 1 40 40 H 0.96998 * 120.00251 * 359.97438 * 14 13 2 41 41 H 1.09002 * 110.80364 * 36.12902 * 18 17 15 42 42 H 1.08995 * 110.97027 * 272.69860 * 18 17 15 43 43 H 1.08991 * 110.96594 * 325.94497 * 21 19 18 44 44 H 1.09005 * 110.96115 * 89.69162 * 21 19 18 45 45 H 1.09000 * 110.19429 * 144.51390 * 22 21 19 46 46 H 1.09006 * 110.19054 * 266.28902 * 22 21 19 47 47 H 0.96700 * 114.00803 * 294.54998 * 25 23 22 48 48 H 1.09000 * 110.39463 * 54.78778 * 28 17 15 49 49 H 1.09006 * 110.39580 * 292.39209 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0107 -2.4797 6 1 0.9170 0.8676 -2.3806 7 6 1.8703 -0.4820 -3.7320 8 7 2.6264 -1.5512 -3.8528 9 14 1.2481 0.3990 -5.2572 10 1 0.4235 1.5659 -4.8530 11 1 2.4033 0.8649 -6.0656 12 1 0.4225 -0.5339 -6.0654 13 6 2.0401 -0.7212 1.2492 14 7 1.5518 -0.0306 2.4453 15 6 1.8779 -0.4908 3.6695 16 8 2.5770 -1.4793 3.7810 17 7 1.4282 0.1442 4.7700 18 6 0.5640 1.3654 4.7911 19 6 -0.1370 1.2478 6.1293 20 1 -0.8783 0.4488 6.1156 21 6 -0.6298 2.4363 6.9302 22 6 -0.5622 1.8872 8.3924 23 6 0.5229 0.7611 8.3740 24 1 1.2798 0.9518 9.1348 25 8 -0.0723 -0.5233 8.5687 26 6 1.1185 0.8615 7.0042 27 1 1.8059 1.7073 6.9862 28 6 1.7040 -0.2459 6.1843 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 -0.7208 -1.2496 36 1 1.6767 -1.7489 -1.2493 37 1 2.8602 -1.8830 -4.7337 38 1 3.1301 -0.7208 1.2494 39 1 1.6768 -1.7489 1.2491 40 1 0.9944 0.7582 2.3564 41 1 -0.1566 1.3439 3.9735 42 1 1.1681 2.2716 4.7489 43 1 0.0324 3.2929 6.8045 44 1 -1.6533 2.6932 6.6572 45 1 -0.2726 2.6819 9.0798 46 1 -1.5272 1.4719 8.6832 47 1 -0.4737 -0.6429 9.4403 48 1 2.7780 -0.3184 6.3558 49 1 1.2162 -1.1919 6.4195 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358738019.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:04 Heat of formation + Delta-G solvation = -101.158873 kcal Electronic energy + Delta-G solvation = -26579.677693 eV Core-core repulsion = 22926.548668 eV Total energy + Delta-G solvation = -3653.129026 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.87285 -40.47858 -38.69949 -37.26419 -35.28645 -34.97175 -33.88735 -31.04543 -30.20830 -29.01679 -27.96750 -27.53506 -26.68531 -25.08381 -24.03895 -21.35357 -21.18112 -20.80195 -19.97256 -18.79418 -18.41054 -18.23657 -17.37556 -16.88320 -16.48365 -16.05037 -15.94910 -15.62017 -15.42728 -15.10439 -14.81256 -14.69769 -14.34791 -14.01947 -14.00337 -13.93857 -13.70587 -13.21206 -13.02481 -12.88070 -12.69413 -12.59472 -12.43642 -12.34929 -12.22738 -12.08769 -11.99600 -11.94099 -11.54638 -11.52113 -11.37864 -11.12832 -10.97250 -10.84534 -10.71474 -10.51551 -10.26489 -9.55035 -8.13036 -6.20956 1.42765 1.43097 1.47130 1.55644 2.10073 2.44923 2.83477 3.01574 3.21491 3.45631 3.71938 3.80815 3.94932 3.99176 4.08169 4.18947 4.21864 4.26214 4.35689 4.50949 4.57587 4.64165 4.67869 4.70222 4.71985 4.74957 4.84736 4.92562 4.95575 5.00107 5.08575 5.11755 5.12436 5.14927 5.20195 5.35503 5.38621 5.48060 5.48175 5.49843 5.53094 5.58665 5.80352 5.90500 5.99206 6.31228 6.92405 6.95596 6.98431 7.46659 7.51757 8.99912 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.032146 B = 0.002523 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.810668 B =11093.840764 C =11612.062426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.063 4.063 3 C -0.119 4.119 4 C 0.039 3.961 5 C -0.510 4.510 6 H 0.075 0.925 7 C -0.007 4.007 8 N -0.940 5.940 9 Si 0.960 3.040 10 H -0.255 1.255 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.161 3.839 14 N -0.721 5.721 15 C 0.713 3.287 16 O -0.643 6.643 17 N -0.646 5.646 18 C 0.110 3.890 19 C -0.109 4.109 20 H 0.073 0.927 21 C -0.097 4.097 22 C -0.146 4.146 23 C 0.121 3.879 24 H 0.079 0.921 25 O -0.583 6.583 26 C -0.119 4.119 27 H 0.102 0.898 28 C 0.152 3.848 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.035 0.965 32 H 0.036 0.964 33 H 0.058 0.942 34 H 0.067 0.933 35 H -0.014 1.014 36 H -0.015 1.015 37 H 0.259 0.741 38 H 0.042 0.958 39 H 0.040 0.960 40 H 0.408 0.592 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.093 0.907 46 H 0.078 0.922 47 H 0.394 0.606 48 H 0.058 0.942 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.362 13.592 28.100 32.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.063 4.063 3 C -0.177 4.177 4 C 0.001 3.999 5 C -0.549 4.549 6 H 0.093 0.907 7 C -0.204 4.204 8 N -0.581 5.581 9 Si 0.786 3.214 10 H -0.179 1.179 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.036 3.964 14 N -0.377 5.377 15 C 0.414 3.586 16 O -0.526 6.526 17 N -0.385 5.385 18 C -0.011 4.011 19 C -0.128 4.128 20 H 0.092 0.908 21 C -0.134 4.134 22 C -0.183 4.183 23 C 0.062 3.938 24 H 0.097 0.903 25 O -0.392 6.392 26 C -0.138 4.138 27 H 0.121 0.879 28 C 0.029 3.971 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.005 0.995 36 H 0.004 0.996 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.246 0.754 41 H 0.102 0.898 42 H 0.111 0.889 43 H 0.106 0.894 44 H 0.099 0.901 45 H 0.112 0.888 46 H 0.097 0.903 47 H 0.244 0.756 48 H 0.077 0.923 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.542 12.662 27.362 31.337 hybrid contribution -0.094 -0.252 -0.820 0.863 sum -8.637 12.410 26.542 30.547 Atomic orbital electron populations 1.21676 0.93549 1.00895 1.01567 1.20706 0.96734 0.96398 0.92477 1.21675 0.99912 0.94466 1.01603 1.18983 0.94343 0.94222 0.92321 1.21608 1.30317 1.12025 0.90908 0.90737 1.25981 0.95699 0.95895 1.02819 1.70135 1.38870 1.25067 1.24024 0.85460 0.78021 0.78821 0.79120 1.17861 1.21080 1.21134 1.21088 0.97451 0.94919 0.82928 1.45010 1.56137 1.33384 1.03201 1.15704 0.80000 0.82135 0.80721 1.90879 1.45421 1.29903 1.86380 1.48894 1.54315 1.30915 1.04336 1.21984 0.93064 0.87157 0.98907 1.22537 0.96429 1.00601 0.93244 0.90810 1.21882 1.02462 0.95760 0.93342 1.23757 0.99206 0.98042 0.97325 1.21784 0.94196 0.83396 0.94417 0.90332 1.86569 1.77752 1.34064 1.40800 1.21834 0.98259 0.98456 0.95275 0.87943 1.20645 0.99557 0.98137 0.78716 0.91520 0.92206 0.94586 0.94447 0.92251 0.91411 0.99534 0.99634 0.93199 0.93924 0.94148 0.75407 0.89764 0.88874 0.89370 0.90117 0.88841 0.90291 0.75578 0.92350 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.14 8.05 71.98 0.58 -3.56 16 2 C -0.06 -2.45 0.54 -52.18 -0.03 -2.48 16 3 C -0.12 -4.09 8.05 71.98 0.58 -3.51 16 4 C 0.04 2.03 4.04 29.85 0.12 2.15 16 5 C -0.51 -27.58 7.65 25.60 0.20 -27.38 16 6 H 0.07 3.74 5.68 -2.91 -0.02 3.73 16 7 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 8 N -0.94 -57.88 13.29 21.45 0.28 -57.60 16 9 Si 0.96 43.85 29.54 68.60 2.03 45.87 16 10 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 13 C 0.16 6.25 4.56 86.38 0.39 6.65 16 14 N -0.72 -22.74 4.93 -478.53 -2.36 -25.10 16 15 C 0.71 24.95 8.52 179.05 1.53 26.48 16 16 O -0.64 -29.08 16.71 -4.01 -0.07 -29.15 16 17 N -0.65 -16.74 3.43 -833.08 -2.85 -19.60 16 18 C 0.11 1.75 6.39 85.29 0.55 2.30 16 19 C -0.11 -1.43 3.10 -10.04 -0.03 -1.47 16 20 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 21 C -0.10 -0.66 6.63 31.28 0.21 -0.45 16 22 C -0.15 -0.81 6.78 32.94 0.22 -0.58 16 23 C 0.12 1.20 4.17 30.72 0.13 1.32 16 24 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 25 O -0.58 -7.78 12.89 -148.98 -1.92 -9.70 16 26 C -0.12 -1.70 2.37 -11.19 -0.03 -1.73 16 27 H 0.10 1.17 8.00 -2.39 -0.02 1.15 16 28 C 0.15 3.59 6.70 84.78 0.57 4.15 16 29 H 0.07 1.77 6.86 -2.39 -0.02 1.76 16 30 H 0.06 2.17 6.62 -2.39 -0.02 2.15 16 31 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 2.14 6.62 -2.38 -0.02 2.12 16 34 H 0.07 1.77 6.86 -2.39 -0.02 1.75 16 35 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 36 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 37 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 38 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.41 10.14 4.70 -92.71 -0.44 9.70 16 41 H 0.08 1.22 7.34 -2.39 -0.02 1.21 16 42 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16 45 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 46 H 0.08 0.44 8.03 -2.38 -0.02 0.42 16 47 H 0.39 1.72 9.12 -74.06 -0.68 1.05 16 48 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.05 1.43 7.80 -2.38 -0.02 1.41 16 Total: -1.00 -77.58 376.88 0.39 -77.19 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -0.17 Total: 16.14 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: 5.44 Total: 1.94 kcal Atomic # 7 Polarization: -97.37 SS G_CDS: -4.93 Total: -102.29 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -1.99 Total: -38.85 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -77.58 0.39 -77.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358738019.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.967 kcal (2) G-P(sol) polarization free energy of solvation -77.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds