Wall clock time and date at job start Tue Mar 31 2020 11:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46880 * 2 1 4 4 C 1.52996 * 109.47155 * 119.99432 * 2 1 3 5 5 C 1.53010 * 109.46770 * 65.00104 * 4 2 1 6 6 N 1.46499 * 109.46756 * 179.97438 * 5 4 2 7 7 C 1.46500 * 120.00122 * 270.00035 * 6 5 4 8 8 C 1.50700 * 109.47101 * 270.00350 * 7 6 5 9 9 H 1.08002 * 120.00255 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00213 * 180.02562 * 8 7 6 11 11 N 1.31522 * 120.00062 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00383 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46927 * 89.99733 * 12 10 8 14 14 H 1.48497 * 109.47092 * 209.99705 * 12 10 8 15 15 H 1.48496 * 109.47089 * 329.99902 * 12 10 8 16 16 C 1.34779 * 119.99713 * 90.00646 * 6 5 4 17 17 O 1.21282 * 119.99926 * 179.97438 * 16 6 5 18 18 C 1.50699 * 120.00033 * 359.97438 * 16 6 5 19 19 C 1.50706 * 109.46817 * 180.02562 * 18 16 6 20 20 O 1.21279 * 120.00072 * 359.97438 * 19 18 16 21 21 N 1.34777 * 119.99762 * 179.97438 * 19 18 16 22 22 C 1.46496 * 120.00258 * 179.97438 * 21 19 18 23 23 C 1.52993 * 109.47551 * 180.02562 * 22 21 19 24 24 C 1.52995 * 117.50215 * 243.62544 * 23 22 21 25 25 C 1.53003 * 117.49991 * 174.99909 * 23 22 21 26 26 H 1.09001 * 109.46959 * 300.00238 * 1 2 3 27 27 H 1.09004 * 109.46912 * 59.99977 * 1 2 3 28 28 H 1.08998 * 109.46953 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47278 * 240.00088 * 2 1 3 30 30 H 1.08995 * 109.46892 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.46843 * 299.99695 * 3 2 1 32 32 H 1.09001 * 109.47519 * 60.00105 * 3 2 1 33 33 H 1.09002 * 109.47781 * 305.00563 * 4 2 1 34 34 H 1.09002 * 109.47792 * 185.00009 * 4 2 1 35 35 H 1.09004 * 109.46683 * 60.00262 * 5 4 2 36 36 H 1.08998 * 109.47208 * 299.99781 * 5 4 2 37 37 H 1.08993 * 109.47349 * 30.00352 * 7 6 5 38 38 H 1.09005 * 109.47039 * 150.00527 * 7 6 5 39 39 H 0.96998 * 120.00320 * 179.97438 * 11 10 8 40 40 H 1.09000 * 109.46670 * 60.00406 * 18 16 6 41 41 H 1.09000 * 109.47247 * 300.00119 * 18 16 6 42 42 H 0.96999 * 120.00047 * 0.02562 * 21 19 18 43 43 H 1.09000 * 109.47024 * 300.00478 * 22 21 19 44 44 H 1.09004 * 109.46875 * 60.00324 * 22 21 19 45 45 H 1.09004 * 115.54980 * 29.33254 * 23 22 21 46 46 H 1.09002 * 117.49904 * 359.97438 * 24 23 22 47 47 H 1.09005 * 117.50031 * 145.01795 * 24 23 22 48 48 H 1.09008 * 117.49804 * 214.97866 * 25 23 22 49 49 H 1.08994 * 117.49926 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6352 -2.1954 1.1881 6 7 2.1241 -2.8860 2.3840 7 6 3.4524 -3.5040 2.3815 8 6 3.3416 -4.9311 1.9103 9 1 2.3780 -5.3374 1.6401 10 6 4.4701 -5.7186 1.8250 11 7 5.6434 -5.2242 2.1545 12 14 4.3329 -7.4874 1.2402 13 1 4.4909 -7.5345 -0.2356 14 1 5.3968 -8.3036 1.8782 15 1 3.0019 -8.0302 1.6131 16 6 1.3517 -2.9529 3.4865 17 8 1.7562 -3.5251 4.4764 18 6 -0.0144 -2.3169 3.4892 19 6 -0.6660 -2.5321 4.8309 20 8 -0.0790 -3.1422 5.6993 21 7 -1.9011 -2.0464 5.0659 22 6 -2.5348 -2.2560 6.3700 23 6 -3.9217 -1.6101 6.3728 24 6 -4.1606 -0.4537 7.3456 25 6 -4.7963 -1.8200 7.6105 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6767 1.9564 0.8900 33 1 1.6054 -0.2616 2.1370 34 1 3.1264 -0.6442 1.2953 35 1 2.0700 -2.6549 0.3003 36 1 0.5489 -2.2723 1.1422 37 1 4.1096 -2.9501 1.7112 38 1 3.8636 -3.4855 3.3908 39 1 6.4374 -5.7782 2.0949 40 1 -0.6276 -2.7700 2.7102 41 1 0.0821 -1.2478 3.2998 42 1 -2.3707 -1.5587 4.3713 43 1 -2.6318 -3.3250 6.5591 44 1 -1.9213 -1.8033 7.1490 45 1 -4.4215 -1.5655 5.4051 46 1 -3.3298 -0.1533 7.9841 47 1 -4.8176 0.3521 7.0181 48 1 -5.8715 -1.9131 7.4572 49 1 -4.3834 -2.4179 8.4230 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427457704.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:28 Heat of formation + Delta-G solvation = -64.740695 kcal Electronic energy + Delta-G solvation = -26181.963464 eV Core-core repulsion = 22530.413650 eV Total energy + Delta-G solvation = -3651.549815 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.93507 -38.61102 -37.57587 -36.65797 -34.43792 -33.93472 -32.60457 -30.63055 -28.98649 -27.30059 -27.19572 -26.23914 -23.23813 -22.81080 -22.70075 -21.20129 -20.41774 -19.91045 -18.30111 -17.09806 -16.73593 -16.38216 -15.83287 -15.51588 -15.32630 -14.94774 -14.84799 -14.40741 -14.19650 -13.93640 -13.85931 -13.48482 -13.08362 -12.98615 -12.85603 -12.31207 -12.24479 -12.19284 -11.86879 -11.77994 -11.68784 -11.52636 -11.21713 -11.11042 -10.87695 -10.82202 -10.81909 -10.61921 -10.48775 -10.47108 -10.35413 -10.05958 -9.59125 -9.53451 -8.96451 -8.57320 -8.37264 -7.53938 -5.97959 -4.02190 2.90520 3.04516 3.33884 3.40914 3.45224 3.48384 3.57161 4.05448 4.35142 4.50448 4.56976 4.63809 4.80934 4.87103 4.92636 4.97315 4.99893 5.22328 5.29947 5.30428 5.36564 5.40815 5.45215 5.55627 5.56038 5.56938 5.63206 5.67884 5.74787 5.77489 5.84075 5.85126 5.89824 5.92430 6.09418 6.20094 6.25708 6.43977 6.48795 6.54304 7.13445 7.52099 7.57963 7.64664 7.99268 8.31019 8.47955 8.51010 8.98473 9.24441 9.62831 11.10064 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.009720 B = 0.003744 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.960941 B = 7477.600987 C = 9752.970645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.146 4.146 4 C -0.134 4.134 5 C 0.111 3.889 6 N -0.601 5.601 7 C 0.249 3.751 8 C -0.524 4.524 9 H 0.056 0.944 10 C 0.060 3.940 11 N -0.895 5.895 12 Si 0.897 3.103 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.504 3.496 17 O -0.497 6.497 18 C -0.164 4.164 19 C 0.510 3.490 20 O -0.486 6.486 21 N -0.739 5.739 22 C 0.152 3.848 23 C -0.168 4.168 24 C -0.178 4.178 25 C -0.172 4.172 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.031 0.969 38 H 0.042 0.958 39 H 0.262 0.738 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.397 0.603 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.110 0.890 46 H 0.097 0.903 47 H 0.095 0.905 48 H 0.096 0.904 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.502 14.682 -0.603 24.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.173 4.173 5 C -0.013 4.013 6 N -0.334 5.334 7 C 0.130 3.870 8 C -0.562 4.562 9 H 0.075 0.925 10 C -0.141 4.141 11 N -0.535 5.535 12 Si 0.725 3.275 13 H -0.207 1.207 14 H -0.211 1.211 15 H -0.199 1.199 16 C 0.288 3.712 17 O -0.370 6.370 18 C -0.208 4.208 19 C 0.294 3.706 20 O -0.357 6.357 21 N -0.395 5.395 22 C 0.028 3.972 23 C -0.186 4.186 24 C -0.215 4.215 25 C -0.210 4.210 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.049 0.951 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.230 0.770 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.128 0.872 46 H 0.115 0.885 47 H 0.113 0.887 48 H 0.115 0.885 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.586 13.821 0.636 23.170 hybrid contribution -0.346 -0.632 -0.891 1.145 sum -18.932 13.189 -0.255 23.075 Atomic orbital electron populations 1.21913 0.95578 1.01822 1.01347 1.21079 0.95589 0.96051 0.98770 1.21829 1.01174 0.96088 1.01244 1.22131 1.02123 0.95841 0.97158 1.21514 0.98527 0.91326 0.89951 1.48218 1.19434 1.54402 1.11337 1.19229 0.76927 0.92209 0.98651 1.21448 0.93738 0.96865 1.44196 0.92536 1.24931 0.95207 0.98529 0.95471 1.69935 0.98409 1.36737 1.48387 0.86516 0.77893 0.84661 0.78474 1.20719 1.21125 1.19911 1.19648 0.85699 0.81759 0.84088 1.90823 1.72380 1.41341 1.32474 1.21701 0.98110 1.04073 0.96884 1.20227 0.80999 0.79537 0.89809 1.90876 1.61793 1.37384 1.45617 1.45993 1.17907 1.59729 1.15846 1.20802 0.90298 1.00368 0.85702 1.22464 0.96974 1.03307 0.95860 1.23095 1.03600 0.91906 1.02886 1.22959 0.98958 0.99939 0.99135 0.92883 0.93048 0.92302 0.90911 0.92637 0.93044 0.92937 0.92323 0.91183 0.90069 0.91764 0.95084 0.93956 0.92795 0.86943 0.87041 0.76974 0.91223 0.91484 0.87220 0.88477 0.88698 0.88511 0.88388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.95 37.16 0.33 -0.91 16 2 C -0.10 -0.97 2.92 -90.62 -0.26 -1.24 16 3 C -0.15 -1.36 9.19 37.16 0.34 -1.02 16 4 C -0.13 -1.73 5.01 -26.73 -0.13 -1.86 16 5 C 0.11 1.71 4.97 -4.04 -0.02 1.69 16 6 N -0.60 -12.67 2.46 -175.05 -0.43 -13.10 16 7 C 0.25 6.61 5.16 -5.19 -0.03 6.58 16 8 C -0.52 -15.13 9.39 -34.44 -0.32 -15.46 16 9 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 10 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 11 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 12 Si 0.90 22.37 29.54 -169.99 -5.02 17.35 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 16 C 0.50 10.86 7.67 -10.99 -0.08 10.77 16 17 O -0.50 -13.64 13.76 -18.96 -0.26 -13.91 16 18 C -0.16 -2.39 4.74 -29.03 -0.14 -2.52 16 19 C 0.51 8.21 7.82 -10.98 -0.09 8.13 16 20 O -0.49 -10.76 14.18 -18.96 -0.27 -11.03 16 21 N -0.74 -8.15 5.56 -60.30 -0.33 -8.49 16 22 C 0.15 1.61 5.95 -4.05 -0.02 1.59 16 23 C -0.17 -1.24 5.85 -90.62 -0.53 -1.77 16 24 C -0.18 -1.19 10.18 -26.73 -0.27 -1.47 16 25 C -0.17 -1.16 10.25 -26.73 -0.27 -1.43 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.48 6.56 -51.93 -0.34 0.14 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.72 7.22 -51.93 -0.37 0.35 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 36 H 0.06 0.79 4.87 -51.93 -0.25 0.54 16 37 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 38 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.11 1.30 7.40 -51.93 -0.38 0.92 16 41 H 0.11 1.24 7.18 -51.93 -0.37 0.87 16 42 H 0.40 2.93 8.40 -40.82 -0.34 2.59 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.07 0.79 7.88 -51.93 -0.41 0.38 16 45 H 0.11 0.68 8.04 -51.93 -0.42 0.26 16 46 H 0.10 0.69 8.03 -51.93 -0.42 0.27 16 47 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.10 0.54 8.14 -51.92 -0.42 0.12 16 49 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 398.42 15.07 6.00 6.00 Total: -1.00 -37.54 398.42 -9.91 -47.44 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -8.73 Total: -0.58 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -1.60 Total: 2.74 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: -0.03 Total: -48.03 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.53 Total: -24.93 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.54 -9.91 -47.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427457704.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.299 kcal (2) G-P(sol) polarization free energy of solvation -37.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds