Wall clock time and date at job start Tue Mar 31 2020 11:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46880 * 2 1 4 4 C 1.52996 * 109.47155 * 119.99432 * 2 1 3 5 5 C 1.53010 * 109.46770 * 65.00104 * 4 2 1 6 6 N 1.46499 * 109.46756 * 179.97438 * 5 4 2 7 7 C 1.46500 * 120.00122 * 270.00035 * 6 5 4 8 8 C 1.50700 * 109.47101 * 270.00350 * 7 6 5 9 9 H 1.08002 * 120.00255 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00213 * 180.02562 * 8 7 6 11 11 N 1.31522 * 120.00062 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00383 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46927 * 89.99733 * 12 10 8 14 14 H 1.48497 * 109.47092 * 209.99705 * 12 10 8 15 15 H 1.48496 * 109.47089 * 329.99902 * 12 10 8 16 16 C 1.34779 * 119.99713 * 90.00646 * 6 5 4 17 17 O 1.21282 * 119.99926 * 179.97438 * 16 6 5 18 18 C 1.50699 * 120.00033 * 359.97438 * 16 6 5 19 19 C 1.50706 * 109.46817 * 180.02562 * 18 16 6 20 20 O 1.21279 * 120.00072 * 359.97438 * 19 18 16 21 21 N 1.34777 * 119.99762 * 179.97438 * 19 18 16 22 22 C 1.46496 * 120.00258 * 179.97438 * 21 19 18 23 23 C 1.52993 * 109.47551 * 180.02562 * 22 21 19 24 24 C 1.52995 * 117.50215 * 243.62544 * 23 22 21 25 25 C 1.53003 * 117.49991 * 174.99909 * 23 22 21 26 26 H 1.09001 * 109.46959 * 300.00238 * 1 2 3 27 27 H 1.09004 * 109.46912 * 59.99977 * 1 2 3 28 28 H 1.08998 * 109.46953 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47278 * 240.00088 * 2 1 3 30 30 H 1.08995 * 109.46892 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.46843 * 299.99695 * 3 2 1 32 32 H 1.09001 * 109.47519 * 60.00105 * 3 2 1 33 33 H 1.09002 * 109.47781 * 305.00563 * 4 2 1 34 34 H 1.09002 * 109.47792 * 185.00009 * 4 2 1 35 35 H 1.09004 * 109.46683 * 60.00262 * 5 4 2 36 36 H 1.08998 * 109.47208 * 299.99781 * 5 4 2 37 37 H 1.08993 * 109.47349 * 30.00352 * 7 6 5 38 38 H 1.09005 * 109.47039 * 150.00527 * 7 6 5 39 39 H 0.96998 * 120.00320 * 179.97438 * 11 10 8 40 40 H 1.09000 * 109.46670 * 60.00406 * 18 16 6 41 41 H 1.09000 * 109.47247 * 300.00119 * 18 16 6 42 42 H 0.96999 * 120.00047 * 0.02562 * 21 19 18 43 43 H 1.09000 * 109.47024 * 300.00478 * 22 21 19 44 44 H 1.09004 * 109.46875 * 60.00324 * 22 21 19 45 45 H 1.09004 * 115.54980 * 29.33254 * 23 22 21 46 46 H 1.09002 * 117.49904 * 359.97438 * 24 23 22 47 47 H 1.09005 * 117.50031 * 145.01795 * 24 23 22 48 48 H 1.09008 * 117.49804 * 214.97866 * 25 23 22 49 49 H 1.08994 * 117.49926 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6352 -2.1954 1.1881 6 7 2.1241 -2.8860 2.3840 7 6 3.4524 -3.5040 2.3815 8 6 3.3416 -4.9311 1.9103 9 1 2.3780 -5.3374 1.6401 10 6 4.4701 -5.7186 1.8250 11 7 5.6434 -5.2242 2.1545 12 14 4.3329 -7.4874 1.2402 13 1 4.4909 -7.5345 -0.2356 14 1 5.3968 -8.3036 1.8782 15 1 3.0019 -8.0302 1.6131 16 6 1.3517 -2.9529 3.4865 17 8 1.7562 -3.5251 4.4764 18 6 -0.0144 -2.3169 3.4892 19 6 -0.6660 -2.5321 4.8309 20 8 -0.0790 -3.1422 5.6993 21 7 -1.9011 -2.0464 5.0659 22 6 -2.5348 -2.2560 6.3700 23 6 -3.9217 -1.6101 6.3728 24 6 -4.1606 -0.4537 7.3456 25 6 -4.7963 -1.8200 7.6105 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6767 1.9564 0.8900 33 1 1.6054 -0.2616 2.1370 34 1 3.1264 -0.6442 1.2953 35 1 2.0700 -2.6549 0.3003 36 1 0.5489 -2.2723 1.1422 37 1 4.1096 -2.9501 1.7112 38 1 3.8636 -3.4855 3.3908 39 1 6.4374 -5.7782 2.0949 40 1 -0.6276 -2.7700 2.7102 41 1 0.0821 -1.2478 3.2998 42 1 -2.3707 -1.5587 4.3713 43 1 -2.6318 -3.3250 6.5591 44 1 -1.9213 -1.8033 7.1490 45 1 -4.4215 -1.5655 5.4051 46 1 -3.3298 -0.1533 7.9841 47 1 -4.8176 0.3521 7.0181 48 1 -5.8715 -1.9131 7.4572 49 1 -4.3834 -2.4179 8.4230 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427457704.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:27 Heat of formation + Delta-G solvation = -89.281059 kcal Electronic energy + Delta-G solvation = -26183.027614 eV Core-core repulsion = 22530.413650 eV Total energy + Delta-G solvation = -3652.613965 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.33935 -39.95535 -38.38322 -37.81744 -36.01937 -35.10157 -34.64544 -32.05992 -30.35898 -28.82900 -27.86200 -27.55018 -24.96415 -24.30036 -23.22875 -21.99611 -21.58568 -20.77115 -19.83240 -18.64890 -18.37579 -17.74806 -17.06144 -16.91949 -16.77895 -16.20096 -15.99024 -15.81582 -15.28386 -14.94119 -14.79739 -14.49425 -14.43354 -14.30924 -14.15306 -14.00646 -13.65717 -13.30323 -12.98653 -12.91091 -12.80697 -12.65909 -12.51575 -12.37416 -12.34237 -12.23535 -12.09127 -11.86718 -11.51654 -11.46212 -11.37097 -11.32848 -11.12444 -10.91936 -10.63702 -10.27675 -10.01412 -9.34593 -8.21557 -6.36480 1.34427 1.38705 1.48679 1.67883 1.91892 1.95749 2.36611 2.58997 2.91183 3.07411 3.52733 3.73448 3.89483 4.00553 4.01602 4.06972 4.13587 4.21452 4.28250 4.29945 4.37384 4.46287 4.67225 4.70007 4.74551 4.78683 4.82901 4.89655 4.96066 5.00559 5.04777 5.05338 5.17858 5.21872 5.23488 5.25013 5.28189 5.30771 5.44338 5.52116 5.57012 5.61106 5.66491 5.90717 6.08418 6.61886 6.72113 6.84813 7.29661 7.36752 7.61572 8.85388 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.009720 B = 0.003744 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.960941 B = 7477.600987 C = 9752.970645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.146 4.146 4 C -0.126 4.126 5 C 0.107 3.893 6 N -0.603 5.603 7 C 0.265 3.735 8 C -0.540 4.540 9 H 0.054 0.946 10 C 0.004 3.996 11 N -0.930 5.930 12 Si 0.968 3.032 13 H -0.259 1.259 14 H -0.283 1.283 15 H -0.274 1.274 16 C 0.490 3.510 17 O -0.569 6.569 18 C -0.146 4.146 19 C 0.506 3.494 20 O -0.558 6.558 21 N -0.711 5.711 22 C 0.150 3.850 23 C -0.166 4.166 24 C -0.174 4.174 25 C -0.174 4.174 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.040 0.960 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.039 0.961 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.021 0.979 38 H -0.011 1.011 39 H 0.266 0.734 40 H 0.156 0.844 41 H 0.157 0.843 42 H 0.420 0.580 43 H 0.051 0.949 44 H 0.049 0.951 45 H 0.133 0.867 46 H 0.088 0.912 47 H 0.113 0.887 48 H 0.113 0.887 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.212 16.026 -2.814 28.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.203 4.203 4 C -0.165 4.165 5 C -0.015 4.015 6 N -0.335 5.335 7 C 0.144 3.856 8 C -0.579 4.579 9 H 0.072 0.928 10 C -0.194 4.194 11 N -0.570 5.570 12 Si 0.792 3.208 13 H -0.184 1.184 14 H -0.208 1.208 15 H -0.199 1.199 16 C 0.277 3.723 17 O -0.447 6.447 18 C -0.188 4.188 19 C 0.291 3.709 20 O -0.434 6.434 21 N -0.366 5.366 22 C 0.026 3.974 23 C -0.184 4.184 24 C -0.211 4.211 25 C -0.211 4.211 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.126 0.874 37 H 0.039 0.961 38 H 0.007 0.993 39 H 0.075 0.925 40 H 0.174 0.826 41 H 0.175 0.825 42 H 0.258 0.742 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.150 0.850 46 H 0.106 0.894 47 H 0.131 0.869 48 H 0.132 0.868 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.378 15.244 -1.653 27.127 hybrid contribution 0.812 -0.983 -0.176 1.287 sum -21.566 14.261 -1.829 25.919 Atomic orbital electron populations 1.21918 0.93286 1.02621 1.02706 1.21046 0.97452 0.95931 0.96631 1.21824 1.00380 0.95743 1.02345 1.22048 1.00438 0.94521 0.99458 1.21864 1.00831 0.91947 0.86859 1.48222 1.17551 1.54227 1.13504 1.18625 0.79939 0.92111 0.94959 1.21735 0.93750 0.98060 1.44345 0.92781 1.25897 0.94779 1.03306 0.95438 1.70065 0.99214 1.38563 1.49205 0.85409 0.77677 0.78676 0.79009 1.18411 1.20803 1.19875 1.20851 0.87862 0.80822 0.82715 1.90798 1.74376 1.44521 1.35025 1.21663 0.93560 1.06250 0.97330 1.20558 0.81929 0.78770 0.89633 1.90869 1.63900 1.40899 1.47766 1.45719 1.16213 1.58065 1.16612 1.20808 0.92039 0.99588 0.84945 1.22379 0.95031 1.03711 0.97289 1.23157 1.03517 0.92248 1.02181 1.23056 0.99751 0.99884 0.98429 0.91447 0.91907 0.91717 0.91576 0.94032 0.91517 0.92238 0.91079 0.94256 0.91417 0.87365 0.96060 0.99299 0.92488 0.82623 0.82531 0.74164 0.93062 0.93223 0.84954 0.89389 0.86876 0.86836 0.89236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.95 71.98 0.64 -1.12 16 2 C -0.09 -1.62 2.92 -10.79 -0.03 -1.65 16 3 C -0.15 -2.38 9.19 71.98 0.66 -1.72 16 4 C -0.13 -3.07 5.01 30.60 0.15 -2.92 16 5 C 0.11 3.13 4.97 86.38 0.43 3.56 16 6 N -0.60 -25.93 2.46 -826.13 -2.03 -27.96 16 7 C 0.27 14.94 5.16 85.63 0.44 15.38 16 8 C -0.54 -32.33 9.39 25.60 0.24 -32.09 16 9 H 0.05 3.18 7.81 -2.91 -0.02 3.16 16 10 C 0.00 0.26 5.46 84.65 0.46 0.72 16 11 N -0.93 -58.50 13.29 21.45 0.28 -58.22 16 12 Si 0.97 46.55 29.54 68.60 2.03 48.58 16 13 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 14 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 15 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 16 C 0.49 21.42 7.67 87.66 0.67 22.09 16 17 O -0.57 -33.13 13.76 20.40 0.28 -32.85 16 18 C -0.15 -3.83 4.74 29.10 0.14 -3.69 16 19 C 0.51 15.78 7.82 87.66 0.69 16.46 16 20 O -0.56 -25.75 14.18 20.42 0.29 -25.46 16 21 N -0.71 -13.97 5.56 -463.07 -2.57 -16.54 16 22 C 0.15 3.06 5.95 86.38 0.51 3.57 16 23 C -0.17 -2.02 5.85 -10.80 -0.06 -2.09 16 24 C -0.17 -1.91 10.18 30.59 0.31 -1.60 16 25 C -0.17 -1.97 10.25 30.60 0.31 -1.66 16 26 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.06 0.70 6.56 -2.39 -0.02 0.69 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 1.55 7.22 -2.39 -0.02 1.54 16 34 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 2.18 8.07 -2.38 -0.02 2.16 16 36 H 0.11 2.21 4.87 -2.39 -0.01 2.20 16 37 H 0.02 1.22 8.07 -2.39 -0.02 1.20 16 38 H -0.01 -0.74 7.42 -2.38 -0.02 -0.76 16 39 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 40 H 0.16 2.78 7.40 -2.39 -0.02 2.76 16 41 H 0.16 2.71 7.18 -2.39 -0.02 2.69 16 42 H 0.42 4.28 8.40 -92.71 -0.78 3.50 16 43 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.05 1.20 7.88 -2.38 -0.02 1.18 16 45 H 0.13 1.06 8.04 -2.39 -0.02 1.04 16 46 H 0.09 1.14 8.03 -2.39 -0.02 1.12 16 47 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 48 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 49 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -91.34 398.42 4.00 -87.35 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.14 Total: 11.85 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: 5.57 Total: 13.25 kcal Atomic # 7 Polarization: -98.40 SS G_CDS: -4.32 Total: -102.72 kcal Atomic # 8 Polarization: -58.88 SS G_CDS: 0.57 Total: -58.31 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -91.34 4.00 -87.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427457704.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.934 kcal (2) G-P(sol) polarization free energy of solvation -91.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds