Wall clock time and date at job start Tue Mar 31 2020 11:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47075 * 2 1 4 4 C 1.52998 * 109.47009 * 239.99477 * 2 1 3 5 5 C 1.50700 * 109.47246 * 60.00569 * 4 2 1 6 6 H 1.07998 * 119.99680 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00276 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99565 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99993 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47016 * 59.99895 * 9 7 5 11 11 H 1.48497 * 109.47213 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47069 * 299.99854 * 9 7 5 13 13 C 1.52998 * 109.46762 * 119.99893 * 2 1 3 14 14 N 1.46498 * 109.47264 * 299.99806 * 13 2 1 15 15 C 1.34777 * 120.00127 * 180.02562 * 14 13 2 16 16 O 1.21586 * 120.00226 * 0.02562 * 15 14 13 17 17 N 1.34781 * 119.99666 * 180.02562 * 15 14 13 18 18 C 1.47462 * 125.63263 * 359.97438 * 17 15 14 19 19 C 1.54914 * 104.81080 * 204.07289 * 18 17 15 20 20 C 1.55153 * 101.61387 * 323.04159 * 19 18 17 21 21 O 1.42896 * 110.72003 * 276.94125 * 20 19 18 22 22 C 1.53005 * 110.71800 * 153.84891 * 20 19 18 23 23 C 1.53001 * 117.49846 * 134.00683 * 22 20 19 24 24 C 1.52997 * 117.49859 * 65.34832 * 22 20 19 25 25 C 1.47023 * 125.64589 * 180.02562 * 17 15 14 26 26 H 1.08993 * 109.47322 * 300.00050 * 1 2 3 27 27 H 1.08998 * 109.46954 * 60.00376 * 1 2 3 28 28 H 1.09000 * 109.47055 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46853 * 180.02562 * 3 2 1 30 30 H 1.09008 * 109.46846 * 299.99549 * 3 2 1 31 31 H 1.08996 * 109.47563 * 59.99924 * 3 2 1 32 32 H 1.09008 * 109.47120 * 180.02562 * 4 2 1 33 33 H 1.09000 * 109.47629 * 300.00160 * 4 2 1 34 34 H 0.97002 * 119.99676 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.47085 * 179.97438 * 13 2 1 36 36 H 1.09001 * 109.47765 * 60.00126 * 13 2 1 37 37 H 0.97005 * 119.99780 * 0.02562 * 14 13 2 38 38 H 1.08994 * 110.35150 * 85.25567 * 18 17 15 39 39 H 1.09007 * 110.40264 * 322.91669 * 18 17 15 40 40 H 1.08999 * 111.00165 * 204.94948 * 19 18 17 41 41 H 1.08997 * 111.00130 * 81.13786 * 19 18 17 42 42 H 0.96700 * 114.00202 * 59.30592 * 21 20 19 43 43 H 1.08995 * 115.55091 * 279.67835 * 22 20 19 44 44 H 1.08997 * 117.49696 * 0.02562 * 23 22 20 45 45 H 1.08998 * 117.49596 * 145.01710 * 23 22 20 46 46 H 1.08994 * 117.50319 * 214.98122 * 24 22 20 47 47 H 1.09000 * 117.50061 * 359.97438 * 24 22 20 48 48 H 1.08998 * 109.88335 * 59.54969 * 25 17 15 49 49 H 1.09006 * 109.88233 * 298.39300 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9166 0.8669 -2.3806 7 6 1.8712 -0.4818 -3.7320 8 7 2.6273 -1.5512 -3.8525 9 14 1.2481 0.3983 -5.2572 10 1 1.7421 1.7987 -5.2571 11 1 1.7431 -0.3017 -6.4697 12 1 -0.2369 0.3973 -5.2573 13 6 2.0399 -0.7212 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8775 -0.4907 3.6695 16 8 2.5772 -1.4788 3.7812 17 7 1.4278 0.1444 4.7699 18 6 0.5760 1.3481 4.7793 19 6 0.8507 2.0170 6.1493 20 6 1.0089 0.7813 7.0741 21 8 -0.2680 0.3021 7.5003 22 6 1.8890 1.1168 8.2799 23 6 1.4016 0.6646 9.6579 24 6 1.3568 2.1468 9.2782 25 6 1.7061 -0.2475 6.1594 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6766 1.9562 -0.8901 31 1 1.6767 1.9563 0.8899 32 1 3.1300 -0.7218 -1.2490 33 1 1.6766 -1.7490 -1.2492 34 1 2.8616 -1.8827 -4.7335 35 1 3.1299 -0.7217 1.2491 36 1 1.6766 -1.7489 1.2494 37 1 0.9936 0.7579 2.3563 38 1 -0.4745 1.0697 4.6969 39 1 0.8565 2.0185 3.9667 40 1 0.0062 2.6321 6.4600 41 1 1.7689 2.6037 6.1205 42 1 -0.8517 0.0396 6.7753 43 1 2.9633 1.1023 8.0963 44 1 0.4542 0.1277 9.7053 45 1 2.1553 0.3529 10.3809 46 1 2.0809 2.8097 9.7517 47 1 0.3799 2.5858 9.0758 48 1 2.7810 -0.2359 6.3396 49 1 1.3069 -1.2436 6.3506 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377004749.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:44 Heat of formation + Delta-G solvation = -62.584941 kcal Electronic energy + Delta-G solvation = -26459.228873 eV Core-core repulsion = 22807.772539 eV Total energy + Delta-G solvation = -3651.456334 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.73528 -39.19715 -37.25572 -36.38296 -35.19682 -33.58372 -32.11563 -30.77117 -29.24067 -27.11611 -26.52956 -26.18471 -24.11584 -23.02485 -22.58197 -22.28028 -20.43155 -19.87976 -18.78340 -17.80150 -16.78068 -16.73146 -16.27032 -15.77785 -15.72237 -15.10923 -14.63921 -14.51623 -14.21909 -13.98956 -13.47829 -13.34945 -13.11400 -12.92833 -12.77233 -12.67317 -12.49165 -12.09572 -12.06353 -11.81380 -11.72560 -11.42660 -11.16613 -11.01791 -10.99887 -10.88109 -10.64064 -10.57295 -10.40629 -10.27626 -10.08285 -10.00307 -9.88458 -9.21440 -8.97089 -8.94511 -8.48729 -8.36088 -6.00177 -4.01646 2.57532 3.31277 3.31447 3.35152 3.36990 3.37930 3.72283 4.02447 4.11105 4.17234 4.32138 4.44920 4.60848 4.74550 4.80966 4.89472 5.02377 5.19916 5.35077 5.35618 5.41477 5.45523 5.47468 5.56444 5.61790 5.63416 5.72579 5.73508 5.81500 5.93943 6.01138 6.15577 6.22210 6.28361 6.39716 6.57987 6.61233 6.78233 7.02608 7.05282 7.06108 7.13074 7.20418 7.63663 7.76058 7.98132 8.07400 8.39863 8.72955 9.02822 9.61274 11.11211 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.038094 B = 0.002403 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.850476 B =11647.730759 C =11948.455918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.146 3.854 14 N -0.734 5.734 15 C 0.718 3.282 16 O -0.589 6.589 17 N -0.643 5.643 18 C 0.093 3.907 19 C -0.153 4.153 20 C 0.155 3.845 21 O -0.548 6.548 22 C -0.144 4.144 23 C -0.164 4.164 24 C -0.170 4.170 25 C 0.104 3.896 26 H 0.026 0.974 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.026 0.974 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.261 0.739 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.393 0.607 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.381 0.619 43 H 0.118 0.882 44 H 0.106 0.894 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.096 0.904 48 H 0.076 0.924 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.333 8.997 24.291 26.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.072 4.072 3 C -0.183 4.183 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.023 3.977 14 N -0.389 5.389 15 C 0.420 3.580 16 O -0.467 6.467 17 N -0.383 5.383 18 C -0.030 4.030 19 C -0.191 4.191 20 C 0.113 3.887 21 O -0.354 6.354 22 C -0.162 4.162 23 C -0.201 4.201 24 C -0.206 4.206 25 C -0.019 4.019 26 H 0.045 0.955 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.229 0.771 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.229 0.771 43 H 0.136 0.864 44 H 0.124 0.876 45 H 0.110 0.890 46 H 0.112 0.888 47 H 0.115 0.885 48 H 0.094 0.906 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.435 8.198 24.704 26.404 hybrid contribution -0.737 0.693 -1.655 1.940 sum -5.173 8.891 23.049 25.240 Atomic orbital electron populations 1.21748 0.95313 1.01164 1.00072 1.20911 0.95452 0.95853 0.95023 1.21750 1.00577 0.95909 1.00061 1.19087 0.96401 0.95247 0.89380 1.21133 1.31248 1.12096 0.90510 0.92337 1.25019 0.95329 0.95098 0.99085 1.69957 1.36850 1.22965 1.23557 0.86701 0.79120 0.79741 0.82665 1.20345 1.21406 1.20347 1.21519 0.98722 0.95681 0.81804 1.45392 1.56071 1.33115 1.04320 1.15513 0.80261 0.82460 0.79789 1.90930 1.42805 1.27432 1.85487 1.47570 1.55117 1.30585 1.05030 1.22330 0.94916 0.87084 0.98697 1.23426 1.04048 0.97783 0.93881 1.21435 0.83702 0.91729 0.91794 1.86490 1.25670 1.85719 1.37500 1.22087 0.98357 1.06280 0.89523 1.22906 1.03644 0.97276 0.96253 1.22919 1.02761 0.92425 1.02543 1.22424 1.01312 0.98437 0.79771 0.95451 0.91435 0.93335 0.93334 0.91431 0.95473 0.96294 0.96290 0.92973 0.91969 0.91955 0.77133 0.91433 0.90372 0.88971 0.89271 0.77093 0.86400 0.87566 0.89004 0.88810 0.88536 0.90610 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 2 C -0.07 -1.36 0.54 -154.51 -0.08 -1.44 16 3 C -0.13 -2.19 8.05 37.15 0.30 -1.89 16 4 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 5 C -0.51 -13.50 7.65 -34.44 -0.26 -13.76 16 6 H 0.06 1.48 5.68 -52.49 -0.30 1.18 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 9 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.15 2.64 4.56 -4.04 -0.02 2.62 16 14 N -0.73 -11.06 4.92 -65.23 -0.32 -11.39 16 15 C 0.72 11.54 8.49 -86.91 -0.74 10.80 16 16 O -0.59 -12.03 16.67 5.29 0.09 -11.95 16 17 N -0.64 -7.53 3.33 -176.21 -0.59 -8.11 16 18 C 0.09 0.74 6.32 -2.51 -0.02 0.72 16 19 C -0.15 -1.00 6.09 -24.58 -0.15 -1.15 16 20 C 0.16 1.19 1.10 -88.79 -0.10 1.09 16 21 O -0.55 -4.20 11.61 -35.23 -0.41 -4.61 16 22 C -0.14 -1.05 5.11 -90.62 -0.46 -1.51 16 23 C -0.16 -1.17 9.90 -26.69 -0.26 -1.44 16 24 C -0.17 -1.09 10.01 -26.70 -0.27 -1.36 16 25 C 0.10 1.09 6.19 -3.07 -0.02 1.07 16 26 H 0.03 0.38 6.86 -51.93 -0.36 0.03 16 27 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 1.26 6.62 -51.92 -0.34 0.92 16 31 H 0.03 0.38 6.86 -51.93 -0.36 0.03 16 32 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.39 5.02 4.64 -40.82 -0.19 4.83 16 38 H 0.07 0.45 7.99 -51.93 -0.42 0.03 16 39 H 0.08 0.60 7.30 -51.93 -0.38 0.22 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.09 0.59 8.05 -51.93 -0.42 0.17 16 42 H 0.38 2.09 8.63 45.56 0.39 2.49 16 43 H 0.12 0.81 7.84 -51.93 -0.41 0.40 16 44 H 0.11 0.87 7.16 -51.93 -0.37 0.50 16 45 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.08 0.84 7.62 -51.93 -0.40 0.45 16 49 H 0.07 0.86 8.07 -51.93 -0.42 0.44 16 LS Contribution 381.89 15.07 5.76 5.76 Total: -1.00 -32.24 381.89 -9.41 -41.65 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -7.66 Total: 4.09 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -1.99 Total: -5.91 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: -0.17 Total: -45.13 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.32 Total: -16.56 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.24 -9.41 -41.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377004749.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.930 kcal (2) G-P(sol) polarization free energy of solvation -32.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds