Wall clock time and date at job start Tue Mar 31 2020 11:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47210 * 2 1 4 4 C 1.53002 * 109.46865 * 307.10446 * 3 2 1 5 5 C 1.52999 * 109.47105 * 187.10529 * 3 2 1 6 6 N 1.46506 * 109.47214 * 67.10311 * 3 2 1 7 7 C 1.46499 * 120.00029 * 250.25880 * 6 3 2 8 8 C 1.50703 * 109.46647 * 97.41734 * 7 6 3 9 9 H 1.08001 * 120.00480 * 5.59001 * 8 7 6 10 10 C 1.37882 * 119.99859 * 185.87241 * 8 7 6 11 11 N 1.31509 * 119.99839 * 179.72037 * 10 8 7 12 12 Si 1.86800 * 119.99991 * 359.72208 * 10 8 7 13 13 H 1.48500 * 109.47008 * 89.99965 * 12 10 8 14 14 H 1.48492 * 109.47008 * 210.00326 * 12 10 8 15 15 H 1.48506 * 109.46754 * 330.00119 * 12 10 8 16 16 C 1.34769 * 119.99552 * 70.26565 * 6 3 2 17 17 O 1.21284 * 119.99568 * 177.00394 * 16 6 3 18 18 C 1.50698 * 120.00583 * 357.00168 * 16 6 3 19 19 C 1.52998 * 109.47558 * 196.26001 * 18 16 6 20 20 H 1.09001 * 109.29875 * 304.58756 * 19 18 16 21 21 C 1.52920 * 109.30233 * 184.99965 * 19 18 16 22 22 C 1.53339 * 108.67470 * 188.93643 * 21 19 18 23 23 C 1.53066 * 108.42635 * 67.53209 * 22 21 19 24 24 C 1.50173 * 109.89120 * 311.09942 * 23 22 21 25 25 O 1.21283 * 118.24777 * 197.56292 * 24 23 22 26 26 N 1.33355 * 123.51014 * 17.58144 * 24 23 22 27 27 H 1.09001 * 109.47092 * 298.10015 * 1 2 3 28 28 H 1.08996 * 109.46898 * 58.09631 * 1 2 3 29 29 H 1.08992 * 109.46910 * 178.10334 * 1 2 3 30 30 H 1.08994 * 109.47101 * 239.99428 * 2 1 3 31 31 H 1.09002 * 109.46580 * 119.99691 * 2 1 3 32 32 H 1.09001 * 109.47208 * 184.01045 * 4 3 2 33 33 H 1.08997 * 109.47136 * 304.01401 * 4 3 2 34 34 H 1.08998 * 109.47030 * 64.01399 * 4 3 2 35 35 H 1.08994 * 109.46858 * 326.79029 * 5 3 2 36 36 H 1.09002 * 109.47005 * 86.79207 * 5 3 2 37 37 H 1.08997 * 109.47220 * 206.79000 * 5 3 2 38 38 H 1.09001 * 109.47285 * 337.41743 * 7 6 3 39 39 H 1.08999 * 109.47321 * 217.41386 * 7 6 3 40 40 H 0.97005 * 119.99779 * 179.97438 * 11 10 8 41 41 H 1.08993 * 109.47041 * 316.26843 * 18 16 6 42 42 H 1.09000 * 109.46906 * 76.26098 * 18 16 6 43 43 H 1.08998 * 109.60412 * 308.69282 * 21 19 18 44 44 H 1.08998 * 109.60146 * 69.01765 * 21 19 18 45 45 H 1.09005 * 109.67523 * 187.26913 * 22 21 19 46 46 H 1.09006 * 109.67413 * 307.76448 * 22 21 19 47 47 H 1.08993 * 109.40200 * 71.22734 * 23 22 21 48 48 H 1.09006 * 109.40541 * 190.96994 * 23 22 21 49 49 H 0.96993 * 117.95051 * 177.77934 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.3896 2.2133 -1.1505 5 6 3.5596 1.4461 -0.1784 6 7 1.6962 2.0821 1.2724 7 6 0.6742 3.1309 1.3124 8 6 -0.6443 2.5318 1.7293 9 1 -0.6957 1.4958 2.0300 10 6 -1.7860 3.3048 1.7211 11 7 -2.9376 2.7805 2.0796 12 14 -1.6972 5.0966 1.2008 13 1 -1.9169 5.1981 -0.2644 14 1 -2.7446 5.8714 1.9133 15 1 -0.3593 5.6447 1.5398 16 6 2.3202 1.7055 2.4061 17 8 2.0750 2.2721 3.4500 18 6 3.3226 0.5806 2.3766 19 6 3.5749 0.0849 3.8019 20 1 3.8868 0.9231 4.4250 21 6 4.6824 -0.9694 3.7817 22 6 4.7702 -1.6159 5.1694 23 6 3.4927 -2.4245 5.4081 24 6 2.2896 -1.5881 5.0792 25 8 1.2111 -1.9404 5.5076 26 7 2.3437 -0.4789 4.3409 27 1 -0.3633 0.4841 0.9065 28 1 -0.3633 0.5431 -0.8724 29 1 -0.3633 -1.0270 -0.0340 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.8057 3.2198 -1.1946 33 1 1.5860 1.6975 -2.0903 34 1 0.3137 2.2719 -0.9861 35 1 3.9840 0.5647 0.3023 36 1 3.8007 1.4319 -1.2414 37 1 3.9767 2.3445 0.2766 38 1 0.5737 3.5782 0.3235 39 1 0.9680 3.8973 2.0296 40 1 -3.7408 3.3244 2.0742 41 1 2.9329 -0.2374 1.7710 42 1 4.2576 0.9384 1.9455 43 1 4.4489 -1.7309 3.0376 44 1 5.6330 -0.4965 3.5351 45 1 5.6362 -2.2766 5.2123 46 1 4.8620 -0.8407 5.9302 47 1 3.5016 -3.3111 4.7741 48 1 3.4470 -2.7292 6.4537 49 1 1.5115 -0.0184 4.1507 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367994745.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:20 Heat of formation + Delta-G solvation = -91.792194 kcal Electronic energy + Delta-G solvation = -28495.017156 eV Core-core repulsion = 24842.294300 eV Total energy + Delta-G solvation = -3652.722856 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.84938 -40.86908 -38.50047 -37.62849 -35.20437 -34.07803 -33.53461 -32.64383 -31.30614 -30.35269 -28.49766 -27.60175 -24.76137 -24.48505 -23.75270 -23.29849 -21.78170 -20.00830 -19.32489 -19.11692 -18.23539 -17.42442 -17.13842 -17.05883 -16.39667 -16.27011 -15.84157 -15.68581 -15.30773 -15.16655 -14.99634 -14.48229 -14.44691 -14.24094 -14.06421 -13.81975 -13.66812 -13.37530 -13.15395 -12.90795 -12.81647 -12.71749 -12.44773 -12.32340 -12.19912 -12.15482 -12.04943 -11.89350 -11.81044 -11.75781 -11.65563 -11.24067 -10.98735 -10.79767 -10.74683 -10.53497 -10.04532 -9.28354 -8.26585 -6.28012 1.28169 1.33422 1.42597 1.63620 1.85496 2.31922 2.34735 2.36119 3.06575 3.52590 3.64742 3.73477 3.78858 3.98346 4.03094 4.07749 4.13251 4.25344 4.30626 4.52624 4.56874 4.65878 4.67079 4.73648 4.75862 4.82960 4.85965 4.92614 4.97792 5.01259 5.04441 5.06492 5.12712 5.13731 5.15171 5.21379 5.32284 5.42176 5.42707 5.45781 5.54468 5.66929 5.73298 5.86177 6.34078 6.48402 6.74915 6.83748 7.20237 7.29587 7.52378 8.89253 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014609 B = 0.005108 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.165837 B = 5480.566414 C = 6267.097676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.126 4.126 3 C 0.155 3.845 4 C -0.156 4.156 5 C -0.165 4.165 6 N -0.586 5.586 7 C 0.221 3.779 8 C -0.510 4.510 9 H 0.044 0.956 10 C 0.009 3.991 11 N -0.948 5.948 12 Si 0.936 3.064 13 H -0.253 1.253 14 H -0.290 1.290 15 H -0.257 1.257 16 C 0.497 3.503 17 O -0.595 6.595 18 C -0.161 4.161 19 C 0.145 3.855 20 H 0.069 0.931 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.126 4.126 24 C 0.503 3.497 25 O -0.628 6.628 26 N -0.712 5.712 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.039 0.961 30 H 0.102 0.898 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.047 0.953 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.005 0.995 40 H 0.263 0.737 41 H 0.120 0.880 42 H 0.153 0.847 43 H 0.090 0.910 44 H 0.121 0.879 45 H 0.115 0.885 46 H 0.064 0.936 47 H 0.120 0.880 48 H 0.101 0.899 49 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.100 -8.258 -6.928 26.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.163 4.163 3 C 0.071 3.929 4 C -0.213 4.213 5 C -0.223 4.223 6 N -0.317 5.317 7 C 0.098 3.902 8 C -0.548 4.548 9 H 0.062 0.938 10 C -0.188 4.188 11 N -0.589 5.589 12 Si 0.760 3.240 13 H -0.178 1.178 14 H -0.216 1.216 15 H -0.181 1.181 16 C 0.286 3.714 17 O -0.476 6.476 18 C -0.200 4.200 19 C 0.041 3.959 20 H 0.087 0.913 21 C -0.161 4.161 22 C -0.154 4.154 23 C -0.165 4.165 24 C 0.292 3.708 25 O -0.512 6.512 26 N -0.360 5.360 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.121 0.879 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.066 0.934 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.023 0.977 40 H 0.072 0.928 41 H 0.138 0.862 42 H 0.171 0.829 43 H 0.109 0.891 44 H 0.139 0.861 45 H 0.133 0.867 46 H 0.082 0.918 47 H 0.138 0.862 48 H 0.120 0.880 49 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 23.500 -8.191 -6.160 25.638 hybrid contribution -2.061 1.408 0.250 2.508 sum 21.440 -6.783 -5.909 23.251 Atomic orbital electron populations 1.22120 0.97339 1.00038 1.03275 1.22167 0.95213 0.95712 1.03241 1.20812 0.96659 0.92580 0.82822 1.22198 1.00936 1.00386 0.97798 1.22628 0.91423 1.03514 1.04705 1.48190 1.37554 1.37985 1.07931 1.19341 0.86264 0.87636 0.96944 1.21600 0.92156 0.97791 1.43278 0.93825 1.25756 0.94910 1.02719 0.95455 1.70068 0.99903 1.38354 1.50584 0.85886 0.78473 0.80150 0.79515 1.17771 1.21574 1.18069 1.21246 0.82446 0.84892 0.82815 1.90675 1.66980 1.57809 1.32147 1.22980 1.00887 0.97211 0.98937 1.21130 0.84526 0.97122 0.93156 0.91309 1.22017 0.97967 0.97509 0.98558 1.21684 0.96779 0.99881 0.97077 1.21702 0.91009 0.98787 1.05012 1.21308 0.91869 0.81054 0.76580 1.90733 1.33318 1.71803 1.55368 1.46008 1.11629 1.26150 1.52213 0.92939 0.93015 0.94149 0.87941 0.91324 0.92130 0.88655 0.93396 0.88851 0.88864 0.92374 0.92806 0.97709 0.92797 0.86230 0.82913 0.89129 0.86076 0.86666 0.91758 0.86194 0.88033 0.78525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.21 9.18 71.98 0.66 -5.55 16 2 C -0.13 -3.24 4.76 30.60 0.15 -3.10 16 3 C 0.16 4.10 0.72 3.60 0.00 4.10 16 4 C -0.16 -4.16 6.29 71.98 0.45 -3.71 16 5 C -0.17 -2.65 7.27 71.98 0.52 -2.12 16 6 N -0.59 -21.83 2.04 -779.08 -1.59 -23.42 16 7 C 0.22 10.41 3.57 85.63 0.31 10.72 16 8 C -0.51 -29.23 8.52 25.60 0.22 -29.01 16 9 H 0.04 2.83 5.79 -2.91 -0.02 2.81 16 10 C 0.01 0.51 5.47 84.66 0.46 0.97 16 11 N -0.95 -60.96 13.96 21.45 0.30 -60.67 16 12 Si 0.94 44.86 27.36 68.60 1.88 46.74 16 13 H -0.25 -11.13 7.11 99.48 0.71 -10.42 16 14 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 15 H -0.26 -11.79 6.71 99.48 0.67 -11.12 16 16 C 0.50 18.33 6.34 87.66 0.56 18.88 16 17 O -0.59 -28.39 14.92 -3.04 -0.05 -28.44 16 18 C -0.16 -3.62 3.08 29.85 0.09 -3.53 16 19 C 0.15 3.32 2.67 45.10 0.12 3.44 16 20 H 0.07 1.80 7.75 -2.39 -0.02 1.79 16 21 C -0.12 -1.40 5.30 30.68 0.16 -1.24 16 22 C -0.12 -1.37 6.03 30.73 0.19 -1.19 16 23 C -0.13 -2.36 6.03 29.70 0.18 -2.18 16 24 C 0.50 16.46 7.71 87.71 0.68 17.14 16 25 O -0.63 -28.15 17.78 -3.04 -0.05 -28.20 16 26 N -0.71 -23.38 5.06 -446.64 -2.26 -25.64 16 27 H 0.05 2.51 3.88 -2.39 -0.01 2.50 16 28 H 0.05 1.85 6.30 -2.39 -0.02 1.84 16 29 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.07 1.74 4.75 -2.39 -0.01 1.73 16 32 H 0.06 1.54 7.69 -2.39 -0.02 1.53 16 33 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.05 1.66 5.41 -2.39 -0.01 1.65 16 35 H 0.09 1.01 5.14 -2.39 -0.01 1.00 16 36 H 0.09 1.05 7.88 -2.39 -0.02 1.03 16 37 H 0.06 1.03 7.89 -2.39 -0.02 1.01 16 38 H 0.05 2.34 4.49 -2.39 -0.01 2.33 16 39 H 0.00 0.26 7.06 -2.39 -0.02 0.24 16 40 H 0.26 15.94 8.31 -92.70 -0.77 15.17 16 41 H 0.12 2.43 4.00 -2.39 -0.01 2.42 16 42 H 0.15 2.12 6.11 -2.39 -0.01 2.10 16 43 H 0.09 0.82 8.11 -2.39 -0.02 0.80 16 44 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.12 0.59 8.14 -2.38 -0.02 0.57 16 46 H 0.06 0.89 8.13 -2.38 -0.02 0.87 16 47 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 49 H 0.38 16.29 7.38 -92.71 -0.68 15.61 16 Total: -1.00 -87.93 358.05 3.22 -84.71 By element: Atomic # 1 Polarization: 31.04 SS G_CDS: 0.25 Total: 31.29 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 4.74 Total: 3.63 kcal Atomic # 7 Polarization: -106.17 SS G_CDS: -3.55 Total: -109.72 kcal Atomic # 8 Polarization: -56.54 SS G_CDS: -0.10 Total: -56.64 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.74 kcal Total: -87.93 3.22 -84.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367994745.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.083 kcal (2) G-P(sol) polarization free energy of solvation -87.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds