Wall clock time and date at job start Tue Mar 31 2020 11:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.52999 * 109.47317 * 120.00367 * 2 1 3 5 5 C 1.50706 * 109.46573 * 299.99925 * 4 2 1 6 6 H 1.07995 * 120.00167 * 359.72054 * 5 4 2 7 7 C 1.37879 * 119.99394 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47487 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47233 * 120.00158 * 9 7 5 12 12 H 1.48508 * 109.46883 * 239.99963 * 9 7 5 13 13 C 1.53006 * 109.46943 * 240.00224 * 2 1 3 14 14 N 1.46500 * 109.47373 * 60.00098 * 13 2 1 15 15 C 1.34767 * 119.99818 * 179.97438 * 14 13 2 16 16 O 1.21587 * 120.00589 * 0.02562 * 15 14 13 17 17 N 1.34787 * 120.00011 * 179.97438 * 15 14 13 18 18 C 1.45581 * 117.21501 * 0.02562 * 17 15 14 19 19 C 1.53255 * 108.84141 * 153.73704 * 18 17 15 20 20 C 1.52723 * 107.81786 * 57.65611 * 19 18 17 21 21 C 1.51356 * 111.42600 * 294.52823 * 20 19 18 22 22 H 1.09001 * 109.20771 * 275.12279 * 21 20 19 23 23 C 1.54322 * 109.70616 * 155.55282 * 21 20 19 24 24 O 1.43653 * 106.05868 * 255.41040 * 23 21 20 25 25 C 1.43642 * 107.64520 * 328.14302 * 24 23 21 26 26 C 1.43758 * 117.22079 * 179.74226 * 17 15 14 27 27 H 1.09002 * 108.06983 * 301.07151 * 26 17 15 28 28 H 1.09002 * 109.47153 * 299.99992 * 1 2 3 29 29 H 1.09001 * 109.46832 * 59.99801 * 1 2 3 30 30 H 1.08992 * 109.47303 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47140 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47375 * 299.99867 * 3 2 1 33 33 H 1.09002 * 109.47497 * 60.00225 * 3 2 1 34 34 H 1.09000 * 109.47486 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47362 * 59.99268 * 4 2 1 36 36 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.46866 * 180.02562 * 13 2 1 38 38 H 1.08996 * 109.47261 * 299.99767 * 13 2 1 39 39 H 0.97003 * 119.99531 * 0.02562 * 14 13 2 40 40 H 1.09000 * 109.57651 * 273.54390 * 18 17 15 41 41 H 1.08998 * 109.58005 * 33.92619 * 18 17 15 42 42 H 1.09000 * 109.78698 * 177.23663 * 19 18 17 43 43 H 1.08997 * 109.78787 * 298.07843 * 19 18 17 44 44 H 1.09003 * 109.08745 * 55.02932 * 20 19 18 45 45 H 1.09002 * 109.08829 * 174.08928 * 20 19 18 46 46 H 1.08991 * 110.13870 * 14.56065 * 23 21 20 47 47 H 1.09000 * 110.13276 * 136.20081 * 23 21 20 48 48 H 1.09004 * 110.10758 * 150.26797 * 25 24 23 49 49 H 1.09003 * 110.10899 * 271.83803 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5376 -0.0109 2.4797 6 1 0.9205 0.8698 2.3806 7 6 1.8703 -0.4823 3.7319 8 7 2.6264 -1.5516 3.8525 9 14 1.2471 0.3979 5.2571 10 1 0.4227 1.5650 4.8530 11 1 0.4218 -0.5357 6.0649 12 1 2.4018 0.8644 6.0660 13 6 2.0399 -0.7212 -1.2493 14 7 1.5516 -0.0306 -2.4455 15 6 1.8777 -0.4908 -3.6695 16 8 2.5766 -1.4793 -3.7812 17 7 1.4280 0.1443 -4.7701 18 6 0.5953 1.3210 -4.5663 19 6 0.7308 2.2403 -5.7850 20 6 0.3224 1.4412 -7.0208 21 6 1.2837 0.3024 -7.2854 22 1 2.1305 0.6746 -7.8621 23 6 0.5705 -0.8041 -8.0907 24 8 0.2997 -1.8626 -7.1580 25 6 1.3528 -1.8620 -6.1811 26 6 1.8166 -0.3943 -6.0450 27 1 2.9055 -0.3918 -6.0954 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 3.1300 -0.7217 1.2490 35 1 1.6766 -1.7490 1.2492 36 1 2.8608 -1.8830 4.7335 37 1 3.1300 -0.7216 -1.2491 38 1 1.6767 -1.7489 -1.2494 39 1 0.9943 0.7583 -2.3564 40 1 -0.4451 1.0168 -4.4521 41 1 0.9233 1.8500 -3.6715 42 1 0.0754 3.1037 -5.6705 43 1 1.7645 2.5712 -5.8845 44 1 -0.6777 1.0354 -6.8684 45 1 0.3098 2.1042 -7.8858 46 1 -0.3620 -0.4233 -8.5071 47 1 1.2187 -1.1635 -8.8898 48 1 0.9774 -2.2274 -5.2252 49 1 2.1799 -2.4851 -6.5213 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590941587.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:52 Heat of formation + Delta-G solvation = -82.502119 kcal Electronic energy + Delta-G solvation = -27244.251566 eV Core-core repulsion = 23591.931558 eV Total energy + Delta-G solvation = -3652.320008 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.30347 -39.27262 -37.28468 -36.62522 -33.86872 -33.45508 -32.17541 -31.49432 -28.69772 -27.09049 -26.51796 -26.16494 -25.69389 -23.41584 -22.88586 -22.57124 -20.68062 -19.20566 -18.57666 -17.56069 -17.05765 -16.61392 -16.27029 -15.69621 -15.67947 -15.21558 -14.58410 -14.49863 -14.33629 -14.11841 -13.90219 -13.33284 -13.29568 -12.99563 -12.82157 -12.74262 -12.54555 -12.18057 -12.06684 -11.93481 -11.57101 -11.20278 -11.14298 -11.04548 -11.02601 -10.92525 -10.83231 -10.64765 -10.39806 -10.23794 -9.96540 -9.88090 -9.79158 -9.20612 -8.91669 -8.89944 -8.45885 -8.36101 -5.99933 -4.01169 2.64638 3.28188 3.29979 3.38143 3.40290 3.71634 3.88112 4.18475 4.28755 4.39639 4.45348 4.54007 4.67770 4.90623 4.96340 5.05303 5.14751 5.28211 5.34632 5.35753 5.40274 5.47375 5.49235 5.56429 5.57962 5.64280 5.70755 5.74767 5.84736 5.90291 6.16689 6.20371 6.26262 6.41032 6.57567 6.60725 6.62519 6.69218 6.78447 6.92521 7.06212 7.07434 7.13930 7.64854 7.76921 7.98768 8.04770 8.40593 8.70819 9.03887 9.61988 11.11577 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.030360 B = 0.002836 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.034850 B = 9871.432589 C =10351.522314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.145 3.855 14 N -0.734 5.734 15 C 0.695 3.305 16 O -0.589 6.589 17 N -0.616 5.616 18 C 0.109 3.891 19 C -0.129 4.129 20 C -0.110 4.110 21 C -0.121 4.121 22 H 0.089 0.911 23 C 0.053 3.947 24 O -0.378 6.378 25 C 0.044 3.956 26 C 0.150 3.850 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.027 0.973 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.026 0.974 33 H 0.067 0.933 34 H 0.018 0.982 35 H 0.019 0.981 36 H 0.259 0.741 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.395 0.605 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.089 0.911 47 H 0.059 0.941 48 H 0.099 0.901 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.740 8.273 -23.594 25.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.073 4.073 3 C -0.183 4.183 4 C -0.001 4.001 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 C 0.021 3.979 14 N -0.391 5.391 15 C 0.396 3.604 16 O -0.467 6.467 17 N -0.354 5.354 18 C -0.014 4.014 19 C -0.167 4.167 20 C -0.148 4.148 21 C -0.140 4.140 22 H 0.107 0.893 23 C -0.024 4.024 24 O -0.297 6.297 25 C -0.034 4.034 26 C 0.044 3.956 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.086 0.914 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.232 0.768 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.107 0.893 47 H 0.077 0.923 48 H 0.117 0.883 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.321 7.299 -23.563 25.043 hybrid contribution -0.272 0.946 1.004 1.407 sum -4.594 8.246 -22.558 24.453 Atomic orbital electron populations 1.21750 0.95287 1.01196 1.00084 1.20917 0.95476 0.95838 0.95069 1.21751 1.00552 0.95929 1.00057 1.19090 0.96368 0.95263 0.89405 1.21218 1.31240 1.11894 0.90501 0.92212 1.25016 0.95319 0.95100 0.99089 1.69975 1.36971 1.23074 1.23326 0.86598 0.78598 0.79671 0.83478 1.19816 1.21132 1.21156 1.21517 0.98710 0.95734 0.81913 1.45589 1.55926 1.33072 1.04519 1.16038 0.80605 0.83047 0.80728 1.90913 1.42748 1.27278 1.85793 1.46100 1.54800 1.30108 1.04376 1.21461 0.95024 0.86102 0.98783 1.21751 1.02823 0.97939 0.94146 1.21156 0.99087 0.96133 0.98430 1.21880 0.99617 0.96952 0.95530 0.89259 1.23421 1.00161 0.86578 0.92227 1.88697 1.47586 1.52858 1.40512 1.23910 0.90513 0.95770 0.93206 1.20752 0.99495 0.92757 0.82609 0.90579 0.91438 0.95437 0.93312 0.93343 0.95497 0.91431 0.96321 0.96279 0.93093 0.91967 0.91925 0.76825 0.91711 0.90486 0.89882 0.90954 0.91118 0.91045 0.89259 0.92255 0.88336 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 2 C -0.07 -1.37 0.54 -154.51 -0.08 -1.45 16 3 C -0.13 -2.17 8.05 37.16 0.30 -1.88 16 4 C 0.04 0.89 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.46 7.65 -34.44 -0.26 -13.73 16 6 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 9 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 13 C 0.14 2.59 4.56 -4.04 -0.02 2.57 16 14 N -0.73 -10.96 4.77 -65.22 -0.31 -11.27 16 15 C 0.69 10.85 7.49 -86.92 -0.65 10.20 16 16 O -0.59 -11.25 14.57 5.29 0.08 -11.17 16 17 N -0.62 -7.41 2.97 -174.06 -0.52 -7.93 16 18 C 0.11 0.98 5.70 -4.40 -0.03 0.95 16 19 C -0.13 -0.85 6.09 -26.74 -0.16 -1.01 16 20 C -0.11 -0.71 5.12 -27.70 -0.14 -0.85 16 21 C -0.12 -0.94 3.11 -91.31 -0.28 -1.23 16 22 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 23 C 0.05 0.44 7.20 37.85 0.27 0.71 16 24 O -0.38 -4.68 11.50 -35.23 -0.41 -5.08 16 25 C 0.04 0.56 6.52 37.96 0.25 0.81 16 26 C 0.15 1.67 2.83 -69.13 -0.20 1.48 16 27 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 28 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 29 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.03 0.37 6.86 -51.93 -0.36 0.02 16 33 H 0.07 1.26 6.61 -51.93 -0.34 0.91 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.39 5.02 3.72 -40.82 -0.15 4.87 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.65 6.31 -51.93 -0.33 0.33 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.50 7.74 -51.93 -0.40 0.10 16 45 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.09 0.61 7.60 -51.93 -0.39 0.21 16 47 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.10 1.52 6.57 -51.93 -0.34 1.18 16 49 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 367.19 15.07 5.53 5.53 Total: -1.00 -31.60 367.19 -9.19 -40.79 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -8.37 Total: 1.76 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -0.92 Total: -3.09 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: -0.09 Total: -44.84 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.33 Total: -16.26 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.60 -9.19 -40.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590941587.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.708 kcal (2) G-P(sol) polarization free energy of solvation -31.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds