Wall clock time and date at job start Tue Mar 31 2020 11:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.52999 * 109.47592 * 239.99805 * 2 1 3 5 5 C 1.50706 * 109.46957 * 60.00074 * 4 2 1 6 6 H 1.07999 * 119.99816 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00340 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00347 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99775 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46867 * 90.00546 * 9 7 5 11 11 H 1.48501 * 109.47216 * 210.00404 * 9 7 5 12 12 H 1.48499 * 109.47135 * 330.00745 * 9 7 5 13 13 C 1.53006 * 109.47164 * 120.00099 * 2 1 3 14 14 N 1.46500 * 109.46998 * 300.00051 * 13 2 1 15 15 C 1.34769 * 120.00241 * 180.02562 * 14 13 2 16 16 O 1.21282 * 119.99850 * 359.97438 * 15 14 13 17 17 C 1.50702 * 120.00466 * 179.97438 * 15 14 13 18 18 H 1.09004 * 109.46923 * 59.99646 * 17 15 14 19 19 C 1.53001 * 109.46721 * 300.00057 * 17 15 14 20 20 C 1.53002 * 109.46637 * 179.97438 * 19 17 15 21 21 C 1.53006 * 109.47351 * 59.99942 * 20 19 17 22 22 C 1.53002 * 109.46886 * 300.00003 * 21 20 19 23 23 H 1.09002 * 109.46838 * 180.02562 * 22 21 20 24 24 C 1.50701 * 109.46958 * 299.99593 * 22 21 20 25 25 N 1.34776 * 120.00175 * 300.00691 * 24 22 21 26 26 O 1.21277 * 119.99990 * 120.00051 * 24 22 21 27 27 C 1.52993 * 109.47392 * 59.99543 * 22 21 20 28 28 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 29 29 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 30 30 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 33 33 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 34 34 H 1.08993 * 109.47839 * 179.97438 * 4 2 1 35 35 H 1.09000 * 109.47160 * 300.00333 * 4 2 1 36 36 H 0.96991 * 119.99882 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.47050 * 59.99996 * 13 2 1 38 38 H 1.09001 * 109.46801 * 180.02562 * 13 2 1 39 39 H 0.97010 * 119.99910 * 359.97438 * 14 13 2 40 40 H 1.08992 * 109.47129 * 299.99174 * 19 17 15 41 41 H 1.08992 * 109.47514 * 59.99777 * 19 17 15 42 42 H 1.09000 * 109.46986 * 179.97438 * 20 19 17 43 43 H 1.08996 * 109.47407 * 299.99457 * 20 19 17 44 44 H 1.09001 * 109.46611 * 59.99700 * 21 20 19 45 45 H 1.08998 * 109.46884 * 179.97438 * 21 20 19 46 46 H 0.97000 * 120.00221 * 359.97438 * 25 24 22 47 47 H 0.97001 * 119.99812 * 180.02562 * 25 24 22 48 48 H 1.08992 * 109.47399 * 179.97438 * 27 22 21 49 49 H 1.09004 * 109.46862 * 60.00135 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8705 -0.4821 -3.7320 8 7 1.4326 0.1381 -4.8058 9 14 2.9445 -2.0009 -3.9033 10 1 2.0859 -3.2117 -3.9483 11 1 3.7361 -1.9086 -5.1564 12 1 3.8651 -2.0898 -2.7416 13 6 2.0400 -0.7213 1.2493 14 7 1.5516 -0.0307 2.4454 15 6 1.8776 -0.4908 3.6695 16 8 2.5749 -1.4769 3.7808 17 6 1.3758 0.2199 4.9000 18 1 0.2857 0.2200 4.9004 19 6 1.8858 1.6624 4.8994 20 6 1.3758 2.3841 6.1484 21 6 1.8857 1.6633 7.3980 22 6 1.3756 0.2208 7.3985 23 1 1.7385 -0.2925 8.2889 24 6 -0.1314 0.2209 7.3984 25 7 -0.8053 0.8050 8.4090 26 8 -0.7378 -0.3045 6.4890 27 6 1.8856 -0.5009 6.1495 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 -0.7209 -1.2494 35 1 1.6767 -1.7489 -1.2492 36 1 1.6669 -0.1933 -5.6867 37 1 1.6767 -1.7490 1.2492 38 1 3.1300 -0.7209 1.2494 39 1 0.9942 0.7583 2.3564 40 1 2.9758 1.6623 4.8991 41 1 1.5223 2.1760 4.0095 42 1 1.7395 3.4116 6.1482 43 1 0.2858 2.3842 6.1483 44 1 2.9757 1.6633 7.3980 45 1 1.5227 2.1778 8.2877 46 1 -0.3203 1.2250 9.1365 47 1 -1.7753 0.8047 8.4091 48 1 1.5226 -1.5286 6.1501 49 1 2.9756 -0.5010 6.1496 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360422230.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:57 Heat of formation + Delta-G solvation = -115.211250 kcal Electronic energy + Delta-G solvation = -26858.682026 eV Core-core repulsion = 23204.943644 eV Total energy + Delta-G solvation = -3653.738382 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.98846 -39.42489 -37.45918 -36.71713 -34.17723 -33.57727 -32.13936 -31.22314 -31.04962 -27.78568 -26.50482 -26.29007 -24.30137 -23.55403 -22.17571 -21.79242 -20.01699 -19.66664 -18.26582 -17.55647 -17.04304 -16.72447 -16.60532 -15.91424 -15.32217 -15.08859 -14.87104 -14.34959 -14.14576 -14.11260 -13.80607 -13.52479 -13.32742 -12.86353 -12.67037 -12.59474 -12.42630 -12.35268 -12.22898 -12.05920 -11.42588 -11.21857 -11.18433 -11.06108 -10.97060 -10.85073 -10.57453 -10.47161 -10.41100 -10.06254 -9.92147 -9.89302 -9.73111 -9.63638 -9.25061 -8.94913 -8.66434 -8.50444 -6.01326 -3.98262 2.32619 2.93703 3.17955 3.34345 3.41945 3.46694 3.50627 4.30773 4.35638 4.37069 4.48695 4.65982 4.89198 4.93722 5.02974 5.06033 5.18616 5.25155 5.31664 5.42972 5.52689 5.59386 5.60609 5.66859 5.70882 5.72914 5.85727 5.88977 6.13361 6.17041 6.18378 6.20718 6.27029 6.38443 6.44479 6.57125 6.64616 6.79697 6.95902 6.97157 7.05940 7.09854 7.25019 7.41455 7.78116 7.86692 7.94934 8.52297 8.56996 9.02961 9.61638 11.11482 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.028933 B = 0.002746 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.517102 B =10194.294524 C =10337.266280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 C -0.128 4.128 4 C -0.002 4.002 5 C -0.509 4.509 6 H 0.078 0.922 7 C 0.066 3.934 8 N -0.905 5.905 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.126 3.874 14 N -0.721 5.721 15 C 0.515 3.485 16 O -0.551 6.551 17 C -0.119 4.119 18 H 0.121 0.879 19 C -0.112 4.112 20 C -0.121 4.121 21 C -0.111 4.111 22 C -0.111 4.111 23 H 0.101 0.899 24 C 0.521 3.479 25 N -0.858 5.858 26 O -0.533 6.533 27 C -0.078 4.078 28 H 0.031 0.969 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.031 0.969 34 H 0.018 0.982 35 H 0.014 0.986 36 H 0.262 0.738 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.398 0.602 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.400 0.600 47 H 0.400 0.600 48 H 0.076 0.924 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.254 6.196 29.630 30.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.063 4.063 3 C -0.185 4.185 4 C -0.040 4.040 5 C -0.547 4.547 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.544 5.544 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.002 3.998 14 N -0.373 5.373 15 C 0.301 3.699 16 O -0.429 6.429 17 C -0.140 4.140 18 H 0.139 0.861 19 C -0.150 4.150 20 C -0.158 4.158 21 C -0.149 4.149 22 C -0.132 4.132 23 H 0.119 0.881 24 C 0.307 3.693 25 N -0.422 5.422 26 O -0.409 6.409 27 C -0.116 4.116 28 H 0.050 0.950 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.050 0.950 34 H 0.036 0.964 35 H 0.032 0.968 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.234 0.766 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.228 0.772 47 H 0.230 0.770 48 H 0.095 0.905 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.956 5.084 28.814 29.275 hybrid contribution 0.078 -0.264 0.066 0.283 sum -0.878 4.820 28.880 29.293 Atomic orbital electron populations 1.21774 0.94827 1.01286 1.00729 1.20680 0.95802 0.95866 0.93968 1.21763 1.00368 0.95648 1.00699 1.19594 0.96253 0.95515 0.92662 1.21090 1.31734 1.13280 0.88627 0.90401 1.24998 0.95731 0.96753 0.95987 1.69902 1.46046 1.40599 0.97860 0.86857 0.81350 0.83955 0.77606 1.20381 1.21534 1.18985 1.21607 0.98716 0.96048 0.83379 1.46172 1.53310 1.31968 1.05811 1.20593 0.80020 0.84518 0.84734 1.90661 1.38462 1.26758 1.87026 1.21595 1.04388 0.95090 0.92918 0.86096 1.21543 1.01346 0.93768 0.98323 1.21571 1.00913 0.99201 0.94157 1.21572 1.01908 0.93008 0.98405 1.21443 0.91553 0.98733 1.01490 0.88147 1.20709 0.90582 0.76738 0.81310 1.43937 1.11061 1.61031 1.26163 1.90712 1.70463 1.44452 1.35271 1.21105 1.00853 0.99228 0.90388 0.94973 0.90942 0.93418 0.93457 0.90936 0.95042 0.96388 0.96820 0.92832 0.92000 0.91998 0.76642 0.91276 0.91256 0.91106 0.91863 0.90304 0.91512 0.77215 0.76952 0.90524 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.05 37.16 0.30 -2.05 16 2 C -0.06 -1.19 0.54 -154.51 -0.08 -1.28 16 3 C -0.13 -2.26 8.05 37.16 0.30 -1.96 16 4 C 0.00 -0.06 3.11 -27.88 -0.09 -0.14 16 5 C -0.51 -13.87 8.20 -34.44 -0.28 -14.15 16 6 H 0.08 2.24 5.92 -52.49 -0.31 1.93 16 7 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 8 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 9 Si 0.87 21.89 27.47 -169.99 -4.67 17.22 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 13 C 0.13 2.24 4.56 -4.04 -0.02 2.22 16 14 N -0.72 -10.91 4.85 -60.29 -0.29 -11.21 16 15 C 0.52 8.03 7.15 -10.99 -0.08 7.96 16 16 O -0.55 -10.59 15.98 5.56 0.09 -10.50 16 17 C -0.12 -1.41 2.23 -91.77 -0.20 -1.61 16 18 H 0.12 1.58 5.51 -51.93 -0.29 1.29 16 19 C -0.11 -1.03 5.10 -26.73 -0.14 -1.16 16 20 C -0.12 -0.82 5.70 -26.73 -0.15 -0.97 16 21 C -0.11 -0.58 5.36 -26.73 -0.14 -0.72 16 22 C -0.11 -0.78 3.01 -91.77 -0.28 -1.06 16 23 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 24 C 0.52 4.43 5.91 -10.99 -0.06 4.36 16 25 N -0.86 -3.86 8.77 31.22 0.27 -3.59 16 26 O -0.53 -7.00 14.49 5.56 0.08 -6.92 16 27 C -0.08 -0.83 3.66 -26.74 -0.10 -0.93 16 28 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 29 H 0.07 1.46 6.62 -51.93 -0.34 1.12 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.44 6.62 -51.93 -0.34 1.09 16 33 H 0.03 0.45 6.86 -51.93 -0.36 0.10 16 34 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 35 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.40 5.26 5.58 -40.82 -0.23 5.03 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.62 7.56 -51.93 -0.39 0.23 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.47 7.22 -51.93 -0.37 0.10 16 44 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.20 7.57 -51.93 -0.39 -0.20 16 46 H 0.40 0.59 8.25 -40.82 -0.34 0.25 16 47 H 0.40 1.61 8.93 -40.82 -0.36 1.25 16 48 H 0.08 0.99 8.06 -51.93 -0.42 0.57 16 49 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 LS Contribution 370.25 15.07 5.58 5.58 Total: -1.00 -34.69 370.25 -7.53 -42.22 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -8.24 Total: 3.70 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -1.12 Total: -9.70 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.75 Total: -41.61 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: 0.17 Total: -17.42 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.69 -7.53 -42.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360422230.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.987 kcal (2) G-P(sol) polarization free energy of solvation -34.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds