Wall clock time and date at job start Tue Mar 31 2020 11:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47210 * 2 1 4 4 C 1.53002 * 109.46865 * 307.10446 * 3 2 1 5 5 C 1.52999 * 109.47105 * 187.10529 * 3 2 1 6 6 N 1.46506 * 109.47214 * 67.10311 * 3 2 1 7 7 C 1.46499 * 120.00029 * 250.25880 * 6 3 2 8 8 C 1.50703 * 109.46647 * 97.41734 * 7 6 3 9 9 H 1.08001 * 120.00480 * 5.59001 * 8 7 6 10 10 C 1.37882 * 119.99859 * 185.87241 * 8 7 6 11 11 N 1.31509 * 119.99839 * 179.72037 * 10 8 7 12 12 Si 1.86800 * 119.99991 * 359.72208 * 10 8 7 13 13 H 1.48500 * 109.47008 * 89.99965 * 12 10 8 14 14 H 1.48492 * 109.47008 * 210.00326 * 12 10 8 15 15 H 1.48506 * 109.46754 * 330.00119 * 12 10 8 16 16 C 1.34769 * 119.99552 * 70.26565 * 6 3 2 17 17 O 1.21284 * 119.99568 * 177.00394 * 16 6 3 18 18 C 1.50698 * 120.00583 * 357.00168 * 16 6 3 19 19 C 1.52998 * 109.47558 * 196.26001 * 18 16 6 20 20 H 1.09001 * 109.29875 * 304.58756 * 19 18 16 21 21 C 1.52920 * 109.30233 * 184.99965 * 19 18 16 22 22 C 1.53339 * 108.67470 * 188.93643 * 21 19 18 23 23 C 1.53066 * 108.42635 * 67.53209 * 22 21 19 24 24 C 1.50173 * 109.89120 * 311.09942 * 23 22 21 25 25 O 1.21283 * 118.24777 * 197.56292 * 24 23 22 26 26 N 1.33355 * 123.51014 * 17.58144 * 24 23 22 27 27 H 1.09001 * 109.47092 * 298.10015 * 1 2 3 28 28 H 1.08996 * 109.46898 * 58.09631 * 1 2 3 29 29 H 1.08992 * 109.46910 * 178.10334 * 1 2 3 30 30 H 1.08994 * 109.47101 * 239.99428 * 2 1 3 31 31 H 1.09002 * 109.46580 * 119.99691 * 2 1 3 32 32 H 1.09001 * 109.47208 * 184.01045 * 4 3 2 33 33 H 1.08997 * 109.47136 * 304.01401 * 4 3 2 34 34 H 1.08998 * 109.47030 * 64.01399 * 4 3 2 35 35 H 1.08994 * 109.46858 * 326.79029 * 5 3 2 36 36 H 1.09002 * 109.47005 * 86.79207 * 5 3 2 37 37 H 1.08997 * 109.47220 * 206.79000 * 5 3 2 38 38 H 1.09001 * 109.47285 * 337.41743 * 7 6 3 39 39 H 1.08999 * 109.47321 * 217.41386 * 7 6 3 40 40 H 0.97005 * 119.99779 * 179.97438 * 11 10 8 41 41 H 1.08993 * 109.47041 * 316.26843 * 18 16 6 42 42 H 1.09000 * 109.46906 * 76.26098 * 18 16 6 43 43 H 1.08998 * 109.60412 * 308.69282 * 21 19 18 44 44 H 1.08998 * 109.60146 * 69.01765 * 21 19 18 45 45 H 1.09005 * 109.67523 * 187.26913 * 22 21 19 46 46 H 1.09006 * 109.67413 * 307.76448 * 22 21 19 47 47 H 1.08993 * 109.40200 * 71.22734 * 23 22 21 48 48 H 1.09006 * 109.40541 * 190.96994 * 23 22 21 49 49 H 0.96993 * 117.95051 * 177.77934 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.3896 2.2133 -1.1505 5 6 3.5596 1.4461 -0.1784 6 7 1.6962 2.0821 1.2724 7 6 0.6742 3.1309 1.3124 8 6 -0.6443 2.5318 1.7293 9 1 -0.6957 1.4958 2.0300 10 6 -1.7860 3.3048 1.7211 11 7 -2.9376 2.7805 2.0796 12 14 -1.6972 5.0966 1.2008 13 1 -1.9169 5.1981 -0.2644 14 1 -2.7446 5.8714 1.9133 15 1 -0.3593 5.6447 1.5398 16 6 2.3202 1.7055 2.4061 17 8 2.0750 2.2721 3.4500 18 6 3.3226 0.5806 2.3766 19 6 3.5749 0.0849 3.8019 20 1 3.8868 0.9231 4.4250 21 6 4.6824 -0.9694 3.7817 22 6 4.7702 -1.6159 5.1694 23 6 3.4927 -2.4245 5.4081 24 6 2.2896 -1.5881 5.0792 25 8 1.2111 -1.9404 5.5076 26 7 2.3437 -0.4789 4.3409 27 1 -0.3633 0.4841 0.9065 28 1 -0.3633 0.5431 -0.8724 29 1 -0.3633 -1.0270 -0.0340 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.8057 3.2198 -1.1946 33 1 1.5860 1.6975 -2.0903 34 1 0.3137 2.2719 -0.9861 35 1 3.9840 0.5647 0.3023 36 1 3.8007 1.4319 -1.2414 37 1 3.9767 2.3445 0.2766 38 1 0.5737 3.5782 0.3235 39 1 0.9680 3.8973 2.0296 40 1 -3.7408 3.3244 2.0742 41 1 2.9329 -0.2374 1.7710 42 1 4.2576 0.9384 1.9455 43 1 4.4489 -1.7309 3.0376 44 1 5.6330 -0.4965 3.5351 45 1 5.6362 -2.2766 5.2123 46 1 4.8620 -0.8407 5.9302 47 1 3.5016 -3.3111 4.7741 48 1 3.4470 -2.7292 6.4537 49 1 1.5115 -0.0184 4.1507 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367994745.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:21 Heat of formation + Delta-G solvation = -66.308798 kcal Electronic energy + Delta-G solvation = -28493.912113 eV Core-core repulsion = 24842.294300 eV Total energy + Delta-G solvation = -3651.617813 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.61030 -39.59223 -37.15188 -36.38832 -33.49059 -32.92116 -31.89710 -31.36305 -30.01892 -29.04545 -27.06658 -26.56024 -23.60108 -23.20446 -22.46076 -21.90474 -20.49239 -19.08565 -17.90892 -17.12559 -17.05060 -16.22417 -15.83822 -15.63697 -15.05873 -14.81748 -14.70166 -14.09073 -14.01073 -13.92762 -13.73322 -13.69091 -13.08052 -12.97469 -12.80214 -12.48784 -12.33607 -12.08859 -11.77964 -11.64964 -11.45570 -11.30069 -11.23499 -11.15885 -11.11483 -11.06712 -10.84151 -10.56515 -10.50937 -10.39101 -10.12155 -9.92356 -9.54773 -9.21808 -8.99987 -8.78015 -8.56996 -7.70549 -6.06806 -4.04702 2.87034 3.24036 3.25833 3.34130 3.36816 3.53046 3.70355 4.38817 4.48227 4.52734 4.60467 4.73311 4.87460 5.01257 5.09654 5.14050 5.21843 5.25202 5.27615 5.40634 5.45810 5.51101 5.60941 5.65605 5.70684 5.71805 5.77240 5.83028 5.87645 5.96507 6.04708 6.06060 6.10851 6.22312 6.37878 6.55441 6.57452 6.66530 6.78219 6.99085 7.07173 7.28536 7.38793 7.61875 7.65807 8.25876 8.47329 8.48187 8.92637 8.98942 9.52544 11.05375 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014609 B = 0.005108 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.165837 B = 5480.566414 C = 6267.097676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.133 4.133 3 C 0.166 3.834 4 C -0.155 4.155 5 C -0.172 4.172 6 N -0.581 5.581 7 C 0.210 3.790 8 C -0.522 4.522 9 H 0.085 0.915 10 C 0.073 3.927 11 N -0.893 5.893 12 Si 0.869 3.131 13 H -0.276 1.276 14 H -0.285 1.285 15 H -0.266 1.266 16 C 0.509 3.491 17 O -0.538 6.538 18 C -0.177 4.177 19 C 0.153 3.847 20 H 0.085 0.915 21 C -0.132 4.132 22 C -0.122 4.122 23 C -0.135 4.135 24 C 0.513 3.487 25 O -0.562 6.562 26 N -0.706 5.706 27 H 0.105 0.895 28 H 0.054 0.946 29 H 0.036 0.964 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.035 0.965 39 H 0.032 0.968 40 H 0.264 0.736 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.097 0.903 48 H 0.097 0.903 49 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.044 -7.372 -4.303 20.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.171 4.171 3 C 0.080 3.920 4 C -0.212 4.212 5 C -0.230 4.230 6 N -0.312 5.312 7 C 0.090 3.910 8 C -0.560 4.560 9 H 0.103 0.897 10 C -0.129 4.129 11 N -0.532 5.532 12 Si 0.696 3.304 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.191 1.191 16 C 0.295 3.705 17 O -0.415 6.415 18 C -0.217 4.217 19 C 0.047 3.953 20 H 0.102 0.898 21 C -0.170 4.170 22 C -0.160 4.160 23 C -0.174 4.174 24 C 0.300 3.700 25 O -0.441 6.441 26 N -0.359 5.359 27 H 0.123 0.877 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.074 0.926 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.115 0.885 48 H 0.115 0.885 49 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 18.349 -7.289 -3.477 20.048 hybrid contribution -0.428 1.185 -0.585 1.389 sum 17.922 -6.104 -4.062 19.363 Atomic orbital electron populations 1.22250 0.93875 1.00618 1.06221 1.22169 0.98522 0.95251 1.01113 1.20378 0.93411 0.93102 0.85108 1.22187 1.03520 0.99384 0.96081 1.22677 0.95518 1.02414 1.02358 1.48090 1.38805 1.38660 1.05685 1.19753 0.87073 0.86955 0.97238 1.21360 0.90077 0.99455 1.45125 0.89747 1.24839 0.95322 0.97789 0.94958 1.69891 0.98973 1.36440 1.47872 0.86960 0.78419 0.86198 0.78814 1.20206 1.21100 1.19079 1.20141 0.82076 0.84314 0.83956 1.90706 1.64996 1.55694 1.30139 1.22938 1.01053 0.99546 0.98148 1.20791 0.84700 0.95892 0.93926 0.89759 1.21951 0.98615 0.98468 0.97957 1.21643 0.97219 0.99796 0.97353 1.21637 0.92594 0.98899 1.04315 1.20134 0.90811 0.81150 0.77923 1.90775 1.30366 1.70101 1.52848 1.45682 1.11374 1.26434 1.52390 0.87691 0.92718 0.94528 0.92175 0.91641 0.92582 0.92194 0.89479 0.91475 0.91751 0.92026 0.94707 0.94971 0.92619 0.87495 0.87321 0.90807 0.89750 0.90586 0.90977 0.88516 0.88463 0.75281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 9.18 37.16 0.34 -2.73 16 2 C -0.13 -1.88 4.76 -26.73 -0.13 -2.01 16 3 C 0.17 2.40 0.72 -131.82 -0.09 2.31 16 4 C -0.15 -2.25 6.29 37.16 0.23 -2.01 16 5 C -0.17 -1.85 7.27 37.16 0.27 -1.58 16 6 N -0.58 -10.81 2.04 -160.18 -0.33 -11.14 16 7 C 0.21 4.80 3.57 -5.19 -0.02 4.78 16 8 C -0.52 -14.02 8.52 -34.44 -0.29 -14.31 16 9 H 0.08 2.49 5.79 -52.49 -0.30 2.19 16 10 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 11 N -0.89 -26.94 13.96 55.43 0.77 -26.17 16 12 Si 0.87 20.98 27.36 -169.99 -4.65 16.33 16 13 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.27 -6.27 6.71 56.52 0.38 -5.89 16 16 C 0.51 9.32 6.34 -10.99 -0.07 9.25 16 17 O -0.54 -12.18 14.92 5.55 0.08 -12.10 16 18 C -0.18 -2.23 3.08 -27.88 -0.09 -2.31 16 19 C 0.15 1.88 2.67 -68.37 -0.18 1.70 16 20 H 0.08 1.13 7.75 -51.93 -0.40 0.73 16 21 C -0.13 -1.08 5.30 -26.60 -0.14 -1.22 16 22 C -0.12 -0.98 6.03 -26.52 -0.16 -1.14 16 23 C -0.13 -1.41 6.03 -28.10 -0.17 -1.58 16 24 C 0.51 8.19 7.71 -11.87 -0.09 8.10 16 25 O -0.56 -11.78 17.78 5.55 0.10 -11.68 16 26 N -0.71 -11.22 5.06 -54.85 -0.28 -11.49 16 27 H 0.10 2.34 3.88 -51.93 -0.20 2.14 16 28 H 0.05 0.96 6.30 -51.93 -0.33 0.63 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.91 4.75 -51.93 -0.25 0.67 16 32 H 0.06 0.79 7.69 -51.93 -0.40 0.39 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 1.52 5.41 -51.93 -0.28 1.24 16 35 H 0.07 0.60 5.14 -51.93 -0.27 0.33 16 36 H 0.06 0.59 7.88 -51.93 -0.41 0.18 16 37 H 0.06 0.70 7.89 -51.93 -0.41 0.29 16 38 H 0.04 0.75 4.49 -51.93 -0.23 0.52 16 39 H 0.03 0.82 7.06 -51.93 -0.37 0.45 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.11 1.28 4.00 -51.93 -0.21 1.07 16 42 H 0.11 1.06 6.11 -51.93 -0.32 0.74 16 43 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 47 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 48 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.41 8.02 7.38 -40.82 -0.30 7.72 16 LS Contribution 358.05 15.07 5.40 5.40 Total: -1.00 -34.28 358.05 -7.22 -41.51 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -7.63 Total: 10.13 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -0.69 Total: -0.79 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 0.17 Total: -48.80 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: 0.18 Total: -23.78 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.65 Total: 16.33 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.28 -7.22 -41.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367994745.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.803 kcal (2) G-P(sol) polarization free energy of solvation -34.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds