Wall clock time and date at job start Tue Mar 31 2020 11:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.52999 * 109.47592 * 239.99805 * 2 1 3 5 5 C 1.50706 * 109.46957 * 60.00074 * 4 2 1 6 6 H 1.07999 * 119.99816 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00340 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00347 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99775 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46867 * 90.00546 * 9 7 5 11 11 H 1.48501 * 109.47216 * 210.00404 * 9 7 5 12 12 H 1.48499 * 109.47135 * 330.00745 * 9 7 5 13 13 C 1.53006 * 109.47164 * 120.00099 * 2 1 3 14 14 N 1.46500 * 109.46998 * 300.00051 * 13 2 1 15 15 C 1.34769 * 120.00241 * 180.02562 * 14 13 2 16 16 O 1.21282 * 119.99850 * 359.97438 * 15 14 13 17 17 C 1.50702 * 120.00466 * 179.97438 * 15 14 13 18 18 H 1.09004 * 109.46923 * 59.99646 * 17 15 14 19 19 C 1.53001 * 109.46721 * 300.00057 * 17 15 14 20 20 C 1.53002 * 109.46637 * 179.97438 * 19 17 15 21 21 C 1.53006 * 109.47351 * 59.99942 * 20 19 17 22 22 C 1.53002 * 109.46886 * 300.00003 * 21 20 19 23 23 H 1.09002 * 109.46838 * 180.02562 * 22 21 20 24 24 C 1.50701 * 109.46958 * 299.99593 * 22 21 20 25 25 N 1.34776 * 120.00175 * 300.00691 * 24 22 21 26 26 O 1.21277 * 119.99990 * 120.00051 * 24 22 21 27 27 C 1.52993 * 109.47392 * 59.99543 * 22 21 20 28 28 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 29 29 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 30 30 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 33 33 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 34 34 H 1.08993 * 109.47839 * 179.97438 * 4 2 1 35 35 H 1.09000 * 109.47160 * 300.00333 * 4 2 1 36 36 H 0.96991 * 119.99882 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.47050 * 59.99996 * 13 2 1 38 38 H 1.09001 * 109.46801 * 180.02562 * 13 2 1 39 39 H 0.97010 * 119.99910 * 359.97438 * 14 13 2 40 40 H 1.08992 * 109.47129 * 299.99174 * 19 17 15 41 41 H 1.08992 * 109.47514 * 59.99777 * 19 17 15 42 42 H 1.09000 * 109.46986 * 179.97438 * 20 19 17 43 43 H 1.08996 * 109.47407 * 299.99457 * 20 19 17 44 44 H 1.09001 * 109.46611 * 59.99700 * 21 20 19 45 45 H 1.08998 * 109.46884 * 179.97438 * 21 20 19 46 46 H 0.97000 * 120.00221 * 359.97438 * 25 24 22 47 47 H 0.97001 * 119.99812 * 180.02562 * 25 24 22 48 48 H 1.08992 * 109.47399 * 179.97438 * 27 22 21 49 49 H 1.09004 * 109.46862 * 60.00135 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8705 -0.4821 -3.7320 8 7 1.4326 0.1381 -4.8058 9 14 2.9445 -2.0009 -3.9033 10 1 2.0859 -3.2117 -3.9483 11 1 3.7361 -1.9086 -5.1564 12 1 3.8651 -2.0898 -2.7416 13 6 2.0400 -0.7213 1.2493 14 7 1.5516 -0.0307 2.4454 15 6 1.8776 -0.4908 3.6695 16 8 2.5749 -1.4769 3.7808 17 6 1.3758 0.2199 4.9000 18 1 0.2857 0.2200 4.9004 19 6 1.8858 1.6624 4.8994 20 6 1.3758 2.3841 6.1484 21 6 1.8857 1.6633 7.3980 22 6 1.3756 0.2208 7.3985 23 1 1.7385 -0.2925 8.2889 24 6 -0.1314 0.2209 7.3984 25 7 -0.8053 0.8050 8.4090 26 8 -0.7378 -0.3045 6.4890 27 6 1.8856 -0.5009 6.1495 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 -0.7209 -1.2494 35 1 1.6767 -1.7489 -1.2492 36 1 1.6669 -0.1933 -5.6867 37 1 1.6767 -1.7490 1.2492 38 1 3.1300 -0.7209 1.2494 39 1 0.9942 0.7583 2.3564 40 1 2.9758 1.6623 4.8991 41 1 1.5223 2.1760 4.0095 42 1 1.7395 3.4116 6.1482 43 1 0.2858 2.3842 6.1483 44 1 2.9757 1.6633 7.3980 45 1 1.5227 2.1778 8.2877 46 1 -0.3203 1.2250 9.1365 47 1 -1.7753 0.8047 8.4091 48 1 1.5226 -1.5286 6.1501 49 1 2.9756 -0.5010 6.1496 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360422230.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:56 Heat of formation + Delta-G solvation = -141.030922 kcal Electronic energy + Delta-G solvation = -26859.801651 eV Core-core repulsion = 23204.943644 eV Total energy + Delta-G solvation = -3654.858007 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.79172 -40.55369 -38.81300 -37.66013 -35.22743 -34.76558 -34.00932 -31.99771 -31.75671 -29.72082 -28.01572 -27.68327 -25.06854 -24.74790 -23.63427 -22.50002 -21.20076 -20.30482 -19.78879 -18.92039 -18.28913 -17.77577 -17.33052 -17.01690 -16.54176 -16.25619 -15.90810 -15.68280 -15.39623 -15.27714 -14.93776 -14.77118 -14.52446 -14.24059 -14.20206 -13.87070 -13.59735 -13.26932 -13.08081 -12.99923 -12.91820 -12.85368 -12.62526 -12.32818 -12.18228 -12.10453 -11.82836 -11.78143 -11.56228 -11.54079 -11.29492 -11.09909 -10.94069 -10.71826 -10.67114 -10.63266 -10.40841 -10.02524 -8.23649 -6.23687 1.34593 1.36973 1.47431 1.67110 1.75052 2.28265 2.37884 2.68989 3.11600 3.58477 3.73143 3.83000 3.89919 4.02897 4.04338 4.13888 4.20027 4.27818 4.31253 4.46511 4.55093 4.61929 4.67913 4.68182 4.73680 4.81205 4.92357 4.99614 5.05683 5.06928 5.08256 5.17505 5.23677 5.26382 5.27564 5.34294 5.35671 5.37941 5.46764 5.49851 5.55041 5.66661 5.74655 5.99842 6.36779 6.55935 6.60119 6.82778 7.28967 7.39001 7.45741 8.91970 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.028933 B = 0.002746 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.517102 B =10194.294524 C =10337.266280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.057 4.057 3 C -0.122 4.122 4 C -0.003 4.003 5 C -0.502 4.502 6 H 0.053 0.947 7 C 0.006 3.994 8 N -0.950 5.950 9 Si 0.934 3.066 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.253 1.253 13 C 0.138 3.862 14 N -0.712 5.712 15 C 0.510 3.490 16 O -0.591 6.591 17 C -0.110 4.110 18 H 0.113 0.887 19 C -0.111 4.111 20 C -0.119 4.119 21 C -0.107 4.107 22 C -0.104 4.104 23 H 0.127 0.873 24 C 0.518 3.482 25 N -0.837 5.837 26 O -0.588 6.588 27 C -0.079 4.079 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.041 0.959 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.067 0.933 34 H 0.016 0.984 35 H 0.010 0.990 36 H 0.263 0.737 37 H 0.048 0.952 38 H 0.055 0.945 39 H 0.409 0.591 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.056 0.944 44 H 0.088 0.912 45 H 0.100 0.900 46 H 0.418 0.582 47 H 0.405 0.595 48 H 0.045 0.955 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.662 7.303 33.015 33.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.058 4.058 3 C -0.179 4.179 4 C -0.041 4.041 5 C -0.540 4.540 6 H 0.071 0.929 7 C -0.190 4.190 8 N -0.592 5.592 9 Si 0.759 3.241 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.177 1.177 13 C 0.013 3.987 14 N -0.364 5.364 15 C 0.299 3.701 16 O -0.471 6.471 17 C -0.131 4.131 18 H 0.130 0.870 19 C -0.149 4.149 20 C -0.156 4.156 21 C -0.145 4.145 22 C -0.125 4.125 23 H 0.145 0.855 24 C 0.304 3.696 25 N -0.401 5.401 26 O -0.469 6.469 27 C -0.117 4.117 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.034 0.966 35 H 0.029 0.971 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.247 0.753 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.106 0.894 45 H 0.118 0.882 46 H 0.249 0.751 47 H 0.236 0.764 48 H 0.063 0.937 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.375 6.240 32.268 32.868 hybrid contribution -0.168 -0.571 -0.931 1.105 sum -0.543 5.669 31.338 31.851 Atomic orbital electron populations 1.21703 0.94191 1.01074 1.01149 1.20549 0.96254 0.96333 0.92654 1.21683 1.00314 0.94651 1.01242 1.19566 0.95987 0.95381 0.93178 1.21354 1.30290 1.12293 0.90031 0.92890 1.25817 0.97431 0.99862 0.95877 1.70034 1.48119 1.42627 0.98426 0.85903 0.79889 0.80380 0.77946 1.19855 1.21237 1.17658 1.21269 0.98216 0.95396 0.83771 1.46039 1.53241 1.32091 1.05056 1.21370 0.79106 0.84021 0.85639 1.90638 1.40356 1.28562 1.87588 1.21581 1.03629 0.96606 0.91253 0.86984 1.21583 1.01332 0.91880 1.00087 1.21580 1.00500 1.00022 0.93496 1.21628 1.02505 0.91350 0.98982 1.21431 0.90600 1.00076 1.00393 0.85544 1.20974 0.91200 0.76253 0.81207 1.43757 1.11420 1.59415 1.25459 1.90697 1.71472 1.47098 1.37593 1.21075 1.00663 0.98029 0.91931 0.91694 0.93322 0.93964 0.93492 0.93440 0.91410 0.96601 0.97120 0.92816 0.93334 0.92635 0.75300 0.91235 0.91082 0.89210 0.92531 0.89361 0.88181 0.75076 0.76437 0.93653 0.90638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.47 8.05 71.98 0.58 -3.89 16 2 C -0.06 -2.16 0.54 -52.18 -0.03 -2.19 16 3 C -0.12 -4.20 8.05 71.98 0.58 -3.62 16 4 C 0.00 -0.15 3.11 29.85 0.09 -0.06 16 5 C -0.50 -27.86 8.20 25.60 0.21 -27.65 16 6 H 0.05 3.16 5.92 -2.91 -0.02 3.14 16 7 C 0.01 0.37 5.47 84.65 0.46 0.84 16 8 N -0.95 -59.39 13.96 21.45 0.30 -59.09 16 9 Si 0.93 45.43 27.47 68.60 1.88 47.32 16 10 H -0.27 -12.99 7.11 99.48 0.71 -12.29 16 11 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 12 H -0.25 -11.67 6.54 99.48 0.65 -11.02 16 13 C 0.14 4.82 4.56 86.38 0.39 5.21 16 14 N -0.71 -20.81 4.85 -463.05 -2.25 -23.06 16 15 C 0.51 15.76 7.15 87.66 0.63 16.38 16 16 O -0.59 -22.98 15.98 -3.04 -0.05 -23.02 16 17 C -0.11 -2.51 2.23 -11.54 -0.03 -2.53 16 18 H 0.11 2.89 5.51 -2.38 -0.01 2.87 16 19 C -0.11 -1.78 5.10 30.60 0.16 -1.63 16 20 C -0.12 -1.20 5.70 30.60 0.17 -1.02 16 21 C -0.11 -0.68 5.36 30.60 0.16 -0.51 16 22 C -0.10 -1.19 3.01 -11.54 -0.03 -1.23 16 23 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 24 C 0.52 7.80 5.91 87.66 0.52 8.32 16 25 N -0.84 -5.08 8.77 -173.54 -1.52 -6.60 16 26 O -0.59 -15.24 14.49 -3.02 -0.04 -15.29 16 27 C -0.08 -1.63 3.66 30.59 0.11 -1.52 16 28 H 0.06 1.88 6.86 -2.39 -0.02 1.87 16 29 H 0.05 1.98 6.62 -2.39 -0.02 1.97 16 30 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.05 1.88 6.62 -2.39 -0.02 1.87 16 33 H 0.07 1.82 6.86 -2.39 -0.02 1.80 16 34 H 0.02 0.75 7.20 -2.39 -0.02 0.73 16 35 H 0.01 0.50 7.57 -2.39 -0.02 0.48 16 36 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 37 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.41 10.00 5.58 -92.70 -0.52 9.49 16 40 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.07 1.10 7.56 -2.39 -0.02 1.08 16 42 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.06 0.68 7.22 -2.39 -0.02 0.66 16 44 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.10 0.03 7.57 -2.39 -0.02 0.01 16 46 H 0.42 -0.47 8.25 -92.71 -0.76 -1.24 16 47 H 0.40 2.27 8.93 -92.71 -0.83 1.44 16 48 H 0.04 1.20 8.06 -2.39 -0.02 1.19 16 49 H 0.07 1.55 8.10 -2.38 -0.02 1.53 16 Total: -1.00 -78.75 370.25 1.11 -77.64 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -1.19 Total: 17.22 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: 3.98 Total: -15.10 kcal Atomic # 7 Polarization: -85.29 SS G_CDS: -3.47 Total: -88.76 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -0.09 Total: -38.31 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.88 Total: 47.32 kcal Total: -78.75 1.11 -77.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360422230.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.394 kcal (2) G-P(sol) polarization free energy of solvation -78.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds