Wall clock time and date at job start Tue Mar 31 2020 11:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47075 * 2 1 4 4 C 1.52998 * 109.47009 * 239.99477 * 2 1 3 5 5 C 1.50700 * 109.47246 * 60.00569 * 4 2 1 6 6 H 1.07998 * 119.99680 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00276 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99565 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99993 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47016 * 59.99895 * 9 7 5 11 11 H 1.48497 * 109.47213 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47069 * 299.99854 * 9 7 5 13 13 C 1.52998 * 109.46762 * 119.99893 * 2 1 3 14 14 N 1.46498 * 109.47264 * 299.99806 * 13 2 1 15 15 C 1.34777 * 120.00127 * 180.02562 * 14 13 2 16 16 O 1.21586 * 120.00226 * 0.02562 * 15 14 13 17 17 N 1.34781 * 119.99666 * 180.02562 * 15 14 13 18 18 C 1.47462 * 125.63263 * 359.97438 * 17 15 14 19 19 C 1.54914 * 104.81080 * 204.07289 * 18 17 15 20 20 C 1.55153 * 101.61387 * 323.04159 * 19 18 17 21 21 O 1.42896 * 110.72003 * 276.94125 * 20 19 18 22 22 C 1.53005 * 110.71800 * 153.84891 * 20 19 18 23 23 C 1.53001 * 117.49846 * 134.00683 * 22 20 19 24 24 C 1.52997 * 117.49859 * 65.34832 * 22 20 19 25 25 C 1.47023 * 125.64589 * 180.02562 * 17 15 14 26 26 H 1.08993 * 109.47322 * 300.00050 * 1 2 3 27 27 H 1.08998 * 109.46954 * 60.00376 * 1 2 3 28 28 H 1.09000 * 109.47055 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46853 * 180.02562 * 3 2 1 30 30 H 1.09008 * 109.46846 * 299.99549 * 3 2 1 31 31 H 1.08996 * 109.47563 * 59.99924 * 3 2 1 32 32 H 1.09008 * 109.47120 * 180.02562 * 4 2 1 33 33 H 1.09000 * 109.47629 * 300.00160 * 4 2 1 34 34 H 0.97002 * 119.99676 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.47085 * 179.97438 * 13 2 1 36 36 H 1.09001 * 109.47765 * 60.00126 * 13 2 1 37 37 H 0.97005 * 119.99780 * 0.02562 * 14 13 2 38 38 H 1.08994 * 110.35150 * 85.25567 * 18 17 15 39 39 H 1.09007 * 110.40264 * 322.91669 * 18 17 15 40 40 H 1.08999 * 111.00165 * 204.94948 * 19 18 17 41 41 H 1.08997 * 111.00130 * 81.13786 * 19 18 17 42 42 H 0.96700 * 114.00202 * 59.30592 * 21 20 19 43 43 H 1.08995 * 115.55091 * 279.67835 * 22 20 19 44 44 H 1.08997 * 117.49696 * 0.02562 * 23 22 20 45 45 H 1.08998 * 117.49596 * 145.01710 * 23 22 20 46 46 H 1.08994 * 117.50319 * 214.98122 * 24 22 20 47 47 H 1.09000 * 117.50061 * 359.97438 * 24 22 20 48 48 H 1.08998 * 109.88335 * 59.54969 * 25 17 15 49 49 H 1.09006 * 109.88233 * 298.39300 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9166 0.8669 -2.3806 7 6 1.8712 -0.4818 -3.7320 8 7 2.6273 -1.5512 -3.8525 9 14 1.2481 0.3983 -5.2572 10 1 1.7421 1.7987 -5.2571 11 1 1.7431 -0.3017 -6.4697 12 1 -0.2369 0.3973 -5.2573 13 6 2.0399 -0.7212 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8775 -0.4907 3.6695 16 8 2.5772 -1.4788 3.7812 17 7 1.4278 0.1444 4.7699 18 6 0.5760 1.3481 4.7793 19 6 0.8507 2.0170 6.1493 20 6 1.0089 0.7813 7.0741 21 8 -0.2680 0.3021 7.5003 22 6 1.8890 1.1168 8.2799 23 6 1.4016 0.6646 9.6579 24 6 1.3568 2.1468 9.2782 25 6 1.7061 -0.2475 6.1594 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6766 1.9562 -0.8901 31 1 1.6767 1.9563 0.8899 32 1 3.1300 -0.7218 -1.2490 33 1 1.6766 -1.7490 -1.2492 34 1 2.8616 -1.8827 -4.7335 35 1 3.1299 -0.7217 1.2491 36 1 1.6766 -1.7489 1.2494 37 1 0.9936 0.7579 2.3563 38 1 -0.4745 1.0697 4.6969 39 1 0.8565 2.0185 3.9667 40 1 0.0062 2.6321 6.4600 41 1 1.7689 2.6037 6.1205 42 1 -0.8517 0.0396 6.7753 43 1 2.9633 1.1023 8.0963 44 1 0.4542 0.1277 9.7053 45 1 2.1553 0.3529 10.3809 46 1 2.0809 2.8097 9.7517 47 1 0.3799 2.5858 9.0758 48 1 2.7810 -0.2359 6.3396 49 1 1.3069 -1.2436 6.3506 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377004749.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:43 Heat of formation + Delta-G solvation = -84.216292 kcal Electronic energy + Delta-G solvation = -26460.166879 eV Core-core repulsion = 22807.772539 eV Total energy + Delta-G solvation = -3652.394340 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.67340 -40.22249 -38.69427 -37.18090 -35.91302 -35.23766 -33.92532 -31.60614 -30.02672 -29.03324 -27.96417 -27.55484 -25.37880 -24.24518 -23.54311 -22.87213 -21.10178 -21.01171 -20.06161 -19.02846 -18.36034 -17.60461 -17.52268 -16.98170 -16.51362 -16.40801 -16.01876 -15.57718 -15.33154 -15.21649 -14.82660 -14.50544 -14.33266 -14.01550 -13.93750 -13.78073 -13.69200 -13.38126 -13.12995 -12.83320 -12.74831 -12.58295 -12.36335 -12.32557 -12.24254 -12.22041 -12.01883 -11.99566 -11.56716 -11.53819 -11.46523 -11.11251 -10.97723 -10.86495 -10.59409 -10.49723 -10.27074 -9.56081 -8.12804 -6.20815 1.43217 1.45702 1.48860 1.53089 2.06649 2.45102 2.79629 2.96970 3.20833 3.21499 3.46912 3.52265 3.70095 3.96230 4.04930 4.08291 4.21040 4.22544 4.22610 4.31983 4.38445 4.56023 4.68061 4.71824 4.73322 4.76048 4.83105 4.88516 4.95863 4.98660 5.04943 5.09941 5.12362 5.16173 5.19976 5.31773 5.38348 5.39860 5.47589 5.50478 5.53557 5.58292 5.80638 5.90477 5.95333 6.31173 6.71997 6.91443 6.95074 7.46724 7.49685 8.99555 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.038094 B = 0.002403 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.850476 B =11647.730759 C =11948.455918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.063 4.063 3 C -0.120 4.120 4 C 0.039 3.961 5 C -0.513 4.513 6 H 0.074 0.926 7 C -0.007 4.007 8 N -0.939 5.939 9 Si 0.960 3.040 10 H -0.266 1.266 11 H -0.293 1.293 12 H -0.266 1.266 13 C 0.161 3.839 14 N -0.719 5.719 15 C 0.713 3.287 16 O -0.641 6.641 17 N -0.635 5.635 18 C 0.085 3.915 19 C -0.141 4.141 20 C 0.166 3.834 21 O -0.553 6.553 22 C -0.154 4.154 23 C -0.173 4.173 24 C -0.156 4.156 25 C 0.101 3.899 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.058 0.942 31 H 0.068 0.932 32 H -0.015 1.015 33 H -0.014 1.014 34 H 0.259 0.741 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.409 0.591 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.114 0.886 41 H 0.091 0.909 42 H 0.390 0.610 43 H 0.119 0.881 44 H 0.095 0.905 45 H 0.098 0.902 46 H 0.106 0.894 47 H 0.099 0.901 48 H 0.064 0.936 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.388 12.246 25.509 29.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.063 4.063 3 C -0.177 4.177 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.204 4.204 8 N -0.580 5.580 9 Si 0.785 3.215 10 H -0.191 1.191 11 H -0.219 1.219 12 H -0.191 1.191 13 C 0.036 3.964 14 N -0.376 5.376 15 C 0.415 3.585 16 O -0.523 6.523 17 N -0.374 5.374 18 C -0.036 4.036 19 C -0.179 4.179 20 C 0.124 3.876 21 O -0.361 6.361 22 C -0.173 4.173 23 C -0.210 4.210 24 C -0.193 4.193 25 C -0.023 4.023 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.004 0.996 33 H 0.004 0.996 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.247 0.753 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.132 0.868 41 H 0.110 0.890 42 H 0.240 0.760 43 H 0.137 0.863 44 H 0.113 0.887 45 H 0.116 0.884 46 H 0.124 0.876 47 H 0.117 0.883 48 H 0.083 0.917 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.546 11.515 25.960 29.144 hybrid contribution -0.090 -0.365 -1.933 1.969 sum -6.636 11.150 24.027 27.306 Atomic orbital electron populations 1.21679 0.93451 1.00959 1.01632 1.20701 0.96802 0.96320 0.92496 1.21681 0.99883 0.94542 1.01618 1.18973 0.94293 0.94228 0.92322 1.21549 1.30443 1.12127 0.90951 0.90778 1.25977 0.95698 0.95893 1.02804 1.70125 1.38766 1.24982 1.24133 0.85574 0.78961 0.78734 0.78211 1.19075 1.21861 1.19090 1.21085 0.97443 0.94981 0.82886 1.45002 1.56127 1.33272 1.03184 1.15673 0.80013 0.82159 0.80693 1.90895 1.45153 1.29905 1.86344 1.47528 1.54510 1.31141 1.04205 1.22688 0.95307 0.85608 1.00037 1.23402 1.05120 0.97104 0.92310 1.21316 0.83504 0.91229 0.91540 1.86492 1.25590 1.85789 1.38236 1.22142 0.98477 1.07218 0.89439 1.22920 1.03358 0.98187 0.96520 1.22969 1.03045 0.91947 1.01307 1.22549 1.01059 0.98936 0.79752 0.91287 0.92344 0.94512 0.94528 0.92332 0.91323 0.99619 0.99608 0.93209 0.93989 0.93953 0.75302 0.89217 0.89267 0.86785 0.88997 0.75977 0.86277 0.88702 0.88362 0.87552 0.88290 0.91745 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.95 8.05 71.98 0.58 -3.37 16 2 C -0.06 -2.35 0.54 -52.19 -0.03 -2.38 16 3 C -0.12 -3.95 8.05 71.98 0.58 -3.38 16 4 C 0.04 2.01 4.04 29.85 0.12 2.13 16 5 C -0.51 -27.25 7.65 25.60 0.20 -27.06 16 6 H 0.07 3.65 5.68 -2.91 -0.02 3.63 16 7 C -0.01 -0.39 5.46 84.66 0.46 0.07 16 8 N -0.94 -57.21 13.29 21.45 0.28 -56.93 16 9 Si 0.96 43.30 29.54 68.60 2.03 45.32 16 10 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 12 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 13 C 0.16 5.92 4.56 86.38 0.39 6.31 16 14 N -0.72 -20.67 4.92 -478.54 -2.35 -23.03 16 15 C 0.71 22.54 8.49 179.05 1.52 24.06 16 16 O -0.64 -27.00 16.67 -3.99 -0.07 -27.06 16 17 N -0.64 -13.88 3.33 -829.65 -2.76 -16.64 16 18 C 0.09 1.04 6.32 86.85 0.55 1.59 16 19 C -0.14 -1.33 6.09 31.99 0.19 -1.14 16 20 C 0.17 2.20 1.10 -9.61 -0.01 2.18 16 21 O -0.55 -7.26 11.61 -148.98 -1.73 -8.99 16 22 C -0.15 -1.96 5.11 -10.79 -0.06 -2.02 16 23 C -0.17 -2.23 9.90 30.62 0.30 -1.93 16 24 C -0.16 -1.60 10.01 30.62 0.31 -1.29 16 25 C 0.10 2.03 6.19 86.73 0.54 2.57 16 26 H 0.07 1.69 6.86 -2.39 -0.02 1.67 16 27 H 0.06 2.04 6.62 -2.39 -0.02 2.03 16 28 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.06 2.05 6.62 -2.38 -0.02 2.03 16 31 H 0.07 1.68 6.86 -2.39 -0.02 1.67 16 32 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 33 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 34 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 35 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.41 8.99 4.64 -92.70 -0.43 8.56 16 38 H 0.09 0.77 7.99 -2.39 -0.02 0.75 16 39 H 0.09 0.95 7.30 -2.38 -0.02 0.93 16 40 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.09 0.88 8.05 -2.39 -0.02 0.86 16 42 H 0.39 3.29 8.63 -74.06 -0.64 2.65 16 43 H 0.12 1.47 7.84 -2.39 -0.02 1.45 16 44 H 0.09 1.45 7.16 -2.39 -0.02 1.43 16 45 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.06 1.44 7.62 -2.39 -0.02 1.43 16 49 H 0.06 1.38 8.07 -2.38 -0.02 1.36 16 Total: -1.00 -73.42 381.89 0.93 -72.50 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -0.12 Total: 18.46 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: 5.65 Total: -3.65 kcal Atomic # 7 Polarization: -91.76 SS G_CDS: -4.83 Total: -96.59 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -1.80 Total: -36.05 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -73.42 0.93 -72.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377004749.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.718 kcal (2) G-P(sol) polarization free energy of solvation -73.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds